provisional id miRDeep2 score estimated probability that the miRNA candidate is a true positive rfam alert total read count mature read count loop read count star read count significant randfold p-value miRBase miRNA example miRBase miRNA with the same seed UCSC browser NCBI blastn consensus mature sequence consensus star sequence consensus precursor sequence precursor coordinate NC_058066.1_Acropora_millepora_isolate_JS-1_chromosome_1_Amil_v2.1_whole_genome_shotgun_sequence_43162 4203.4 - 8238 8064 0 174 no - ath-miR831-3p_MIMAT0004249_Arabidopsis_thaliana_miR831-3p - - ugaucucugcaauagccugccuc ggagguuagugcagaggucauc ggagguuagugcagaggucaucguuauugaugaucucugcaauagccugccuc NC_058066.1_Acropora_millepora_isolate_JS-1_chromosome_1_Amil_v2.1_whole_genome_shotgun_sequence:12757145..12757198:- NC_058066.1_Acropora_millepora_isolate_JS-1_chromosome_1_Amil_v2.1_whole_genome_shotgun_sequence_16631 78.4 - 148 139 0 9 no - cja-miR-9948b_MIMAT0039722_Callithrix_jacchus_miR-9948b - - acgcuaggaagggaugccggga acggcaccccuugcuggaguua acggcaccccuugcuggaguuauuuaauaacgcuaggaagggaugccggga NC_058066.1_Acropora_millepora_isolate_JS-1_chromosome_1_Amil_v2.1_whole_genome_shotgun_sequence:20088649..20088700:+ NC_058066.1_Acropora_millepora_isolate_JS-1_chromosome_1_Amil_v2.1_whole_genome_shotgun_sequence_49320 127017.5 - 249134 248655 0 479 no - nve-miR-9437_MIMAT0035398_Nematostella_vectensis_miR-9437 - - uuaacgaguagauaaaugaagaga cuucguuuauucacucguucaua cuucguuuauucacucguucauauuuauuauuaacgaguagauaaaugaagaga NC_058066.1_Acropora_millepora_isolate_JS-1_chromosome_1_Amil_v2.1_whole_genome_shotgun_sequence:20346247..20346301:- NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence_99544 957 - 1872 1703 0 169 no - hma-miR-2022_MIMAT0009720_Hydra_magnipapillata_miR-2022 - - uuugcuaguugcuuuugucccgu uggacaaaggcuccaagcaaaug uggacaaaggcuccaagcaaauguuuaucauuugcuaguugcuuuugucccgu NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence:5656213..5656266:- NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence_107317 4346.5 - 8519 8506 0 13 no - gma-miR4352b_MIMAT0018276_Glycine_max_miR4352b - - aaaaaugucgguugcuuaagcu cucaagcacacgacguuuuuga aaaaaugucgguugcuuaagcucucuaauaguaagcucaagcacacgacguuuuuga NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence:16118234..16118291:- NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence_81558 14705.5 - 28847 27971 0 876 no - - - - uaggcguauuuccgauugucc gacagccggaacuacgucugu uaggcguauuuccgauuguccuuuuacuacgacagccggaacuacgucugu NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence:21549048..21549099:+ NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence_84764 2769.9 - 5429 5380 0 49 no - hsa-miR-607_MIMAT0003275_Homo_sapiens_miR-607 - - uuucaaauuaggaagggagauguu caccgcucugcuaauuuga uuucaaauuaggaagggagauguuuuacugaacaccgcucugcuaauuuga NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence:25838852..25838903:+ NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence_85389 6367 - 12490 10356 0 2134 no - - - - augaucauagcacuuucuuugu aaagaaagugcucuaaucauaa aaagaaagugcucuaaucauaauguuguuaugaucauagcacuuucuuugu NC_058067.1_Acropora_millepora_isolate_JS-1_chromosome_2_Amil_v2.1_whole_genome_shotgun_sequence:26890850..26890901:+ NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence_123927 40339.4 - 79122 73935 0 5187 no - bdi-miR7733-3p_MIMAT0030201_Brachypodium_distachyon_miR7733-3p - - ucugcguuaucggugaaauugu auuucacuagauaagcgcuaac auuucacuagauaagcgcuaacuguuauuguucugcguuaucggugaaauugu NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence:597846..597899:+ NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence_123929 38710.3 - 75924 73935 0 1989 no - bdi-miR7733-3p_MIMAT0030201_Brachypodium_distachyon_miR7733-3p - - ucugcguuaucggugaaauugu auuucacuagaugagcgcuaac auuucacuagaugagcgcuaacuguuauuguucugcguuaucggugaaauugu NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence:598142..598195:+ NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence_141384 5869.1 - 11506 11411 0 95 no - Adi-Mir-Novel-5_3p_Acropora_digitifera_Gajigan_&_Conaco_2017_NA - - caagugagagaagguuagugugg acgcuaaccugcuuucacuucca acgcuaaccugcuuucacuuccauuuaaugcaagugagagaagguuagugugg NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence:3756521..3756574:- NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence_152302 214.5 - 414 412 0 2 no - osa-miR5499_MIMAT0022132_Oryza_sativa_miR5499 - - aaaggaagaaaggagacccugg agggucucucuucuucccuuucc agggucucucuucuucccuuucccuggugagaggaaaggaagaaaggagacccugg NC_058068.1_Acropora_millepora_isolate_JS-1_chromosome_3_Amil_v2.1_whole_genome_shotgun_sequence:17539511..17539567:- NC_058069.1_Acropora_millepora_isolate_JS-1_chromosome_4_Amil_v2.1_whole_genome_shotgun_sequence_155016 202.9 - 393 228 0 165 no - bdi-miR7726b-5p_MIMAT0030218_Brachypodium_distachyon_miR7726b-5p - - auugaugagcacaacaaaaggu uuuuugugauguucgucaauau auugaugagcacaacaaaaggucuaugggcacuuuuugugauguucgucaauau NC_058069.1_Acropora_millepora_isolate_JS-1_chromosome_4_Amil_v2.1_whole_genome_shotgun_sequence:1868155..1868209:+ NC_058069.1_Acropora_millepora_isolate_JS-1_chromosome_4_Amil_v2.1_whole_genome_shotgun_sequence_177636 117.8 - 231 221 0 10 no - dme-miR-9c-3p_MIMAT0020828_Drosophila_melanogaster_miR-9c-3p - - uaaagcuuuugugaagaaacacg uguuuuuucguaacagcuucaua uguuuuuucguaacagcuucauaaauugaauuauaaagcuuuugugaagaaacacg NC_058069.1_Acropora_millepora_isolate_JS-1_chromosome_4_Amil_v2.1_whole_genome_shotgun_sequence:2018510..2018566:- NC_058069.1_Acropora_millepora_isolate_JS-1_chromosome_4_Amil_v2.1_whole_genome_shotgun_sequence_193634 7816.8 - 15327 15132 0 195 no - nve-miR-2025-3p_MIMAT0009760_Nematostella_vectensis_miR-2025-3p - - auuuuuagcccgcggaaguugcg agcuuucgcgggauaaaaacuc agcuuucgcgggauaaaaacuccuucaugugaauuuuuagcccgcggaaguugcg NC_058069.1_Acropora_millepora_isolate_JS-1_chromosome_4_Amil_v2.1_whole_genome_shotgun_sequence:21012167..21012222:- NC_058070.1_Acropora_millepora_isolate_JS-1_chromosome_5_Amil_v2.1_whole_genome_shotgun_sequence_226769 2323 - 4551 4497 0 54 no - nve-miR-9416_MIMAT0035372_Nematostella_vectensis_miR-9416 - - aagaacacccaaaauagcugagga cugcuauauugaguguucuaac aagaacacccaaaauagcugaggauuuuguuuccugcuauauugaguguucuaac NC_058070.1_Acropora_millepora_isolate_JS-1_chromosome_5_Amil_v2.1_whole_genome_shotgun_sequence:2184975..2185030:- NC_058070.1_Acropora_millepora_isolate_JS-1_chromosome_5_Amil_v2.1_whole_genome_shotgun_sequence_208678 40616.1 - 79661 79121 0 540 no - hsa-miR-4330_MIMAT0016924_Homo_sapiens_miR-4330 - - ucucagauuacaguaguuaagu cuuaacuacugcaaucugaacau ucucagauuacaguaguuaaguaauuaaauacuuaacuacugcaaucugaacau NC_058070.1_Acropora_millepora_isolate_JS-1_chromosome_5_Amil_v2.1_whole_genome_shotgun_sequence:11598966..11599020:+ NC_058070.1_Acropora_millepora_isolate_JS-1_chromosome_5_Amil_v2.1_whole_genome_shotgun_sequence_221839 1422.1 - 2786 2711 0 75 no - sbi-miR5388_MIMAT0021686_Sorghum_bicolor_miR5388 - - uucuuugcacuguucaaacccu uguuugaacaguccaaguagc uguuugaacaguccaaguagcaguuauuguucuuugcacuguucaaacccu NC_058070.1_Acropora_millepora_isolate_JS-1_chromosome_5_Amil_v2.1_whole_genome_shotgun_sequence:26873997..26874048:+ NC_058071.1_Acropora_millepora_isolate_JS-1_chromosome_6_Amil_v2.1_whole_genome_shotgun_sequence_256047 39769.6 - 78001 65898 0 12103 no - nve-miR-2023-3p_MIMAT0009756_Nematostella_vectensis_miR-2023-3p - - aaagaaguacaagugguaggg cugcuacuuggacuuuuuuca cugcuacuuggacuuuuuucacguuuaucgaugaaagaaguacaagugguaggg NC_058071.1_Acropora_millepora_isolate_JS-1_chromosome_6_Amil_v2.1_whole_genome_shotgun_sequence:8840769..8840823:+ NC_058072.1_Acropora_millepora_isolate_JS-1_chromosome_7_Amil_v2.1_whole_genome_shotgun_sequence_295614 12623.6 - 24755 24435 0 320 no - tca-miR-11646-3p_MIMAT0045620_Tribolium_castaneum_miR-11646-3p - - ugggugucaucuauuauguuuu aacauaaaagauggcacc ugggugucaucuauuauguuuuugcuuguuaaaacauaaaagauggcacc NC_058072.1_Acropora_millepora_isolate_JS-1_chromosome_7_Amil_v2.1_whole_genome_shotgun_sequence:19030617..19030667:+ NC_058072.1_Acropora_millepora_isolate_JS-1_chromosome_7_Amil_v2.1_whole_genome_shotgun_sequence_295613 1.1 - 24449 24435 14 0 no - tca-miR-11646-3p_MIMAT0045620_Tribolium_castaneum_miR-11646-3p - - ugggugucaucuauuauguuuu aauguaacaaaauugacggccaga aauguaacaaaauugacggccagaagccguacguauguagaaaauguggggugagugccugggugucaucuauuauguuuu NC_058072.1_Acropora_millepora_isolate_JS-1_chromosome_7_Amil_v2.1_whole_genome_shotgun_sequence:19030558..19030639:+ NC_058073.1_Acropora_millepora_isolate_JS-1_chromosome_8_Amil_v2.1_whole_genome_shotgun_sequence_328215 637.6 - 1247 1209 0 38 no - gga-miR-6677-5p_MIMAT0025780_Gallus_gallus_miR-6677-5p - - cucacugcuuaaaagagucacu uggcucuuuuaaguaguugaaua uggcucuuuuaaguaguugaauaauuaaauuuacucacugcuuaaaagagucacu NC_058073.1_Acropora_millepora_isolate_JS-1_chromosome_8_Amil_v2.1_whole_genome_shotgun_sequence:11856140..11856195:+ NC_058073.1_Acropora_millepora_isolate_JS-1_chromosome_8_Amil_v2.1_whole_genome_shotgun_sequence_328676 3.7 - 1359909 1354598 0 5311 no - pbv-miR-1329-3p_MIMAT0039076_Python_bivittatus_miR-1329-3p - - ucccguagauccgaacuugu acaaguucgucucuaugguuu ucccguagauccgaacuuguggguuuucuuccacaaguucgucucuaugguuu NC_058073.1_Acropora_millepora_isolate_JS-1_chromosome_8_Amil_v2.1_whole_genome_shotgun_sequence:12437102..12437155:+ NC_058073.1_Acropora_millepora_isolate_JS-1_chromosome_8_Amil_v2.1_whole_genome_shotgun_sequence_344920 928.6 - 1817 1783 0 34 no - nve-miR-2036-3p_MIMAT0009795_Nematostella_vectensis_miR-2036-3p - - uauauuguacgacucucaucgugu cggugaaagucgcuucaauacaca cggugaaagucgcuucaauacacauuugauguauauuguacgacucucaucgugu NC_058073.1_Acropora_millepora_isolate_JS-1_chromosome_8_Amil_v2.1_whole_genome_shotgun_sequence:15996877..15996932:- NC_058074.1_Acropora_millepora_isolate_JS-1_chromosome_9_Amil_v2.1_whole_genome_shotgun_sequence_348474 5325.7 - 10440 8224 0 2216 no - nve-miR-2030-5p_MIMAT0009780_Nematostella_vectensis_miR-2030-5p - - uagcauaacauuguaagagaucu ucucuuacauuguugugcugcc uagcauaacauuguaagagaucuuuaaaggucucuuacauuguugugcugcc NC_058074.1_Acropora_millepora_isolate_JS-1_chromosome_9_Amil_v2.1_whole_genome_shotgun_sequence:2966522..2966574:+ NC_058075.1_Acropora_millepora_isolate_JS-1_chromosome_10_Amil_v2.1_whole_genome_shotgun_sequence_390473 171.5 - 332 317 0 15 no - mtr-miR2651_MIMAT0013423_Medicago_truncatula_miR2651 - - uuugauugcugugaucugguua accagaccccugcaaucaaaga accagaccccugcaaucaaagagcuuuuugucuuugauugcugugaucugguua NC_058075.1_Acropora_millepora_isolate_JS-1_chromosome_10_Amil_v2.1_whole_genome_shotgun_sequence:15908490..15908544:+ NC_058075.1_Acropora_millepora_isolate_JS-1_chromosome_10_Amil_v2.1_whole_genome_shotgun_sequence_408878 3.4 - 8473 8437 0 36 no - asu-miR-250-5p_MIMAT0021507_Ascaris_suum_miR-250-5p - - ucuggcaguauguuauuuuuc gaauguaagauacugccaugca gaauguaagauacugccaugcauuuagugucuggcaguauguuauuuuuc NC_058075.1_Acropora_millepora_isolate_JS-1_chromosome_10_Amil_v2.1_whole_genome_shotgun_sequence:19537880..19537930:- NC_058077.1_Acropora_millepora_isolate_JS-1_chromosome_12_Amil_v2.1_whole_genome_shotgun_sequence_459486 12860.5 - 25227 25162 0 65 no - - - - agugcacuuuucucaggaugaa cuucuugagaaaauuucaccca agugcacuuuucucaggaugaauugaauucuucuugagaaaauuucaccca NC_058077.1_Acropora_millepora_isolate_JS-1_chromosome_12_Amil_v2.1_whole_genome_shotgun_sequence:21629096..21629147:+ NC_058078.1_Acropora_millepora_isolate_JS-1_chromosome_13_Amil_v2.1_whole_genome_shotgun_sequence_500792 178.3 - 346 210 0 136 no - mmu-miR-669a-3p_MIMAT0017243_Mus_musculus_miR-669a-3p - - ucauaacagugaggaccauucu aaugaucccugcucuuaugaau aaugaucccugcucuuaugaauguaauuagguucauaacagugaggaccauucu NC_058078.1_Acropora_millepora_isolate_JS-1_chromosome_13_Amil_v2.1_whole_genome_shotgun_sequence:5700442..5700496:- NC_058078.1_Acropora_millepora_isolate_JS-1_chromosome_13_Amil_v2.1_whole_genome_shotgun_sequence_489676 494.9 - 965 685 0 280 no - nve-miR-2040b-3p_MIMAT0009809_Nematostella_vectensis_miR-2040b-3p - - uucgucucuuguauuuuccugg acgaaaauacaagugacuggug uucgucucuuguauuuuccugguauauaccacgaaaauacaagugacuggug NC_058078.1_Acropora_millepora_isolate_JS-1_chromosome_13_Amil_v2.1_whole_genome_shotgun_sequence:13646563..13646615:+ NC_058079.1_Acropora_millepora_isolate_JS-1_chromosome_14_Amil_v2.1_whole_genome_shotgun_sequence_514889 296 - 579 505 0 74 no - hsa-miR-3173-3p_MIMAT0015048_Homo_sapiens_miR-3173-3p - - caaggaggaagcaugauacgua cgcaucauguuucccucuuuau cgcaucauguuucccucuuuauuuuaaaucaaggaggaagcaugauacgua NC_058079.1_Acropora_millepora_isolate_JS-1_chromosome_14_Amil_v2.1_whole_genome_shotgun_sequence:2370955..2371006:+ NC_058079.1_Acropora_millepora_isolate_JS-1_chromosome_14_Amil_v2.1_whole_genome_shotgun_sequence_516747 97.5 - 185 178 0 7 no - mmu-miR-3069-3p_MIMAT0014845_Mus_musculus_miR-3069-3p - - uuggacaccuguaauuggaua uccaauuacagcuguccaauu uccaauuacagcuguccaauuugaacuuuuuguaauuggacaccuguaauuggaua NC_058079.1_Acropora_millepora_isolate_JS-1_chromosome_14_Amil_v2.1_whole_genome_shotgun_sequence:5232143..5232199:+ NC_058079.1_Acropora_millepora_isolate_JS-1_chromosome_14_Amil_v2.1_whole_genome_shotgun_sequence_516787 97.3 - 185 178 0 7 no - mmu-miR-3069-3p_MIMAT0014845_Mus_musculus_miR-3069-3p - - uuggacaccuguaauuggaua uccaauuacagcuguccaauu uccaauuacagcuguccaauuugaacuuuuuguaauuggacaccuguaauuggaua NC_058079.1_Acropora_millepora_isolate_JS-1_chromosome_14_Amil_v2.1_whole_genome_shotgun_sequence:5261407..5261463:+ NW_025322765.1_Acropora_millepora_isolate_JS-1_unplaced_genomic_scaffold_Amil_v2.1_xfSc0000041_whole_genome_shotgun_sequence_674173 23.1 - 40 35 0 5 no - ppt-miR1053-5p_MIMAT0005170_Physcomitrella_patens_miR1053-5p - - uauggguugacagucgacgguc cugacgacuguugcgccauugc cugacgacuguugcgccauugcuugaacgacuauggguugacagucgacgguc NW_025322765.1_Acropora_millepora_isolate_JS-1_unplaced_genomic_scaffold_Amil_v2.1_xfSc0000041_whole_genome_shotgun_sequence:722265..722318:+ NW_025322765.1_Acropora_millepora_isolate_JS-1_unplaced_genomic_scaffold_Amil_v2.1_xfSc0000041_whole_genome_shotgun_sequence_674848 23.2 - 40 35 0 5 no - ppt-miR1053-5p_MIMAT0005170_Physcomitrella_patens_miR1053-5p - - uauggguugacagucgacgguc cugacgacuguugcgccauugc cugacgacuguugcgccauugcuugaacgacuauggguugacagucgacgguc NW_025322765.1_Acropora_millepora_isolate_JS-1_unplaced_genomic_scaffold_Amil_v2.1_xfSc0000041_whole_genome_shotgun_sequence:799181..799234:-