Index of /seashell/bu-github/hemat_bairdi_transcriptome/scripts
Name
Last modified
Size
Description
Parent Directory
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1_1_download_librari..>
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1_2_kallisto_to_dese..>
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1_3_uniprot_to_GO.Rmd
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1_4_eliminate_duplic..>
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1_5_GO-MWU_prep.Rmd
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1_6_running_GO-MWU/
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2_1_obtaining_TPM_fo..>
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2_2_DEG_blast.ipynb
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2_3_blastn_analysis.Rmd
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2_4_ncbi_genome_blas..>
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3_0_hemat1.6_indexcr..>
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3_1_download_librari..>
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3_2_kallisto_to_dese..>
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3_3_uniprot_to_GO.Rmd
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3_4_eliminate_duplic..>
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3_5_GO-MWU_prep.Rmd
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3_6_running_GO-MWU/
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4_0_cbai4.0_indexcre..>
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4_1_download_librari..>
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4_2_kallisto_to_dese..>
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4_3_uniprot_to_GO.Rmd
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4_4_eliminate_duplic..>
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4_5_GO-MWU_prep.Rmd
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4_6_running_GO-MWU/
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5_1_DEGpattern_test.Rmd
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5_2_WGCNA_cbaiv4.0_A..>
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5_3_WGCNA_cbaiv2.0_A..>
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5_4_WGCNA_hematv1.6_..>
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5_5_WGCNA_cbaiv4.0_A..>
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5_6_WGCNA_cbaiv2.0_A..>
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5_7_WGCNA_hematv1.6_..>
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5_20_running_GO-MWU/
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6_1_merge_cbai4.0_he..>
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6_2_graphing_modules..>
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7_1_manual_clusterin..>
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7_2_manual_clusterin..>
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7_3_manual_clusterin..>
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7_4_merging_manual_c..>
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7_5_merging_manual_c..>
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7_6_merging_manual_c..>
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7_7_merged_cluster_c..>
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8_1_examining_immune..>
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8_2_immune_PCAs.Rmd
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8_3_manual_clusterin..>
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8_4_manual_clusterin..>
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8_5_merging_immune_m..>
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8_6_merging_immune_m..>
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8_7_merged_immune_cl..>
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8_8_examining_all_ge..>
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8_9_examining_temper..>
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10_1_getting_transcr..>
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10_2_summary_corr_ma..>
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11_1_GOMWU_prep_WGCN..>
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11_2_prod_cluster_GO..>
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11_3_eliminate_dupli..>
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11_4_running_GOMWU/
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12_1_supp_file_creat..>
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12_2_examining_DEG_o..>
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12_3_figure_1_creati..>
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Scripts.Rproj
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205
hematodinium_analysi..>
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knitted_rmd/
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slurm_scripts/
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