[quant] fragment length distribution will be estimated from the data
[index] k-mer length: 31
[index] number of targets: 854
[index] number of k-mers: 339,787,125
[index] number of equivalence classes: 1,090,935
Warning: 51983 transcripts were defined in GTF file, but not in the index
[quant] running in paired-end mode
[quant] will process pair 1: ../data/SRR8601366_1.fastq
                             ../data/SRR8601366_2.fastq
[quant] finding pseudoalignments for the reads ... done
[quant] processed 24,777,415 reads, 21,034,838 reads pseudoaligned
[quant] estimated average fragment length: 201.098
[   em] quantifying the abundances ... done
[   em] the Expectation-Maximization algorithm ran for 52 rounds
[  bam] writing pseudoalignments to BAM format .. done
[  bam] sorting BAM files .. done
[  bam] indexing BAM file .. done