Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000026:1154719-1154813 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_5740.ps.pdf
Locus Name: Cluster_5740
GUAUAUUGCCACUUUACAAAUGUACUAUGUUCAUGAUCUUGCACUUAAUAGGUAAGAUCAAGUUCAUGGUAUUCUUGUGAUGUGGUUUUUCACUG
((.....(((((.((((((..((((((((..(.(((((((((.((....))))))))))).)..))))))))..)))))).))))).....)).. (-36.20)
....................UGUACUAUGUUCAUGAUCUcGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCUUGCACa.................................................. len:25 al:3
....................cGUACUAUGUUCAUGAUCUUGCAC................................................... len:24 al:1
....................UGUACUAUGUUCAUGAUCUUGCA.................................................... len:23 al:15
....................UGUACUAUGUUCAUGAUCUUaCA.................................................... len:23 al:1
....................UGUACUAUGUUCAUGAUCUUaC..................................................... len:22 al:5
....................aGUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCUUGCAC................................................... len:24 al:30
....................UGUACUAUGUUCAUGAUCU........................................................ len:19 al:7
....................UGUACUAUGUUCAUGAUCUUGCAu................................................... len:24 al:6
....................UGUACUAUGUUCAUGAUCUUGa..................................................... len:22 al:12
....................UGUACUAUGUUCAUGAUCUUGCAa................................................... len:24 al:1
....................UGUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:146
....................UGUACUgUGUUCAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCUUG...................................................... len:21 al:2
....................UGUACUAUGUUCAUGAUCUUGCACU.................................................. len:25 al:10
....................UGUACUAUGUUCAUGAUCUUGu..................................................... len:22 al:27
....................UGUACUAUGUUCAUGAUCUUGCACUU................................................. len:26 al:2
....................UGUACUAUGUUuAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCa........................................................ len:19 al:1
....................UGUACUAUGUUCAUGAUCUUcC..................................................... len:22 al:2
....................UGUACUAUGUUCAUGAUC......................................................... len:18 al:7
....................UGUACUAUGUaCAUGAUCUUGC..................................................... len:22 al:1
....................UcUACUAUGUUCAUGAUCUUGC..................................................... len:22 al:1
....................UGUACUAUGUUCAUGAUCUc....................................................... len:20 al:1
....................UGUACUAUGUUCAUGAUCUU....................................................... len:20 al:7
....................UGUACUAUGUUaAUGAUCUUGCACU.................................................. len:25 al:1
....................UGUACUAUGUUCAUGAUCUUGCACUUAAUA............................................. len:30 al:1
....................UGUACUAUGcUCAUGAUCUUGC..................................................... len:22 al:2
....................UGUACUAUGUUCAUGAUCUUGCu.................................................... len:23 al:1
....................UGUACUAUGUUCAUGAUCUUGCg.................................................... len:23 al:2
....................UGUACUAUGUUCAUGAUCUUGCACg.................................................. len:25 al:1
....................UGUACUAUGUUCAUGAUCUUGCACc.................................................. len:25 al:5
....................UGUACUAUGUUCAUGAUCc........................................................ len:19 al:1
......................UACUAUGUUCAUGAUCUUGaA.................................................... len:21 al:1
......................UACUAUGUUCAUGAUCUUGC..................................................... len:20 al:4
......................aACUAUGUUCAUGAUCUUGC..................................................... len:20 al:1
.........................UAUGUUCAUGAUCUUGCA.................................................... len:18 al:1
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCc.................... len:31 al:7
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCU.................... len:31 al:12
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCg.................... len:31 al:2
............................................UUAAUAGGUAAGAUCAAcUUCAUGGUAUUCU.................... len:31 al:1
............................................UUAAUAGGUAAGAUCAAGUUCAUGGUAUUCa.................... len:31 al:6
..................................................GGUAAGAUCAAGUUCAUGGUAUUC..................... len:24 al:1
...................................................cUAAGAUCAAGUUCAUGGUAUUCU.................... len:24 al:1
...................................................GUAAGAUCAAGUUCAUGGUAUUCa.................... len:24 al:1
....................................................UAAGAUCAAGUUCAUGGUAgUCU.................... len:23 al:6
....................................................aAAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:90
....................................................UAAGAUCAAGUUCAUGGaAU....................... len:20 al:1
....................................................UAAGAUCAAGUUCAUGGgAUUCU.................... len:23 al:23
....................................................UAAGAUCAAGcUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:14088
....................................................UAAGAUCAAGUUCAUGGUAUUCUUuU................. len:26 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUaU.................... len:23 al:37
....................................................UAAGAUCAAGUUCAUGGUAUUa..................... len:22 al:16
....................................................UAAGAUCAAGUUCAUGGUAUcC..................... len:22 al:1
....................................................UAAGAUCAAGUaCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUg..................... len:22 al:1
....................................................UAAGgUCAAGUUCAUGGUAUUCU.................... len:23 al:46
....................................................UAAGAUCAAGUUCAUGGUAUUCUg................... len:24 al:8
....................................................cAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:9
....................................................UAAGAUCAAGUUCAUGGU......................... len:18 al:6
....................................................UAAGAUCAAGUcCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUA........................ len:19 al:6
....................................................UAAGAUCgAGUUCAUGGUAUUCU.................... len:23 al:49
....................................................UAAGAUCAAGUUCAUGGUAUUgU.................... len:23 al:9
....................................................UuAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:10
....................................................UAAGAUCAAGUUCAUGGUAUUCg.................... len:23 al:1096
....................................................UAAGAUCAAGUUCAUGGaA........................ len:19 al:1
....................................................UAAGAUCAAGUUCAUaGUAUUCU.................... len:23 al:8
....................................................UAAGAUCAAGUUCAUGGUAcUCU.................... len:23 al:27
....................................................UAAGAUCAAGUUCgUGGUAUUCU.................... len:23 al:51
....................................................UAAGAcCAAGUUCAUGGUAUUC..................... len:22 al:2
....................................................UAAGAUCAAGUUCAUGGUAUc...................... len:21 al:3
....................................................UAAGAUCAAGUUCAUGGaAUUCU.................... len:23 al:10
....................................................UAAGAUCcAGUUCAUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUcUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGcUAUUCU.................... len:23 al:1
....................................................UAAGuUCAAGUUCAUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUAaUCU.................... len:23 al:1
....................................................UAAGAgCAAGUUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAaUUCAUGGUAUUCU.................... len:23 al:5
....................................................UAAGAUCAAGUUCAUGGUAUUCUU................... len:24 al:32
....................................................UAAGAUCuAGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUUCAUGGUAUaCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:304
....................................................UAAaAUCAAGUUCAUGGUAUUCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCAUGGUAU....................... len:20 al:4
....................................................UAAGAUCAAGUUCAgGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUgCAUGGUAUUCU.................... len:23 al:3
....................................................UAAGAUCAAGUUCcUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAgGUUCAUGGUAUUC..................... len:22 al:1
....................................................UAcGAUCAAGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGcUCAUGGUAUUCU.................... len:23 al:32
....................................................UAAGAUCAAGUUuAUGGUAUUCU.................... len:23 al:10
....................................................UAAGAcCAAGUUCAUGGUAUUCU.................... len:23 al:51
....................................................cAAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:130
....................................................UAAGAUCAuGUUCAUGGUAUUCU.................... len:23 al:4
....................................................UAAGAUCAAGUUCAUGGcAUUC..................... len:22 al:5
....................................................UcAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:8
....................................................UAAGAUCAAGUUCAcGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUuUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUCa.................... len:23 al:3099
....................................................UAgGAUCAAGUUCAUGGU......................... len:18 al:1
....................................................UAAGAUCAgGUUCAUGGUAUUCU.................... len:23 al:57
....................................................UAAGAUCAAGUUCAaGGUAUUCU.................... len:23 al:11
....................................................UAAGAUCAAGUcCAUGGUAUUCU.................... len:23 al:29
....................................................UAAGAUCAAGUUCAUGGcAUUCU.................... len:23 al:23
....................................................UAAGAUCAAGUUCAcGGUAUUCU.................... len:23 al:33
....................................................UAAGAUCAAGUUCAUGGUAc....................... len:20 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUCUUc.................. len:25 al:1
....................................................UAgGAUCAAGUUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUcGUAUUCU.................... len:23 al:1
....................................................UAuGAUCAAGUUCAUGGUAUUCU.................... len:23 al:6
....................................................UAAuAUCAAGUUCAUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUuAAGUUCAUGGUAUUCU.................... len:23 al:5
....................................................UAAGAUCAAGUUCAUGGUAUUCUa................... len:24 al:358
....................................................UAAGAUCAAGUUCAUGaUAUUCU.................... len:23 al:15
....................................................UAAGAUCAAGUUCuUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUAUU...................... len:21 al:14
....................................................UAAGAUaAAGUUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAaUUCAUGGUAUUC..................... len:22 al:3
....................................................UAAGAUCAAGUUCAUuGUAUUCU.................... len:23 al:6
....................................................UAAGAUCgAGUUCAUGGUAUU...................... len:21 al:1
....................................................UAAGgUCAAGUUCAUGGUAUUC..................... len:22 al:5
....................................................UAAGAUCAAGUUCAUGuUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUCc.................... len:23 al:3511
....................................................UAAGAUCAAGUUCAUGGUAUcCU.................... len:23 al:24
....................................................UAAGAUCAAGUUCAUGGUAUUuU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUCaU................... len:24 al:3
....................................................UAAGAUCAAGUUCAUGGa......................... len:18 al:6
....................................................UAAGAUCAAGUUCAUGGUcU....................... len:20 al:1
....................................................UAAGAaCAAGUUCAUGGUAUUCU.................... len:23 al:2
....................................................UAAGAUCAAGUUCAUGGUAUUCUc................... len:24 al:5
....................................................UAAGAUCAAGUUCAUGGUAUgCU.................... len:23 al:6
....................................................UAAGAUCAAGUUCAUGGUgUUC..................... len:22 al:3
....................................................UAAGAUCAAGgUCAUGGUAUUCU.................... len:23 al:1
....................................................UAAGAUCAAGUUCgUGGUAUUC..................... len:22 al:3
....................................................UAAGAUCAAGUUCAcGGUA........................ len:19 al:1
....................................................UAgGAUCAAGUUCAUGGUAUUCU.................... len:23 al:43
....................................................UAAGAUCAAGgUCAUGGUAUUC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUAUUu..................... len:22 al:6
....................................................UAAGAUCAAGUUCAUGuUAUUC..................... len:22 al:1
....................................................aAAGAUCAAGUUCAUGGUAUUC..................... len:22 al:2
....................................................UAAGAUCAAGUUCAUGGUAUaC..................... len:22 al:1
....................................................UAAGAUCAAGUUCAUGGUgUUCU.................... len:23 al:53
....................................................UgAGAUCAAGUUCAUGGUAUUCU.................... len:23 al:43
.....................................................uAGAUCAAGUUCAUGGUAUUCU.................... len:22 al:2
.......................................................GAUCAAGUUCAUGGUAUUCU.................... len:20 al:1
.......................................................GAUCAAGUUCAUGGUAUUCa.................... len:20 al:1