Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:3841944-3842042 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_925.ps.pdf
Locus Name: Cluster_925
AGUUACAUCCUUCGCAGCCCCUCUUUCGGGUGUCACACAACGUCGUCAAGGAGCGUUGUGUAACUCCCUAAGGAAGGCUUGCAAAGGAGGGCAGAAAAC
.(((...(((((.((((((..(((((.(((.((.((((((((((......)).)))))))).)).))).))))).))).))).))))).)))....... (-39.50)
....................CUCUUUCGGGUGUCACACAACa......................................................... len:22 al:22
....................CUCUUUCGGGUGUCACACg............................................................ len:19 al:1
....................CUCUUUCGGGUGUCACACAAC.......................................................... len:21 al:38
....................CUCUUUCGGGUGUCACACAAu.......................................................... len:21 al:4
....................CUCUUUCGGGUGUCACACAACG......................................................... len:22 al:50
....................CUCUUUCGaGUGUCACACAACG......................................................... len:22 al:1
....................CUCUUUCGGGUGUCACACAACGc........................................................ len:23 al:1
....................CUCUUUCGGGUGUCACACA............................................................ len:19 al:13
....................CUCUUUCGGGUGaCACACAAC.......................................................... len:21 al:1
....................CUCUUUCGGGUGUCACACAACGUu....................................................... len:24 al:5
....................uUCUUUCGGGUGUCACACAAC.......................................................... len:21 al:1
....................CUCUUUCGGGUGUCACAC............................................................. len:18 al:2
....................CUCUUUCGGGUGUCACACAACGU........................................................ len:23 al:6
....................CUCUUUCGGGUGUCACACAAg.......................................................... len:21 al:1
....................CUCUUUCGGGUGUCACAu............................................................. len:18 al:2
....................CcCUUUCGGGUGUCACACAACG......................................................... len:22 al:1
.....................UCUUUCGGGUGUCACACAgCGUC....................................................... len:23 al:1
.....................UCUUUCGGGUGUCACACAACGUu....................................................... len:23 al:16
.....................UCUUUCGGGUGUCACACAACG......................................................... len:21 al:5
.....................UCUUUCGGGUGUCACACAACGc........................................................ len:22 al:9
.....................UCUUUCGGGUGUCACACAACGa........................................................ len:22 al:4
.....................UCcUUCGGGUGUCACACAACGU........................................................ len:22 al:1
.....................UCUUUCGGGUGUCACACAACGcC....................................................... len:23 al:2
.....................UCUUUCGGGUGUCACACA............................................................ len:18 al:1
.....................UCUUUCGGGUGUCACACAACGg........................................................ len:22 al:4
.....................UCUUUCGGGUGUCACACAACGUa....................................................... len:23 al:6
.....................UCUUUCGGGUGUCACACAAC.......................................................... len:20 al:1
.....................UCUUUCGGGUGUCACACAACGUC....................................................... len:23 al:33
.....................UCUUUCGGGUGUCACACAACGU........................................................ len:22 al:29
.......................UUUCGGGUGUCACACAACGU........................................................ len:20 al:1
.......................UUUCGGGUGUCACACAACG......................................................... len:19 al:1
.......................UUUCGGGUGUCACACAACGUa....................................................... len:21 al:1
.......................UUUCGGGUGUCACACAAC.......................................................... len:18 al:2
.......................UUUCGGGUGUCACACAACa......................................................... len:19 al:1
.......................UUUCGGGUGUCACACAACGUC....................................................... len:21 al:10
.......................UUUCGGGUGUCACACAACGUu....................................................... len:21 al:1
...................................................AGCGUUGUGUAACUCCCUAAGGu......................... len:23 al:1
.....................................................CGUUGUGUAACUCCCUAu............................ len:18 al:1
.....................................................CGUUaUGUAACUCCCUAAGGAA........................ len:22 al:1
.....................................................CGUaGUGUAACUCCCUAA............................ len:18 al:1
.....................................................CGUUGUGUAACUCCCUAAGGAg........................ len:22 al:2
.....................................................CGUUGUGUAACUCCCUAAGGA......................... len:21 al:1
.....................................................CGUUGUGUAACUCCCUAA............................ len:18 al:1
.....................................................CGUUGUGUAACUCCCUAAGGAAG....................... len:23 al:2
.....................................................CGUUGUGUAACUCCCUgA............................ len:18 al:1
......................................................aUUGUGUAACUCCCUAAGGAAGG...................... len:23 al:1
......................................................cUUGUGUAACUCCCUAAGGAAGG...................... len:23 al:18
......................................................GUUGUGUAACUCCCUAAGGA......................... len:20 al:1
......................................................GUUGUGUAACUCCCUAAGGAgG....................... len:22 al:1
......................................................GUUGUGUAACUCCCUAAGGAAa....................... len:22 al:2
......................................................GUaGUGUAACUCCCUAAGGAAGG...................... len:23 al:1
......................................................GUUGUGUAACUCCCUAAG........................... len:18 al:1
......................................................GUUGUGUAACUCCCUAAGGAAGG...................... len:23 al:1
......................................................GUUGUGUAACUCCCUAAGGg......................... len:20 al:2
.......................................................UUGaGUAACUCCCUAAGGAAG....................... len:21 al:2
.......................................................UUGUGUAACUCCCUAcGGAAGG...................... len:22 al:10
.......................................................UUGUGUAACUCCCUAAGGAAGa...................... len:22 al:20776
.......................................................UUGUGUAACUCCCUAAGGAAGGgU.................... len:24 al:3
.......................................................UUGcGUAACUCCCUAAGGA......................... len:19 al:9
.......................................................UUGUGUAACUCCCUgAGGAA........................ len:20 al:3
.......................................................UUGUGUAACaCCCUAAGGAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCUAAGGg......................... len:19 al:48
.......................................................UUGUGUAACUCCCUAAcG.......................... len:18 al:2
.......................................................UUGUGUAACUCCCUAAGGAAGGuU.................... len:24 al:5
.......................................................UUGUGUAAgUCCCUAAGGAAGG...................... len:22 al:2
.......................................................cUGUGUAACUCCCUAAGGA......................... len:19 al:21
.......................................................UUGUGUAACUCCCUAAGGAAG....................... len:21 al:2009
.......................................................UUGUGUAACUCuCUAAGGAAGG...................... len:22 al:57
.......................................................UUGUGUAgCUCCCUAA............................ len:16 al:1
.......................................................UUGUGUAACUCCCUAAGGAAa....................... len:21 al:341
.......................................................UUGUGUAACUCCCUAuGGAAGG...................... len:22 al:15
.......................................................cUGUGUAACUCCCUAAGGAAGGC..................... len:23 al:1
.......................................................UUGUGUAACUCCCUgAGGAAGG...................... len:22 al:119
.......................................................UUGUGUAACUCCaUAAGGAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCUAgGGA......................... len:19 al:6
.......................................................UUGUGUAACUCCCUAgGGAAG....................... len:21 al:1
.......................................................aUGUGUAACUCCCUAAGGA......................... len:19 al:7
.......................................................UUGcGUAACUCCCUAAGGAAGG...................... len:22 al:264
.......................................................UUGgGUAACUCCCUAAGGA......................... len:19 al:1
.......................................................UUGUGUAACUCCCUAAGGAAGGC..................... len:23 al:61
.......................................................UUGUGUAACgCCCUAAGGAAGG...................... len:22 al:7
.......................................................UUGUGUAACUCCCUAAG........................... len:17 al:3
.......................................................UUGUGUAACUCCCUAAuGAA........................ len:20 al:1
.......................................................UUGUGUAACUCCCUAAGGAAGGCa.................... len:24 al:1
.......................................................UUGUGUAgCUCCCUAAGG.......................... len:18 al:5
.......................................................UUGUGcAACUCCCUAAGGAAGG...................... len:22 al:144
.......................................................UUGUGUAACUCuCUAAGGAAG....................... len:21 al:2
.......................................................aUGUGUAACUCCCUAAGGAAG....................... len:21 al:4
.......................................................UUGUGUAACUCCCUgAGGA......................... len:19 al:1
.......................................................UUGUGUAACUCCuUAAGGAA........................ len:20 al:1
.......................................................UUGUGUAACUCCCUAgGGAA........................ len:20 al:4
.......................................................UUGUGUAuCUCCCUAAGGAAGG...................... len:22 al:20
.......................................................UUGUGUAACUCCCUAAGaA......................... len:19 al:21
.......................................................UUGUGaAACUCCCUAAGGAAG....................... len:21 al:1
.......................................................gUGUGUAACUCCCUAA............................ len:16 al:1
.......................................................UUGUGUAACUCCCUAAGGAAc....................... len:21 al:66
.......................................................UUaUGUAACUCCCUAAGGAA........................ len:20 al:2
.......................................................UUGUGUAACUCCCUAAGuAAGG...................... len:22 al:7
.......................................................UUGUGUAACUCgCUAAGGAAGG...................... len:22 al:1
.......................................................UUGUGUAACUCCCUgAGGAAG....................... len:21 al:3
.......................................................UaGUGUAACUCCCUAAGGAAG....................... len:21 al:1
.......................................................gUGUGUAACUCCCUAAGGAA........................ len:20 al:1
.......................................................UUGUGUAACUCCCUAAGGuAG....................... len:21 al:2
.......................................................UUGgGUAACUCCCUAAGGAAGG...................... len:22 al:8
.......................................................cUGUGUAACUCCCUAAGGAAGG...................... len:22 al:601
.......................................................cUGUGUAACUCCCUAAGGAAG....................... len:21 al:10
.......................................................UUGaGUAACUCCCUAAGGAAGG...................... len:22 al:54
.......................................................UUGUGUAACUCCCUAAGGAAGGuUU................... len:25 al:2
.......................................................UUGUGUcACUCCCUAAGGAAGG...................... len:22 al:3
.......................................................UUGUGUAACcCCCUAAGGAAGG...................... len:22 al:209
.......................................................UaGUGUAACUCCCUAAGGA......................... len:19 al:2
.......................................................UUGUGUAACUCCuUAAGGAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCUAAGGAg........................ len:20 al:36
.......................................................UUGUGUAACUCCCUAuGGAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCUAAGGAAu....................... len:21 al:77
.......................................................UUGUGUAAuUCCCUAAGGA......................... len:19 al:1
.......................................................UaGUGUAACUCCCUAAGGAAGG...................... len:22 al:44
.......................................................UUGUGUAACUCCCUAAGGu......................... len:19 al:68
.......................................................UUGUGUgACUCCCUAAGGAAGG...................... len:22 al:616
.......................................................cUGUGUAACUCCCUAA............................ len:16 al:3
.......................................................cUGUGUAACUCCCUAAGGAA........................ len:20 al:23
.......................................................UUGUGUAACUCuCUAAGGA......................... len:19 al:1
.......................................................UUGcGUAACUCCCUAAGGAA........................ len:20 al:7
.......................................................UUGUGUAACUCCCUAuGGAA........................ len:20 al:1
.......................................................gUGUGUAACUCCCUAAGGAAGG...................... len:22 al:18
.......................................................UUGUGUAACUCCCUAu............................ len:16 al:5
.......................................................cUGUGUAACUCCCUAAGG.......................... len:18 al:2
.......................................................UUGUGUAACUCCCUAAGGAuG....................... len:21 al:2
.......................................................UUGUGUuACUCCCUAAGGAAGG...................... len:22 al:16
.......................................................UUGUGUAACUCCaUAAGGAA........................ len:20 al:1
.......................................................UUGUGUAACUCCCUAAaGAA........................ len:20 al:1
.......................................................UUGUGUAACUCCCUAAGGAAGG...................... len:22 al:66971
.......................................................UUGUGUAACUCCCUAAGGAAGGa..................... len:23 al:92
.......................................................UUGUGcAACUCCCUAAGGAAG....................... len:21 al:4
.......................................................UUGUGUAACUCCCUAAGcAAGG...................... len:22 al:4
.......................................................UUGUGUAACUCCCUAAGuAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCUAAGGAAcG...................... len:22 al:708
.......................................................UUGUGUAACUCCCUAAGGAAGGaUU................... len:25 al:1
.......................................................UcGUGUAACUCCCUAAGGA......................... len:19 al:8
.......................................................UUGUGUAACUCuCUAAGG.......................... len:18 al:1
.......................................................UUGUGUAACUCCCUAAcGAAGG...................... len:22 al:3
.......................................................UUGUGUAACUCCCUAAGGcAGG...................... len:22 al:12
.......................................................UUGUGUAACUCCCUAAGGgAGG...................... len:22 al:238
.......................................................UUGUGUAACUCCCUAAGGAgGGC..................... len:23 al:1
.......................................................UcGUGUAACUCCCUAAGGAA........................ len:20 al:7
.......................................................UUGUGUAACUCCCcAAGGAA........................ len:20 al:4
.......................................................cUGUGUAACUCCCUA............................. len:15 al:1
.......................................................UUGUGUAACUCCCgAAGGAAGG...................... len:22 al:8
.......................................................UUGUGUAACUCCCUAAGa.......................... len:18 al:48
.......................................................UUGUGUgACUCCCUAAGG.......................... len:18 al:4
.......................................................UcGUGUAACUCCCUAAGGAAGG...................... len:22 al:197
.......................................................UUGUGUAACUaCCUAAGGAAGG...................... len:22 al:5
.......................................................UUGUGUAACUCCCUAAGGAAGcC..................... len:23 al:1
.......................................................UUuUGUAACUCCCUAAGGAAGG...................... len:22 al:8
.......................................................UUGUGUAACUuCCUAAGGAAGG...................... len:22 al:23
.......................................................UUGUGUAACUCCCUAAuGAAGG...................... len:22 al:16
.......................................................UUGUGgAACUCCCUAAGG.......................... len:18 al:1
.......................................................UUGUGcAACUCCCUAA............................ len:16 al:2
.......................................................UUGUGaAACUCCCUAAGGAAGG...................... len:22 al:15
.......................................................UUGUGUAACUCCCUAAGGAAGGaU.................... len:24 al:5
.......................................................UUaUGUAACUCCCUAAGGA......................... len:19 al:1
.......................................................UUGUGUgACUCCCUAAGGAA........................ len:20 al:18
.......................................................UUGcGUAACUCCCUAAGGAAGGC..................... len:23 al:4
.......................................................UUGUGUAACUCCCUAAGc.......................... len:18 al:4
.......................................................UUGUGUAACUCCCUAAGGAgG....................... len:21 al:59
.......................................................UUGUGUAACUCCCUAAGGAcGG...................... len:22 al:791
.......................................................UUGUGUgACUCCCUAAGGAAG....................... len:21 al:31
.......................................................UUGUGUAACUCCCUAAGGAuGG...................... len:22 al:32
.......................................................UUGUGUAACaCCCUAAGGAA........................ len:20 al:1
.......................................................UUGUGUAACUCCCUAAGaAAGG...................... len:22 al:21
.......................................................aUGUGUAACUCCCUAAGGAAGGC..................... len:23 al:1
.......................................................UUGUGUAcCUCCCUAAGGAAGG...................... len:22 al:12
.......................................................UUGUGgAACUCCCUAAGGAAGG...................... len:22 al:4
.......................................................UUGUGUAACUCCCUAAGcA......................... len:19 al:8
.......................................................UUGUGUAACUgCCUAAGGAAGG...................... len:22 al:1
.......................................................UUGUGUAACUCCCUAAGGAAcGC..................... len:23 al:1
.......................................................UcGUGUAACUCCCUAAGGAAG....................... len:21 al:5
.......................................................UUGUGUAACUCCCcAAGGAAGG...................... len:22 al:98
.......................................................UUGUGUAACUCCCUAAGGAA........................ len:20 al:1422
.......................................................UUGUGUAACUCCCUAAGGAAuG...................... len:22 al:20
.......................................................aUGUGUAACUCCCUAAGGAA........................ len:20 al:9
.......................................................UUGUGUAACaCCCUAAGGA......................... len:19 al:2
.......................................................UUGUGUAACUCCCUAAGGAAGc...................... len:22 al:720
.......................................................UUGUGUAACUCCCUAAGGAc........................ len:20 al:10
.......................................................UUGUGUAACUCCCUAAGuA......................... len:19 al:1
.......................................................UUGUGcAACUCCCUA............................. len:15 al:1
.......................................................UUGUGUgACUCCCUAAGGA......................... len:19 al:31
.......................................................UUGUGUAACUCCCUAAGGAu........................ len:20 al:38
.......................................................UUGUGUAgCUCCCUAAGGAA........................ len:20 al:5
.......................................................UUGUGUAACcCCCUAAGGAA........................ len:20 al:2
.......................................................UUGUGUAACUCCgUAAGGAAGG...................... len:22 al:1
.......................................................UUGUGUAACUCCCUAAaGAAGG...................... len:22 al:16
.......................................................UUGUaUAACUCCCUAAGGAAGG...................... len:22 al:46
.......................................................UUGUGUgACUCCCUAA............................ len:16 al:1
.......................................................UUGUaUAACUCCCUAAGGA......................... len:19 al:2
.......................................................UUGUGUAACUCCCUAAGGAgGG...................... len:22 al:1367
.......................................................UUGUGUAACUCCCcAAGGAAG....................... len:21 al:2
.......................................................UUGUGUAcCUCCCUAAGGAA........................ len:20 al:2
.......................................................UUGUGUAACcCCCUAAGGA......................... len:19 al:8
.......................................................UUGUGUAACUCCCUAAGGAAaG...................... len:22 al:444
.......................................................aUGUGUAACUCCCUAA............................ len:16 al:1
.......................................................UUGUGUAACUCCCUAAGGuAGG...................... len:22 al:21
.......................................................UUGUGUAACcCCCUAAGGAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCUAA............................ len:16 al:60
.......................................................UUGUGUAACUCCCUAAGGA......................... len:19 al:1886
.......................................................UUGUGUAAuUCCCUAAGGAAGG...................... len:22 al:33
.......................................................UUGUGUAACUCCCUAAGGAAGGu..................... len:23 al:260
.......................................................UUGUGUAACUCCCUAAGGAAGu...................... len:22 al:3159
.......................................................UUGUGUAACUCCCUAuGGA......................... len:19 al:4
.......................................................UUGUcUAACUCCCUAAGGAAGG...................... len:22 al:1
.......................................................UUGUuUAACUCCCUAAGGAAGG...................... len:22 al:6
.......................................................UUGUGcAACUCCCUAAGGA......................... len:19 al:2
.......................................................UUGUGUAACUCCCUAgGGAAGG...................... len:22 al:145
.......................................................UUGUGUAgCUCCCUAAGGAAGG...................... len:22 al:227
.......................................................UUGUGUAACUCCCUAAGGAcG....................... len:21 al:26
.......................................................UUGUGUAACUCaCUAAGGAAGG...................... len:22 al:4
.......................................................UUGaGUAACUCCCUAAGGAA........................ len:20 al:4
.......................................................UUGUGUAACUCCCUcAGGAAGG...................... len:22 al:6
.......................................................UUGUGUAACUaCCUAAGGAAG....................... len:21 al:1
.......................................................UUGUGUAACUCCCaAAGGAAGG...................... len:22 al:15
.......................................................UUGUGUAACUCCCUAAGGgA........................ len:20 al:16
.......................................................UUGUGUAACUCCCUAAGGAAGaC..................... len:23 al:3
.......................................................UUGUGUAACUCCCaAA............................ len:16 al:1
.......................................................UUGUGUAACUCCCUAAGGgAG....................... len:21 al:9
.......................................................UUGUGUAACUCCCUAAGGAAGGg..................... len:23 al:21
.......................................................UUGUGUAACUCCCUAcGG.......................... len:18 al:1
.......................................................aUGUGUAACUCCCUAAGGAAGG...................... len:22 al:192
.......................................................UUGUGUAgCUCCCUAAGGAAG....................... len:21 al:7
.......................................................UUGUGUAACUCCuUAAGGA......................... len:19 al:3
.......................................................UUGcGUAACUCCCUAAGGAAG....................... len:21 al:6
.......................................................UgGUGUAACUCCCUAAGGA......................... len:19 al:2
.......................................................UUGUGUAACUCCCUA............................. len:15 al:55
.......................................................UUGUGUAACUCCaUAAGGAAGG...................... len:22 al:9
.......................................................UUGUGUAACUCCCUAAGGc......................... len:19 al:3
.......................................................UUGUGUAACUCCCUAAaGA......................... len:19 al:1
.......................................................UUGUGUAACUCCCUAAGu.......................... len:18 al:9
.......................................................UUGUGUAAaUCCCUAAGGAAGG...................... len:22 al:10
.......................................................UUGUGUAACUCCCcAAGGA......................... len:19 al:4
.......................................................UUGUGUAACUuCCUAAGG.......................... len:18 al:1
.......................................................UUGUGUAACUCuCUAAGGAA........................ len:20 al:2
.......................................................UUaUGUAACUCCCUAAGGAAGG...................... len:22 al:28
.......................................................UUGUGUAACaCCCUAAGGAAGG...................... len:22 al:32
.......................................................UgGUGUAACUCCCUAAGGAAGG...................... len:22 al:7
.......................................................UUGUGUAACUCCuUAAGGAAGG...................... len:22 al:28
.......................................................UUGUGUAACUCCCUuAGGAAGG...................... len:22 al:6
.......................................................UUGUGUAACUCCCUAAGG.......................... len:18 al:143
.......................................................UUGUGUAgCUCCCUAAGGA......................... len:19 al:6
........................................................UGUGUAACUCCCUAAGGAAa....................... len:20 al:1
........................................................UGUGUAACUCCCUAAGGAAGG...................... len:21 al:30
........................................................UGUGUAACUCCCUAAGGAAGc...................... len:21 al:2
........................................................UGUGUAACUCCCUAAGGAgGG...................... len:21 al:1
........................................................UGUGUAACUCCCUAAGGAAG....................... len:20 al:2
........................................................UGUGUAACUCCCUAAGGAAGa...................... len:21 al:11
........................................................UGUGUgACUCCCUAAGGAAGG...................... len:21 al:1
........................................................UGUGUAACUCCCUAAGGAAGGa..................... len:22 al:1
........................................................UGUGUAACUCCCUAAGGAuGG...................... len:21 al:1
.........................................................GUGUAACUCCCUAAGGAAGa...................... len:20 al:2
.........................................................uUGUAACUCCCUAAGGAAGG...................... len:20 al:1
.........................................................GUGUAACUCCCUAAGGAAGG...................... len:20 al:4
..........................................................UGUAACUCCCUAAGGAAGa...................... len:19 al:1
..........................................................UGaAACUCCCUAAGGAAGG...................... len:19 al:1
...........................................................GUAACUCCCUAAGGAAGa...................... len:18 al:1