provisional id miRDeep2 score estimated probability that the miRNA candidate is a true positive rfam alert total read count mature read count loop read count star read count significant randfold p-value miRBase miRNA example miRBase miRNA with the same seed UCSC browser NCBI blastn consensus mature sequence consensus star sequence consensus precursor sequence precursor coordinate Porites_evermani_scaffold_1_2216 4846.3 - 9504 9313 0 191 yes - - - - uuaugcucuguauacugguagu uaccaguauacagaacau uaccaguauacagaacauaaaagauucuuuuaugcucuguauacugguagu Porites_evermani_scaffold_1:1404271..1404322:- Porites_evermani_scaffold_16_29449 1893.3 - 3712 3123 0 589 yes - - - - uuaagggccugggagagagaag ucucucuccaaaucccuuaggu uuaagggccugggagagagaaguuuuucucuucucucuccaaaucccuuaggu Porites_evermani_scaffold_16:383405..383458:- Porites_evermani_scaffold_26_42156 46827.4 - 91841 89274 0 2567 yes - gga-miR-1467-5p_MIMAT0007345_Gallus_gallus_miR-1467-5p - - ucucagcucaccaaucucugcu cagggacuggugagcugauguc cagggacuggugagcugaugucauuuacugaucucagcucaccaaucucugcu Porites_evermani_scaffold_26:382571..382624:- Porites_evermani_scaffold_47_64440 1553.3 - 3040 3016 0 24 yes - sma-miR-8408-5p_MIMAT0033520_Schistosoma_mansoni_miR-8408-5p - - uaauuauaucagaaggaagaaga ccuuucuucugaaauaauaauu ccuuucuucugaaauaauaauuauuuaguaauaauuauaucagaaggaagaaga Porites_evermani_scaffold_47:475992..476046:- Porites_evermani_scaffold_49_66031 5.1 - 267618 258679 0 8939 yes - pbv-miR-1329-3p_MIMAT0039076_Python_bivittatus_miR-1329-3p - - ucccguagauccgaacuugu acagguugggcucuacgguca ucccguagauccgaacuuguggguauuuucuccacagguugggcucuacgguca Porites_evermani_scaffold_49:151607..151661:- Porites_evermani_scaffold_138_135566 1686.5 - 3301 3214 0 87 yes - gga-miR-181b-1-3p_MIMAT0026522_Gallus_gallus_miR-181b-1-3p - - ucacugaagccgucuaucuugau aaggucaaauggcuuuuguguuua ucacugaagccgucuaucuugauuuuaaccaaggucaaauggcuuuuguguuua Porites_evermani_scaffold_138:127965..128019:+ Porites_evermani_scaffold_253_199639 5.5 - 58908 58394 0 514 yes - gma-miR10419_MIMAT0041665_Glycine_max_miR10419 - - uaaaaaacucgucgacguga gcacguggacgaguuuuuaacu gcacguggacgaguuuuuaacuuuugaugguuaaaaaacucgucgacguga Porites_evermani_scaffold_253:202254..202305:+ Porites_evermani_scaffold_334_234019 5.6 - 969 686 0 283 yes - gga-miR-12259-5p_MIMAT0050009_Gallus_gallus_miR-12259-5p - - ugcagguacaguuauaaggu accuuauaacuguaccugccaa ugcagguacaguuauaagguccccuugguggaccuuauaacuguaccugccaa Porites_evermani_scaffold_334:153573..153626:- Porites_evermani_scaffold_334_233889 5.5 - 111 96 0 15 yes - cpi-miR-9592-5p_MIMAT0037980_Chrysemys_picta_miR-9592-5p - - gaccuuauaacuguaccugc gcagguacaguuauaaggucc gcagguacaguuauaagguccaccaaggggaccuuauaacuguaccugc Porites_evermani_scaffold_334:153576..153625:+ Porites_evermani_scaffold_430_272198 4.4 - 2488 2487 0 1 yes - nve-miR-2036-3p_MIMAT0009795_Nematostella_vectensis_miR-2036-3p - - uauauuguacgacucucauc aaagucgucucaauacacaguug aaagucgucucaauacacaguugauguauauuguacgacucucauc Porites_evermani_scaffold_430:205889..205935:- Porites_evermani_scaffold_442_276503 182.4 - 356 212 0 144 yes - - - - uauggagaucgaggauggcauu cacccuccucgaucuccauaau uauggagaucgaggauggcauuauugacaacacccuccucgaucuccauaau Porites_evermani_scaffold_442:239732..239784:- Porites_evermani_scaffold_461_284173 998.8 - 1958 905 0 1053 yes - - - - cgguucuuguaugcuguucuaag ugaacagcuuacaaugaagc ugaacagcuuacaaugaagccuauauuuauuguacgguucuuguaugcuguucuaag Porites_evermani_scaffold_461:215473..215530:+ Porites_evermani_scaffold_590_330485 1635.5 - 3206 3117 0 89 yes - - - - ucacgaauggcuagcgcacgaua cgcgcgcuaguccuucggu cgcgcgcuaguccuucgguaaauuguuucguuucacgaauggcuagcgcacgaua Porites_evermani_scaffold_590:199125..199180:+ Porites_evermani_scaffold_590_330489 1455.3 - 2853 2605 0 248 yes - - - - ucacgaauggcuagugcacgaua cgcgcgcuaguccuuugguaaag cgcgcgcuaguccuuugguaaagcguuucguuucacgaauggcuagugcacgaua Porites_evermani_scaffold_590:199822..199877:+ Porites_evermani_scaffold_594_331559 22726.6 - 44568 41387 0 3181 yes - nve-miR-2023-3p_MIMAT0009756_Nematostella_vectensis_miR-2023-3p - - aaagaaguacaagugguaggg cugccacuuguaucuucuuuca cugccacuuguaucuucuuucacguuuaucgaugaaagaaguacaagugguaggg Porites_evermani_scaffold_594:158195..158250:+ Porites_evermani_scaffold_613_337817 3020.5 - 5916 5901 0 15 yes - bma-miR-5858-3p_MIMAT0037481_Brugia_malayi_miR-5858-3p - - uuccuaaguuguuauagcuguu cagcugcaauggcuuaggaaa cagcugcaauggcuuaggaaaaaguuaauauuuuccuaaguuguuauagcuguu Porites_evermani_scaffold_613:156472..156526:+ Porites_evermani_scaffold_730_369126 2121.3 - 4159 2162 0 1997 yes - - - - uguuaguuuacaguuaguguuu acgcuaacuguaaaacuaacaag acgcuaacuguaaaacuaacaaguucaacuuguuaguuuacaguuaguguuu Porites_evermani_scaffold_730:81384..81436:- Porites_evermani_scaffold_730_369130 2121.2 - 4159 2162 0 1997 yes - - - - uguuaguuuacaguuaguguuu acgcuaacuguaaaacuaacaag acgcuaacuguaaaacuaacaaguucaacuuguuaguuuacaguuaguguuu Porites_evermani_scaffold_730:82422..82474:- Porites_evermani_scaffold_768_379507 184.6 - 353 263 0 90 yes - stu-miR8002-5p_MIMAT0030892_Solanum_tuberosum_miR8002-5p - - uuuuucgugugcuuaugcuuau uagcacaagcacaggaagaacg uagcacaagcacaggaagaacgaacuuguccguuuuucgugugcuuaugcuuau Porites_evermani_scaffold_768:137992..138046:+ Porites_evermani_scaffold_866_407971 204.7 - 396 372 0 24 yes - str-miR-8390-5p_MIMAT0033448_Strongyloides_ratti_miR-8390-5p - - uauuucaaacgucgcguaaccu guugcaugaccugugaaagaaaa uauuucaaacgucgcguaaccuuuuuaaggguugcaugaccugugaaagaaaa Porites_evermani_scaffold_866:22822..22875:- Porites_evermani_scaffold_910_418384 17914.4 - 35129 34380 0 749 yes - hsa-miR-33a-3p_MIMAT0004506_Homo_sapiens_miR-33a-3p - - caauguuucggcuuguuccca gaacaagccgaaacauuaga caauguuucggcuuguucccauuuucgggaacaagccgaaacauuaga Porites_evermani_scaffold_910:99254..99302:+ Porites_evermani_scaffold_910_418426 43145.7 - 84619 84496 0 123 yes - hsa-miR-33a-3p_MIMAT0004506_Homo_sapiens_miR-33a-3p - - caauguuucggcuuguucccg ggaacaagccgaaacauuuga caauguuucggcuuguucccguuuucgggaacaagccgaaacauuuga Porites_evermani_scaffold_910:118741..118789:+ Porites_evermani_scaffold_910_418444 13472.1 - 26416 26047 0 369 yes - hsa-miR-33a-3p_MIMAT0004506_Homo_sapiens_miR-33a-3p - - aaauguuucggcuuguuccc gaacaagccgaagcauuuga aaauguuucggcuuguucccguuucagagaacaagccgaagcauuuga Porites_evermani_scaffold_910:139352..139400:+ Porites_evermani_scaffold_942_424597 16354.3 - 32077 27897 0 4180 yes - - - - uagguaacucuguuaguuuguuu acagacuaacagaguuucuugg acagacuaacagaguuucuugguuuauuuccuagguaacucuguuaguuuguuu Porites_evermani_scaffold_942:133666..133720:+ Porites_evermani_scaffold_1128_466250 1371.1 - 2680 2549 0 131 yes - mmu-miR-1198-5p_MIMAT0005859_Mus_musculus_miR-1198-5p - - cauguguuaauuuggacgauu ucguccaaauugacacaugguu ucguccaaauugacacaugguuuuuaauaccauguguuaauuuggacgauu Porites_evermani_scaffold_1128:125547..125598:- Porites_evermani_scaffold_1429_519577 6732.5 - 13197 8417 0 4780 yes - oan-miR-1421ad-3p_MIMAT0007260_Ornithorhynchus_anatinus_miR-1421ad-3p - - ugcaucacuaaaauuucucaau ugagaaauugaagugaugcu ugcaucacuaaaauuucucaaugauucaauugagaaauugaagugaugcu Porites_evermani_scaffold_1429:47256..47306:- Porites_evermani_scaffold_3072_699443 468.6 - 912 903 0 9 yes - nve-miR-2025-3p_MIMAT0009760_Nematostella_vectensis_miR-2025-3p - - auuuuuagcccgcggaaguugc aacuuucacugguuaaaaacuc aacuuucacugguuaaaaacuccuuuacgugaauuuuuagcccgcggaaguugc Porites_evermani_scaffold_3072:29447..29501:+ Porites_evermani_scaffold_3707_735656 0.4 - 9858 9858 0 0 yes - - - - uugaacacugaaacccugu aggguucaaguauucaucc aggguucaaguauucaucccuuuuggcugguugaacacugaaacccugu Porites_evermani_scaffold_3707:36126..36175:- Porites_evermani_scaffold_3893_743991 861.7 - 1681 1578 0 103 yes - api-miR-3020_MIMAT0014756_Acyrthosiphon_pisum_miR-3020 - - uuaagaauaucagugauaggga ccuaucacugauauucuuaaua uuaagaauaucagugauagggauuuuuaaaugccuaucacugauauucuuaaua Porites_evermani_scaffold_3893:3816..3870:- Porites_evermani_scaffold_5010_777173 1205.2 - 2355 2339 0 16 yes - bmo-miR-2769_MIMAT0013650_Bombyx_mori_miR-2769 - - uuauauuauagacuuuccuugu aaggaaagccuauaauauaagu aaggaaagccuauaauauaagucauuuaaugacuuauauuauagacuuuccuugu Porites_evermani_scaffold_5010:12358..12413:+