Settings:
  Output files: "../data/Porites_evermanni_v1.index.*.ht2"
  Line rate: 7 (line is 128 bytes)
  Lines per side: 1 (side is 128 bytes)
  Offset rate: 4 (one in 16)
  FTable chars: 10
  Strings: unpacked
  Local offset rate: 3 (one in 8)
  Local fTable chars: 6
  Local sequence length: 57344
  Local sequence overlap between two consecutive indexes: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  ../data/Porites_evermanni_v1.fa
Reading reference sizes
  Time reading reference sizes: 00:00:12
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:04
  Time to read SNPs and splice sites: 00:00:00
Using parameters --bmax 2639293 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 2639293 --dcv 1024
Constructing suffix-array element generator
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering GFM loop
Exited GFM loop
fchr[A]: 0
fchr[C]: 171827598
fchr[G]: 281650468
fchr[T]: 391517086
fchr[$]: 563049165
Exiting GFM::buildToDisk()
Returning from initFromVector
Wrote 165954540 bytes to primary GFM file: ../data/Porites_evermanni_v1.index.1.ht2
Wrote 140762296 bytes to secondary GFM file: ../data/Porites_evermanni_v1.index.2.ht2
Re-opening _in1 and _in2 as input streams
Returning from GFM constructor
Returning from initFromVector
Wrote 285251749 bytes to primary GFM file: ../data/Porites_evermanni_v1.index.5.ht2
Wrote 142637054 bytes to secondary GFM file: ../data/Porites_evermanni_v1.index.6.ht2
Re-opening _in5 and _in5 as input streams
Returning from HGFM constructor
Headers:
    len: 563049165
    gbwtLen: 563049166
    nodes: 563049166
    sz: 140762292
    gbwtSz: 140762292
    lineRate: 7
    offRate: 4
    offMask: 0xfffffff0
    ftabChars: 10
    eftabLen: 0
    eftabSz: 0
    ftabLen: 1048577
    ftabSz: 4194308
    offsLen: 35190573
    offsSz: 140762292
    lineSz: 128
    sideSz: 128
    sideGbwtSz: 112
    sideGbwtLen: 448
    numSides: 1256807
    numLines: 1256807
    gbwtTotLen: 160871296
    gbwtTotSz: 160871296
    reverse: 0
    linearFM: Yes
Total time for call to driver() for forward index: 00:05:50