Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000021:4351817-4351909 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_5253.ps.pdf
Locus Name: Cluster_5253
GAUUAUCAACCUGGAUAACUGGACUGAUAUUCACCAAGUGAUUAAUAUUUACUCAUUUGCUGAUUAUCAGACCAGUCACUAGGCAUCUAGCUC
.........(((((...(((((.((((((.(((.(((((((.(((...))).))))))).))).)))))).)))))..))))).......... (-30.20)
..................CUGGACUGAUAUUCACCAAGUGAUU.................................................. len:25 al:1
.....................GACUGAUAUUCACCAAGUGAUUA................................................. len:23 al:1
......................cCUGAUAUUCACCAAGUG..................................................... len:18 al:1
......................ACUGAUAUUCACCAAGUGAU................................................... len:20 al:2
......................ACUGAUAUUCACCAAGUGg.................................................... len:19 al:2
......................ACUGAUAUcCACCAAGUG..................................................... len:18 al:2
......................ACUGAUAUUCACCAAG....................................................... len:16 al:1
......................ACaGAUAUUCACCAAGUGAUU.................................................. len:21 al:1
......................ACUGAUAUUCACCAAGUGAUc.................................................. len:21 al:6
......................cCUGAUAUUCACCAAGUGAUU.................................................. len:21 al:2
......................ACUuAUAUUCACCAAGUGA.................................................... len:19 al:1
......................ACUGAUAUUCACCAAGUGAcU.................................................. len:21 al:1
......................ACUGgUAUUCACCAAGUGA.................................................... len:19 al:1
......................ACUGAUAUUCACCAAGUa..................................................... len:18 al:9
......................ACUGAUAUUCACCAAGUGAaU.................................................. len:21 al:1
......................ACUGAUAUUCACCAAGUGAUUA................................................. len:22 al:10
......................ACUGAUAUUCACCAAGUGAUa.................................................. len:21 al:2
......................ACUGAUAcUCACCAAGUGA.................................................... len:19 al:1
......................ACUGAUAUUCACCAAGUGAUU.................................................. len:21 al:31
......................ACUGAUAUUCACCAAGUGA.................................................... len:19 al:16
......................ACUGAUAUUCACCAAGUG..................................................... len:18 al:34
......................ACUGAUAUUCACCAAGcG..................................................... len:18 al:1
......................ACUGAUAUUCACCAAGUGAUaA................................................. len:22 al:1
.........................................UUAAUAUUUACUCAUUUGC................................. len:19 al:1
...................................................CUCAUUUGCUGAUUAUCAGACCAa.................. len:24 al:1
...................................................CUCAUUUGCUGAUUAUCAGACCAu.................. len:24 al:1
...................................................CUCAUUUGCUGAUUAUCAGACCA................... len:23 al:7
...................................................CUCAUUUGCUGAUUAUCAGACCc................... len:23 al:1
...................................................CUCAUUUGCUGAUUAUCAGACC.................... len:22 al:7
...................................................CUCAUUUGCUGAUUAUCAGACa.................... len:22 al:5
...................................................CUCAUUUGCUGAUUAUCAGgCC.................... len:22 al:2
...................................................CUCAUUUGCUGAUUAUCAGAC..................... len:21 al:1
...................................................CUCAUUUGCUGAUUAUCAGACCg................... len:23 al:2
...................................................CUCAUUUGCUGAUUAUCAGACCAc.................. len:24 al:1
...................................................CaCAUUUGCUGAUUAUCAGACC.................... len:22 al:1
....................................................UCAUUUGCUGAUUAUCAGACCAc.................. len:23 al:1