FastQCFastQC Report
Tue 12 Dec 2023
T025F_S178_L002_R1_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameT025F_S178_L002_R1_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2695452
Total Bases272.2 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA40480.15017889392947825No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAGATCGGAAGAGCACACG35680.13237111994574563No Hit
GTTGCCTGGGAAAAAGAATAAGAGTGATGATGTATCCATCAAGAGTATAA27660.10261729758125909No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)