provisional id miRDeep2 score estimated probability that the miRNA candidate is a true positive rfam alert total read count mature read count loop read count star read count significant randfold p-value miRBase miRNA example miRBase miRNA with the same seed UCSC browser NCBI blastn consensus mature sequence consensus star sequence consensus precursor sequence precursor coordinate Pocillopora_meandrina_HIv1___Sc0000000_1750 6153 - 12060 11275 0 785 yes - hsa-miR-2117_MIMAT0011162_Homo_sapiens_miR-2117 - - uguucucucugcaguaagcaugu augcuugcuguaaagagaacuug uguucucucugcaguaagcauguuuugacaugcuugcuguaaagagaacuug Pocillopora_meandrina_HIv1___Sc0000000:818048..818100:+ Pocillopora_meandrina_HIv1___Sc0000000_34562 10 - 11 9 0 2 yes - egr-miR-153-5p_MIMAT0037428_Echinococcus_granulosus_miR-153-5p - - augcuuacugcagagagaacaug aaguucucuuuacagcaagcaugucaaa aaguucucuuuacagcaagcaugucaaaacaugcuuacugcagagagaacaug Pocillopora_meandrina_HIv1___Sc0000000:818046..818099:- Pocillopora_meandrina_HIv1___Sc0000000_5496 91.4 - 177 168 0 9 yes - - - - auaguauugucgacagguacu uaccugacaacaauacuacaa auaguauugucgacagguacuuguucaaguaccugacaacaauacuacaa Pocillopora_meandrina_HIv1___Sc0000000:2872040..2872090:+ Pocillopora_meandrina_HIv1___Sc0000001_90046 5.3 - 6311 5887 0 424 yes - dme-miR-2490-3p_MIMAT0020911_Drosophila_melanogaster_miR-2490-3p - - cgcucuuaaaaucuccuagcuau uaggagguuuuaaaagagga cgcucuuaaaaucuccuagcuauugaauagcuaggagguuuuaaaagagga Pocillopora_meandrina_HIv1___Sc0000001:19145787..19145838:+ Pocillopora_meandrina_HIv1___Sc0000002_166394 54159.5 - 106223 105945 0 278 yes - tca-miR-3860-3p_MIMAT0018793_Tribolium_castaneum_miR-3860-3p - - uuguguaacucccuaaggaagg cucuuucgggugucacacaacg cucuuucgggugucacacaacgucgucaaggagcguuguguaacucccuaaggaagg Pocillopora_meandrina_HIv1___Sc0000002:3841965..3842022:- Pocillopora_meandrina_HIv1___Sc0000002_148800 59.1 - 108 103 0 5 yes - xtr-miR-449b-3p_MIMAT0022746_Xenopus_tropicalis_miR-449b-3p - - aagucgcuagcccaacaccuuua aagguuuuggguuaacggcaaaca aagucgcuagcccaacaccuuuaguaaaugaagguuuuggguuaacggcaaaca Pocillopora_meandrina_HIv1___Sc0000002:10845745..10845799:+ Pocillopora_meandrina_HIv1___Sc0000002_156343 136.5 - 260 253 0 7 yes - cja-miR-9948b_MIMAT0039722_Callithrix_jacchus_miR-9948b - - acgcuaggaagggaugccggga acggcaucacuuguuagcauua acggcaucacuuguuagcauuauuuacuaacgcuaggaagggaugccggga Pocillopora_meandrina_HIv1___Sc0000002:15749280..15749331:+ Pocillopora_meandrina_HIv1___Sc0000002_156809 1515.4 - 2964 2839 0 125 yes - mtr-miR2657_MIMAT0013457_Medicago_truncatula_miR2657 - - uguuauuuuuaucguccauuagg gaugggcgauaaggauucacauc gaugggcgauaaggauucacaucuuuaagguguuauuuuuaucguccauuagg Pocillopora_meandrina_HIv1___Sc0000002:16106578..16106631:+ Pocillopora_meandrina_HIv1___Sc0000003_190173 509.1 - 990 976 0 14 yes - nve-miR-2036-3p_MIMAT0009795_Nematostella_vectensis_miR-2036-3p - - uauauuguacgacucucaucgu ggugaaagucgcuucaauaaaca ggugaaagucgcuucaauaaacauuugacuguauauuguacgacucucaucgu Pocillopora_meandrina_HIv1___Sc0000003:495085..495138:+ Pocillopora_meandrina_HIv1___Sc0000003_206158 5.1 - 858780 856511 0 2269 yes - pbv-miR-1329-3p_MIMAT0039076_Python_bivittatus_miR-1329-3p - - acccguagauccgaacuugu acagguucgugucuauggucc acccguagauccgaacuugugggaauuucucaccacagguucgugucuauggucc Pocillopora_meandrina_HIv1___Sc0000003:10366054..10366109:+ Pocillopora_meandrina_HIv1___Sc0000005_273871 65863.2 - 129179 127776 0 1403 yes - nve-miR-2023-3p_MIMAT0009756_Nematostella_vectensis_miR-2023-3p - - aaagaaguacaagugguaggg cugccacucguauuuucuuuca cugccacucguauuuucuuucacguuuaucgaugaaagaaguacaagugguaggg Pocillopora_meandrina_HIv1___Sc0000005:601591..601646:+ Pocillopora_meandrina_HIv1___Sc0000005_286150 29656.8 - 58167 58121 0 46 yes - mdo-miR-1546-5p_MIMAT0006146_Monodelphis_domestica_miR-1546-5p - - ucagggauuguggugaguuaguu ccagcucauaucaguaccugcua ucagggauuguggugaguuaguuguuuuauuugcaaccagcucauaucaguaccugcua Pocillopora_meandrina_HIv1___Sc0000005:10385518..10385577:+ Pocillopora_meandrina_HIv1___Sc0000005_287631 15853.5 - 31088 27966 0 3122 yes - dre-miR-125b-3-3p_MIMAT0031965_Danio_rerio_miR-125b-3-3p - - ucagguuaggagcaugguauaga caugccagguccuagcuugaaa caugccagguccuagcuugaaaauuguguucagguuaggagcaugguauaga Pocillopora_meandrina_HIv1___Sc0000005:11260752..11260804:+ Pocillopora_meandrina_HIv1___Sc0000005_287638 5845.2 - 11458 7888 0 3570 yes - hma-mir-new12_Hydra_magnipapillata_Krishna_et_al._2013_NA - - uaugccagguccuaacuugaaa ucagguuaugagcgugguaugaa uaugccagguccuaacuugaaaauuauuuucagguuaugagcgugguaugaa Pocillopora_meandrina_HIv1___Sc0000005:11261377..11261429:+ Pocillopora_meandrina_HIv1___Sc0000008_394550 526.9 - 1027 1022 0 5 yes - cin-miR-4143-5p_MIMAT0016744_Ciona_intestinalis_miR-4143-5p - - uauguuuuggcuuguuccca ugagaguaagccaacucauaaa uauguuuuggcuuguucccaauuuuuugagaguaagccaacucauaaa Pocillopora_meandrina_HIv1___Sc0000008:1783823..1783871:+ Pocillopora_meandrina_HIv1___Sc0000008_397436 152.7 - 292 138 0 154 yes - gga-miR-7468-3p_MIMAT0029091_Gallus_gallus_miR-7468-3p - - cgauggaacacacaaguagaga uuacuuguuguauucuauuaua cgauggaacacacaaguagagauuauauacuuuacuuguuguauucuauuaua Pocillopora_meandrina_HIv1___Sc0000008:3576441..3576494:+ Pocillopora_meandrina_HIv1___Sc0000008_414140 184.8 - 360 282 0 78 yes - mmu-miR-7026-3p_MIMAT0027957_Mus_musculus_miR-7026-3p - - ugugcuuugguucaaaaauguc cauuuuuaaacugaaacacugc cauuuuuaaacugaaacacugcaauuguuguugugcuuugguucaaaaauguc Pocillopora_meandrina_HIv1___Sc0000008:3619362..3619415:- Pocillopora_meandrina_HIv1___Sc0000008_416340 775.3 - 1513 1033 0 480 yes - hsa-miR-5003-3p_MIMAT0021026_Homo_sapiens_miR-5003-3p - - aacuuuucuacaauuccagugga cgcuggaauuguacagaagauga cgcuggaauuguacagaagaugauuuaaucaacuuuucuacaauuccagugga Pocillopora_meandrina_HIv1___Sc0000008:5387758..5387811:- Pocillopora_meandrina_HIv1___Sc0000010_454382 13573.1 - 26614 26579 0 35 yes - dre-miR-430c-5p_MIMAT0031929_Danio_rerio_miR-430c-5p - - uacuucaauguuaucgguuugu gaaccgauaacauugaag uacuucaauguuaucgguuuguuuaaaacgaaccgauaacauugaag Pocillopora_meandrina_HIv1___Sc0000010:8012937..8012984:+ Pocillopora_meandrina_HIv1___Sc0000012_517292 1188.9 - 2323 2254 0 69 yes - cel-miR-70-5p_MIMAT0020317_Caenorhabditis_elegans_miR-70-5p - - ugaaauacucugacggagucagc cacuccaucagaauauuuugc ugaaauacucugacggagucagcuucagugcacuccaucagaauauuuugc Pocillopora_meandrina_HIv1___Sc0000012:6455204..6455255:+ Pocillopora_meandrina_HIv1___Sc0000014_570804 712 - 1389 1376 0 13 yes - nve-miR-2025-3p_MIMAT0009760_Nematostella_vectensis_miR-2025-3p - - auuuuuagcccgcggaaguugc aacuuucgcagguuaaaaacucc aacuuucgcagguuaaaaacuccuuuagugaauuuuuagcccgcggaaguugc Pocillopora_meandrina_HIv1___Sc0000014:2366059..2366112:- Pocillopora_meandrina_HIv1___Sc0000014_558690 170.7 - 327 176 0 151 yes - mmu-miR-3102-5p.2-5p_MIMAT0014934_Mus_musculus_miR-3102-5p.2-5p - - cguggugcguuauuguuucggu ugaaacauuaacacgccaaugau ugaaacauuaacacgccaaugauguuauccguggugcguuauuguuucggu Pocillopora_meandrina_HIv1___Sc0000014:2594762..2594813:+ Pocillopora_meandrina_HIv1___Sc0000014_583714 5647.4 - 11076 10933 0 143 yes - - - - uuccagauuuguaucauuguuau agcauuguuacuuauuuggaaga agcauuguuacuuauuuggaagauuuguguuccagauuuguaucauuguuau Pocillopora_meandrina_HIv1___Sc0000014:9365480..9365532:- Pocillopora_meandrina_HIv1___Sc0000016_620715 8138.8 - 15955 10027 0 5928 yes - rlcv-miR-rL1-29-5p_MIMAT0019194_Rhesus_lymphocryptovirus_miR-rL1-29-5p - - ucagucccaccagcucaccaau ggugggcuguuggaacuugua ggugggcuguuggaacuuguauuuuuaugauaucagucccaccagcucaccaau Pocillopora_meandrina_HIv1___Sc0000016:7555659..7555713:+ Pocillopora_meandrina_HIv1___Sc0000017_655645 67675.4 - 132734 82659 0 50075 yes - tca-miR-6008-5p_MIMAT0023557_Tribolium_castaneum_miR-6008-5p - - aacugcugagauucuauggauuu auccauagaacuucugcauuuga aacugcugagauucuauggauuuaauuuaaauccauagaacuucugcauuuga Pocillopora_meandrina_HIv1___Sc0000017:5050927..5050980:- Pocillopora_meandrina_HIv1___Sc0000024_771594 5.2 - 3079 3074 0 5 yes - ssc-miR-9845-5p_MIMAT0037063_Sus_scrofa_miR-9845-5p - - agaacccaagaaucucga ucaagguucugggguuau agaacccaagaaucucgaagguuuuuaaaaccuucaagguucugggguuau Pocillopora_meandrina_HIv1___Sc0000024:4808687..4808738:+ Pocillopora_meandrina_HIv1___Sc0000035_908286 2344.8 - 4592 4264 0 328 yes - mtr-miR5274b-3p_MIMAT0022210_Medicago_truncatula_miR5274b-3p - - uauuuacaacucucaaaacaac uguuuuaagaguugugaa uauuuacaacucucaaaacaacauuauuuuguuuuaagaguugugaa Pocillopora_meandrina_HIv1___Sc0000035:1989841..1989888:+