FastQCFastQC Report
Tue 9 Apr 2024
3291_5903_10007_H94MGADXX_V_CF71_ATCACG_R1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
Filename3291_5903_10007_H94MGADXX_V_CF71_ATCACG_R1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7948472
Total Bases802.7 Mbp
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGC101910.1282133220070474No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACATCACGATCTCGTATGC90130.11339286343337437TruSeq Adapter, Index 1 (100% over 50bp)
CCCCAACCAAAGTTATCTTATTAACTAACTAAATATAAATTATTAAAGCT79850.1004595600261283No Hit
CTCCTGTTCACTTTTCTTCCCCAATTCGAGGCTCTACACGCAAATGGCTG79790.10038407381947122No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)