[quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: ../data/3291_5903_10007_H94MGADXX_V_CF71_ATCACG_R1.fastq.gz ../data/3291_5903_10007_H94MGADXX_V_CF71_ATCACG_R2.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 7,948,472 reads, 423,260 reads pseudoaligned [quant] estimated average fragment length: 166.396 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 806 rounds [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: ../data/3291_5903_10008_H94MGADXX_V_CF34_CGATGT_R1.fastq.gz ../data/3291_5903_10008_H94MGADXX_V_CF34_CGATGT_R2.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 9,752,597 reads, 543,996 reads pseudoaligned [quant] estimated average fragment length: 172.045 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 953 rounds [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: ../data/3291_5903_10009_H94MGADXX_V_CF26_TTAGGC_R1.fastq.gz ../data/3291_5903_10009_H94MGADXX_V_CF26_TTAGGC_R2.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 19,319,381 reads, 338,353 reads pseudoaligned [quant] estimated average fragment length: 154.223 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 781 rounds [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: ../data/3291_5903_10010_H94MGADXX_HK_CF2_TGACCA_R1.fastq.gz ../data/3291_5903_10010_H94MGADXX_HK_CF2_TGACCA_R2.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 23,172,864 reads, 871,097 reads pseudoaligned [quant] estimated average fragment length: 156.27 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 838 rounds [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: ../data/3291_5903_10011_H94MGADXX_HK_CF35_ACAGTG_R1.fastq.gz ../data/3291_5903_10011_H94MGADXX_HK_CF35_ACAGTG_R2.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 87,027,784 reads, 4,792,534 reads pseudoaligned [quant] estimated average fragment length: 162.497 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 1,036 rounds [quant] fragment length distribution will be estimated from the data [index] k-mer length: 31 [index] number of targets: 26,581 [index] number of k-mers: 29,049,947 [index] number of equivalence classes: 47,343 [quant] running in paired-end mode [quant] will process pair 1: ../data/3291_5903_10012_H94MGADXX_HK_CF70_GCCAAT_R1.fastq.gz ../data/3291_5903_10012_H94MGADXX_HK_CF70_GCCAAT_R2.fastq.gz [quant] finding pseudoalignments for the reads ... done [quant] processed 11,952,919 reads, 494,093 reads pseudoaligned [quant] estimated average fragment length: 158.367 [ em] quantifying the abundances ... done [ em] the Expectation-Maximization algorithm ran for 782 rounds