library(tidyverse)
## ── Attaching core tidyverse packages ──────────────────────── tidyverse 2.0.0 ──
## ✔ dplyr     1.1.2     ✔ readr     2.1.4
## ✔ forcats   1.0.0     ✔ stringr   1.5.0
## ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
## ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
## ✔ purrr     1.0.1     
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## ✖ dplyr::filter() masks stats::filter()
## ✖ dplyr::lag()    masks stats::lag()
## ℹ Use the conflicted package (<http://conflicted.r-lib.org/>) to force all conflicts to become errors
qpcra <- read.csv("../data/qPCR-data-7-24-1-aev.csv", header = TRUE)

qpcrb <- read.csv("../data/qPCR-data-21-aev.csv", header = TRUE)

qpcrc <- read.csv("../data/qPCRdata-21-4-AEV.csv", header = TRUE)
qpcra %>%
  filter(Target == "Cg_18s(1408/9)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcra %>%
  filter(Target == "Cg_Actin(1170/1)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcra %>%
  filter(Target == "Cg_Def(1160/1)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcra %>%
  filter(Target == "IL-17_internal(256/7)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrb %>%
  filter(Target == "Cg_HSP70(598/9)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrb %>%
  filter(Target == "Cg_HSP90(1532/3)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrb %>%
  filter(Target == "Cg_VIPERIN(1828/9)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrc %>%
  filter(Target == "Cg_18s(1408/9)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrc %>%
  filter(Target == "Cg_ATPsynthase(1385/6)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrc %>%
  filter(Target == "Cg_citratesynthase(1383/4)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)

qpcrc %>%
  filter(Target == "Cg_GAPDH(1172/3)") %>%
ggplot(mapping = aes(x = Subgroup, y = AEV)) + 
  geom_boxplot()  +
  geom_jitter(aes(color = History), width = 0.1, alpha = 0.7)