Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000001:19145766-19145858 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_757.ps.pdf
Locus Name: Cluster_757
GGAAAAAGUUGUGGUCUCUCUCCGCUCUUAAAAUCUCCUAGCUAUUGAAUAGCUAGGAGGUUUUAAAAGAGGAGAGACAACACAAGCAACCUA
((......(((((...(((((((.((.((((((((((((((((((...)))))))))))))))))).)).)))))))...)))))....)).. (-44.80)
..AAAAAGUUGUGGUCUCUCUC....................................................................... len:20 al:1
....................UCCGCUCcUAAAAUCUCCUAGCU.................................................. len:23 al:1
....................UCCGCUCUUAAAAUCUCCUAGCa.................................................. len:23 al:1
....................UCCGCUCUUAAAAUCUCCUAGCUAa................................................ len:25 al:1
....................UCCGCUCUUAAAAUCUCCa...................................................... len:19 al:1
....................UCCaCUCUUAAAAUCUCCUAGCUA................................................. len:24 al:1
....................UCCGCUCUUAAAAUCUCCUAGCUA................................................. len:24 al:3
....................cCCGCUCUUAAAAUCUCCUAGCU.................................................. len:23 al:1
....................UCCGCcCUUAAAAUCUCCUAGCU.................................................. len:23 al:2
....................cCCGCUCUUAAAAUCUCCUAGCUA................................................. len:24 al:2
.....................CCGCUCUUAAAAUCUCCUAGCUAU................................................ len:24 al:1
.....................CCGCUCUUAAAAUCUCCUAa.................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCaAGC................................................... len:20 al:2
......................CGCUCUUAAAAaCUCCUAGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCUgGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCUAGCUAUUc.............................................. len:25 al:4
......................CGCUCUUAAAAUCUCCUAGCc.................................................. len:21 al:59
......................CGCUCUUAAAAUCUCCUAuCUA................................................. len:22 al:1
......................CGCUCUUAgAAUCUCCUAGCU.................................................. len:21 al:1
......................CGCUCUUAAAAUCUCCUAGCUA................................................. len:22 al:942
......................CcCUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:1
......................CGCUCaUAAAAUCUCCUAGCUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCUuGCU.................................................. len:21 al:1
......................CGCcCUUAAAAUCUCCUAGCUAU................................................ len:23 al:6
......................CGCUCUUAAAAUCUCCUgGCUA................................................. len:22 al:9
......................aGCUCUUAAAAUCUCCUAGCU.................................................. len:21 al:1
......................CGCUCUUAAAAUCUCCUAGCUAc................................................ len:23 al:397
......................CGCUCUUgAAAUCUCCUAGCUAUU............................................... len:24 al:1
......................CGCUCUUAAAAUCUCCUAa.................................................... len:19 al:19
......................CGCUCUUAAAAUCUCCcAGC................................................... len:20 al:1
......................CGCUCUUgAAAUCUCCUAGC................................................... len:20 al:2
......................CGCUCUUAAAAUCUCCUAGuUAUU............................................... len:24 al:12
......................CGCUCUUAAgAUCUCCUAGCUAU................................................ len:23 al:9
......................CGCUCUUAAAAUCUuCUAGCUA................................................. len:22 al:1
......................CuCUCUUAAAAUCUCCUAG.................................................... len:19 al:1
......................CGCUCUUAAAAUCUCCUAGCUAaU............................................... len:24 al:11
......................CGCUCUUAAAAUCUCCUAaC................................................... len:20 al:23
......................CaCUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:18
......................CGCUCUUAAAAUCUCCUAGCUg................................................. len:22 al:31
......................CGCUCUUuAAAUCUCCUAGCUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:1605
......................CaCUCUUAAAAUCUCCUAGCUAUU............................................... len:24 al:4
......................CGCUCUUAAAAUCUCCUcGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCaUA..................................................... len:18 al:4
......................CaCUCUUAAAAUCUCCUAGCU.................................................. len:21 al:2
......................CGCUCUUAAAAUCUCCcAGCUA................................................. len:22 al:1
......................CGCUCUUAAAAUCcCCUAG.................................................... len:19 al:1
......................CGCUCUUAAAAUCUCCUuGCUA................................................. len:22 al:1
......................gGCUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:5
......................CGCUCUUAAAAUCUCCUAGuUA................................................. len:22 al:6
......................CGCUCUUAAAAUCUCuUAGCUAU................................................ len:23 al:3
......................CGCUCUUAAAAUCcCCUAGCUAU................................................ len:23 al:7
......................CGCUCUUAgAAUCUCCUAGCUAU................................................ len:23 al:4
......................CGCUCUUAAAAUCUCCUAGu................................................... len:20 al:91
......................CGCUCcUAAAAUCUCCUAGCUAU................................................ len:23 al:7
......................CuCUCUUAAAAUCUCCUAGCUA................................................. len:22 al:3
......................aGCUCUUAAAAUCUCCUA..................................................... len:18 al:2
......................CGCUCUUAAAAUCUCCaA..................................................... len:18 al:1
......................CGCUCaUAAAAUCUCCUAGCUAUU............................................... len:24 al:1
......................CaCUCUUAAAAUCUCCUAGCUA................................................. len:22 al:14
......................CGCUCUUAAAAUCUCCUAGCUAUc............................................... len:24 al:61
......................CGCUCUUAAAAUCUCCUcGCUAU................................................ len:23 al:1
......................CGCUCUcAAAAUCUCCUAGCUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCUcG.................................................... len:19 al:5
......................CGCUCUUAAAAcCUCCUAGCUAUU............................................... len:24 al:1
......................CGCUCUUAAAAUCUCCUAGCUcU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCUAGCgAU................................................ len:23 al:1
......................uGCUCUUAAAAUCUCCUAGC................................................... len:20 al:2
......................CGCUCUUAAAAUCUCCcAGCUAU................................................ len:23 al:2
......................CGCUCUUAAAAUCUCCUAGuUAU................................................ len:23 al:12
......................CGCUCUUAAAAUuUCCUAGCUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCUAGCUAUg............................................... len:24 al:7
......................CGCUCUUAAAAUCUCCa...................................................... len:17 al:1
......................CGCUCUUAAgAUCUCCUAGC................................................... len:20 al:2
......................CGCUCUUAAAAUCcCCUAGCUA................................................. len:22 al:2
......................CGCUCUUAAAAUCUCCUAGaU.................................................. len:21 al:1
......................CGCUCUUAAAAUCUCCUAGCUc................................................. len:22 al:3
......................CGCUCUUAAAAUCUCCUAGCUAa................................................ len:23 al:135
......................CGCUCUaAAAAUCUCCUAGCUA................................................. len:22 al:1
......................CGCUCUUAAAAUCUCCUAGCUAcU............................................... len:24 al:10
......................CGCUCUUAAAAUCUCCUAaCUAUU............................................... len:24 al:2
......................CGCUCUUAAAAUCUCCUAG.................................................... len:19 al:100
......................CGCUCUUAAgAUCUCCUAGCU.................................................. len:21 al:2
......................CGCUCUUAAAAcCUCCUAGCUAU................................................ len:23 al:5
......................CGCcCUUAAAAUCUCCUAGCU.................................................. len:21 al:2
......................CGCUCUUAAgAUCUCCUAGCUAUU............................................... len:24 al:2
......................CGCcCUUAAAAUCUCCUAGCUA................................................. len:22 al:4
......................CGCUCUUAAAAUCUCCUAGCUgU................................................ len:23 al:70
......................CGCUCUUAAgAUCUCCUAGCUA................................................. len:22 al:10
......................aGCUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:3
......................uGCUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:5
......................CGCUCUUAAAAUCUCC....................................................... len:16 al:2
......................CGCUCUUAgAAUCUCCUAGCUAUU............................................... len:24 al:1
......................CGCUCUUAAAAUCUCCUAGg................................................... len:20 al:5
......................CGCUCUUAAAAUCUCaUAGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCUAGCUAUUu.............................................. len:25 al:18
......................CGCUCUUAAAAcCUCCUAGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCUAGaUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCUAu.................................................... len:19 al:27
......................aGCUCUUAAAAUCUCCUAGCUAUU............................................... len:24 al:2
......................CGCUCUUAAAAUCcCCUAGC................................................... len:20 al:2
......................CGCUCUUAAAAUCUCCUAGCUuU................................................ len:23 al:25
......................CGCUCUUAAAAUCUCCUAGCgA................................................. len:22 al:5
......................CGCUCUUAAAAUCUCCUAGuU.................................................. len:21 al:2
......................uGCUCUUAAAAUCUCCUAGCU.................................................. len:21 al:1
......................CGCUCUUAAAAUCUCCUg..................................................... len:18 al:2
......................CGCUCUUAAAAUCUCCUAGCcA................................................. len:22 al:29
......................CGCUCUUAAAAUCcCCUA..................................................... len:18 al:1
......................CGCUCUUAAAAUCUCCUAGCUAUUuA............................................. len:26 al:3
......................CGCUCUUAAAAUCUCCUAGa................................................... len:20 al:56
......................CGCUCUUAAAAUCUCCUu..................................................... len:18 al:1
......................CGCUCUUAAAAUCUCCcAGCUAUU............................................... len:24 al:1
......................CGCUCUUAAAAUCUCCUgGCUAUU............................................... len:24 al:3
......................CGCUCUUAAAAUCUCCUAGCUAUUa.............................................. len:25 al:49
......................CGCUCUcAAAAUCUCCUAGCUAUU............................................... len:24 al:3
......................CGCUCUUAAAAUCUCCUA..................................................... len:18 al:96
......................CGCUCUUAAAAUCUCCUAGCUu................................................. len:22 al:6
......................CGCUCUUAAAAUCUCCUgGCUAU................................................ len:23 al:18
......................CGCUCUUAAuAUCUCCUAGC................................................... len:20 al:1
......................CGCaCUUAAAAUCUCCUAGCU.................................................. len:21 al:1
......................CGCUCUUAAAAUCUCCUAGCUuUU............................................... len:24 al:2
......................CGCUCUUAAAAUCUCCUAaCUAU................................................ len:23 al:1
......................CGCUCUUAAAgUCUCCUAGCUAU................................................ len:23 al:6
......................CGCUCUUAAAAUCUCCUuG.................................................... len:19 al:1
......................uGCUCUUAAAAUCUCCUA..................................................... len:18 al:1
......................CGCUCUUAAAAUCUCCUAaCUA................................................. len:22 al:1
......................uGCUCUUAAAAUCUCCUAGCUAUU............................................... len:24 al:5
......................CGCUCUUAAAAUCUCCU...................................................... len:17 al:6
......................CGCUCUUAAAAUCUCCUAGCUAUUGu............................................. len:26 al:1
......................gGCUCUUAAAAUCUCCUAGCUA................................................. len:22 al:2
......................CGuUCUUAAAAUCUCCUAGCUA................................................. len:22 al:1
......................aGCUCUUAAAAUCUCCUAGCUA................................................. len:22 al:5
......................gGCUCUUAAAAUCUCCUAGCUAUU............................................... len:24 al:3
......................CGCUCUUAAAAUCUCCUAGCU.................................................. len:21 al:253
......................CGCUCUUAuAAUCUCCUAGCUA................................................. len:22 al:1
......................CGCUCUUAAAAUCUCCUAGCUAUa............................................... len:24 al:99
......................CGuUCUUAAAAUCUCCUAGCUAU................................................ len:23 al:4
......................CGCUCUUAAAAUCUCCUAuCUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCUCCc...................................................... len:17 al:2
......................CGCUCUUAAAAUCUCCUAGCUAg................................................ len:23 al:85
......................CGCUCUUgAAAUCUCCUAGCUAU................................................ len:23 al:1
......................CGCUCUUAAAAUCgCCUAGCUAUU............................................... len:24 al:1
......................CGCUCUUAAAAUCUCCUAGCUAgU............................................... len:24 al:16
......................CGCaCUUAAAAUCUCCUAGCUAU................................................ len:23 al:1
......................CGCUCUUAgAAUCUCCUAGCUA................................................. len:22 al:4
......................CGCUCUcAAAAUCUCCUAGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCUAc.................................................... len:19 al:7
......................CGCUCUUAAAgUCUCCUAGC................................................... len:20 al:2
......................CGCUCUUAAAAcCUCCUAG.................................................... len:19 al:1
......................CGCUCUUAAAAUCUCCUAGCcAU................................................ len:23 al:2
......................CGCUCUUAAAAUCUaCUAGCUAUU............................................... len:24 al:1
......................CGCUCUUAAAAUCUCCUAGCUAUU............................................... len:24 al:367
......................aGCUCUUAAAAUCUCCUAGC................................................... len:20 al:2
......................CGCUCUUAAAAUCUCCUAGCaA................................................. len:22 al:10
......................CGCUCUUAAAAUCUCCUAGCg.................................................. len:21 al:36
......................CGCUCcUAAAAUCUCCUAGCUA................................................. len:22 al:1
......................CGCUCUUAAAAUCUCCUAGC................................................... len:20 al:575
......................gGCUCUUAAAAUCUCCUAGC................................................... len:20 al:1
......................CGCUCUUAAAAUCUCCUAGCa.................................................. len:21 al:108
......................uGCUCUUAAAAUCUCCUAGCUA................................................. len:22 al:8
......................CaCUCUUAAAAUCUCCUAGC................................................... len:20 al:7
.......................GCUCUUAAAAUCUCCUAG.................................................... len:18 al:3
.......................GCUCUUAAAAUCUCCUAGCcA................................................. len:21 al:5
.......................aCUCUUAAAAUCUCCUAGCU.................................................. len:20 al:1
.......................GCUCUUAAAAUCUCCUAGCUA................................................. len:21 al:23
.......................GCUCUUAAAAUCUCCUAGC................................................... len:19 al:6
.......................GCUCUUAAAAUCUCCUAGCUAU................................................ len:22 al:16
.......................GCUCUUAAAAUCUCCUAa.................................................... len:18 al:1
.......................GCUCUUAAAAUCUCCUAGCU.................................................. len:20 al:6
.......................GCUCUUAAAAUCUCCUAGCc.................................................. len:20 al:1
.......................GCUCUUAAAAUCUCCUAGCUg................................................. len:21 al:1
.......................aCUCUUAAAAUCUCCUAGCUAUU............................................... len:23 al:1
.......................GCUCUUAAAAUCUCCUAGCUgU................................................ len:22 al:2
.......................GCUCUUAAAAUCUCCUAGCUu................................................. len:21 al:1
.......................GCUCUUAAAAUCUCCUAGCUAg................................................ len:22 al:1
.......................GCUCUUAAAAUCUCCU...................................................... len:16 al:1
.......................GCUCcUAAAAUCUCCUAGCU.................................................. len:20 al:1
.......................GCUCUUAAAAUCUCCUAGCg.................................................. len:20 al:5
.......................GCUCUUAAAAUCUCCUAGCUAc................................................ len:22 al:6
.......................GCUCUUAAAAUCUCCUAGCUAUU............................................... len:23 al:1
.......................aCUCUUAAAAUCUCCUAGCUAU................................................ len:22 al:1
.......................GCUCUUAAAAUCUCCUAGCUAa................................................ len:22 al:4
.......................GCUCUUAAAAUCUCCUAGCa.................................................. len:20 al:2
........................CUCUUAAAAUCUCCUAGCU.................................................. len:19 al:1
........................CUCUUAAAAUCUCCUAGCUg................................................. len:20 al:1
........................CUCUUAAAAUCUCCUAGCUgU................................................ len:21 al:1
........................CUCUUAAAAUCUCCUAGCUAc................................................ len:21 al:1
........................CUCUUAAAAUCUCCUAGCUA................................................. len:20 al:3
........................CUCUUAAAAUCUCCUAGCUAUUa.............................................. len:23 al:1
........................CUCUUAAAAUCUCCUAGCUAUU............................................... len:22 al:1
.........................UCUUAAAAUCUCCUAGCUAU................................................ len:20 al:1
.........................UCUUAAAAUCUCCUAGCUAc................................................ len:20 al:1
.........................UCUUAAAAUCUCCUAGCUA................................................. len:19 al:1
..........................CUUAAAAUCUCCUAGCUAUg............................................... len:20 al:1
...........................UUAAAAUCUCCUAGCUAU................................................ len:18 al:2
...........................UUAAAAUCUCCUAGCUAUU............................................... len:19 al:1
..................................................AGCUAGGAGGUUUUAAAAGAGG..................... len:22 al:1
...................................................GCUgGGAGGUUUUAAAAGAGGA.................... len:22 al:1
...................................................GCUAGGAGGUUUUgAAAGAGGA.................... len:22 al:8
...................................................GCUAGGAGGUUUUAAAAGA....................... len:19 al:1
...................................................GCUAGGAGGUUUUAAAAGAGG..................... len:21 al:6
...................................................GCUAGGAGGUUUUAAAAGAGGAc................... len:23 al:3
...................................................GCUAGGAGGUUUUAAAAGAG...................... len:20 al:6
...................................................GCUAGGAGGUUUUAAAAGAGGAu................... len:23 al:34
...................................................GCUAGGAGGUUUUAAgAGAGGA.................... len:22 al:1
...................................................GCUAGGAGGUUUUAAAAGAGGA.................... len:22 al:58
...................................................GCUAGGAGGUUUUAAAAGAGGAGu.................. len:24 al:1
...................................................GCUAGGAGGUUUUAAAAGAGGu.................... len:22 al:2
...................................................GCUAGGAGGUUUUAAAAG........................ len:18 al:6
...................................................GCUAGGAGGUUUUAAAAGAGGAa................... len:23 al:4
...................................................GCUAGGAGGUUUUAAAAGAa...................... len:20 al:3
...................................................GCUAGGAGGUUUUAAAAu........................ len:18 al:1
...................................................GCUAGGAGGUUUUAAAAGAGa..................... len:21 al:4
...................................................GCUAGGAGGcUUUAAAAGAGGA.................... len:22 al:1
...................................................GCUAGGAGGUUUUgAAAGAGG..................... len:21 al:3
...................................................GCUAGGAGGUUUUAAAAGAc...................... len:20 al:1
...................................................GCUAGGAGGUUUUAAAAGAGu..................... len:21 al:2
...................................................GCUAGGAGGUUUUAAAAGAGGg.................... len:22 al:5
...................................................GCUAGGAGGUUUUgAAAGA....................... len:19 al:1
...................................................cCUAGGAGGUUUUAAAAGAGG..................... len:21 al:1
...................................................GCUAGGAGGUUUUAAAAGAGGAuA.................. len:24 al:1
....................................................CUAGGAGGUUUUAAAAGAGGA.................... len:21 al:2
....................................................CUAGGAGGUUUUgAAAGAGGA.................... len:21 al:1
....................................................CUAGGAGGUUUUAAAAGAGGAGA.................. len:23 al:6
.....................................................UAGGAGGUUUUgAAAGAGGA.................... len:20 al:4
.....................................................UAGGAGGUUUUAAAAGgGG..................... len:19 al:1
.....................................................UAGGAGGUUUUAAAAGuGGA.................... len:20 al:1
.....................................................UAGGAGGUUUUAAgAGAGGA.................... len:20 al:1
.....................................................aAGGAGGUUUUAAAAGAGGA.................... len:20 al:3
.....................................................UAGGAGGUUUUAAAAGAGa..................... len:19 al:11
.....................................................UAGGAGGUUUUAAAAGAGGAuA.................. len:22 al:1
.....................................................UAGGAGGUUUUAAAAGAGGA.................... len:20 al:122
.....................................................cAGGAGGUUUUAAAAGAGGA.................... len:20 al:4
.....................................................UAGGAGGUUUUAAAAGAGGAu................... len:21 al:48
.....................................................UAGGAGGUUUUAAAAGAGGAc................... len:21 al:10
.....................................................UgGGAGGUUUUAAAAGAGGA.................... len:20 al:1
.....................................................UAGGAGGUUUUAAAAGAGG..................... len:19 al:25
.....................................................UAGGAGGUUUUAAAAGAGGc.................... len:20 al:3
.....................................................UAGGAGGUUUUgAAAGAGG..................... len:19 al:4
.....................................................UAGGAGGUUUUAAAAGAGGAGu.................. len:22 al:1
.....................................................UAGaAGGUUUUAAAAGAGG..................... len:19 al:1
.....................................................UAGGAGGUUUUAAAAGAG...................... len:18 al:3
.....................................................UAGGAGGUUUUAAAAGAGGAG................... len:21 al:1
.....................................................UAGGAGGUUUUAAAAGA....................... len:17 al:1
.....................................................UAGGAGGUUUUAAAAGAGGg.................... len:20 al:4
.....................................................UAGGAGGUUUUAAAAGAa...................... len:18 al:1
.....................................................UAGGAGGUUUUAAAAGAu...................... len:18 al:1
.....................................................UAGGAGGUUUUAAgAGAGG..................... len:19 al:3
.....................................................UAGGAGGUUUUAAAAGAGGAa................... len:21 al:5