Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000018:4564884-4564976 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_4754.ps.pdf
Locus Name: Cluster_4754
UAAGGUAUAUCUACAGCUGAGAUGUGAAAACAAAGAAGGUGAACAUUUAGUUAACCUUAUUUGUCUUCACAUAUCAGCUGUUGGAAGGAGAAA
.........(((((((((((.(((((((.(((((.(((((.(((.....))).))))).))))).))))))).))))))).))))........ (-35.10)
UAAGGUAUAUCUgCAGCUGAG........................................................................ len:21 al:1
..AGGUAUAUCUgCAGCUGAG........................................................................ len:19 al:1
....................GAUGUGAAAACAAAGAAGGUGA................................................... len:22 al:1
.....................AUGUGAAAgCAAAGAAGGUGAAC................................................. len:23 al:1
.....................AUGUGAAAACAAAGAAGGUGAg.................................................. len:22 al:2
.....................AUGUGAAAACAAAGAAGGUGAA.................................................. len:22 al:12
.....................AUGUGAAAACAAAGAAGGUGAAC................................................. len:23 al:79
.....................AgGUGAAAACAAAGAAGGU..................................................... len:19 al:1
.....................AUGUGAgAACAAAGAAGGUGAAC................................................. len:23 al:1
.....................AUGUGAAAACAAAGAAGGUGAACu................................................ len:24 al:3
.....................AgGUGAAAACAAAGAAGGUGAA.................................................. len:22 al:5
.....................AUGcGAAAACAAAGAAGGUGAAC................................................. len:23 al:1
.....................AUGUGAAAACAAAGAAGGUGA................................................... len:21 al:8
.....................AUGUGAAAACAAAGAAGGUGAgC................................................. len:23 al:1
.....................AUGUGgAAACAAAGAAGGUGAA.................................................. len:22 al:1
.....................AUGUaAAAACAAAGAAGGUGAACA................................................ len:24 al:1
.....................AUGUGAAAACAAAGAAGGUGAACA................................................ len:24 al:44
.....................AUGUGAAAACAAAGAAGGUG.................................................... len:20 al:1
.....................AUGUGAAAACAAAGAAGGUGAACg................................................ len:24 al:3
.....................AgGUGAAAACAAAGAAGGUGAACA................................................ len:24 al:1
.....................AUGUGAAAcCAAAGAAGGUGAA.................................................. len:22 al:2
.....................AUGUGAAAACAAAGAAGGUGAAu................................................. len:23 al:8
.....................AgGUGAAAACAAAGAAGGUG.................................................... len:20 al:1
.....................AUGUGAAAACAAAGAAGGUGgAC................................................. len:23 al:1
.....................AgGUGAAAACAAAGAAGGUGAAC................................................. len:23 al:12
......................cGUGAAAACAAAGAAGGUGAAC................................................. len:22 al:1
......................UGUGAAAACAAAGAAGGUGAAa................................................. len:22 al:1
......................UGUGAAAACAAAGAAGGUGAA.................................................. len:21 al:10
......................UGUGAAAACAAAGAAGGUGAACc................................................ len:23 al:2
......................UGUGAAAACAAAGAAGGUGAAu................................................. len:22 al:1
......................UGcGAAAACAAAGAAGGUGAAC................................................. len:22 al:1
......................UGUGAAAACAAAGAAGGUGAAC................................................. len:22 al:71
......................UGUGAAAACAAAGAAGGUGAg.................................................. len:21 al:1
......................UGUGAAAACAAAGAgGGUGAA.................................................. len:21 al:1
......................UGUGAAAACgAAGAAGGUGAAC................................................. len:22 al:1
......................UGUGAAAACAAAGAAGGUGAgC................................................. len:22 al:1
......................UGUGAAAACAAAGAAGGUGgAC................................................. len:22 al:2
......................UGUGAAAACAAAGAAGGUGAACu................................................ len:23 al:2
......................UGUGAAAACAAAGAAGGUGAACA................................................ len:23 al:20
......................aGUGAAAACAAAGAAGGUGAACA................................................ len:23 al:1
......................UGUGAAAACAAAGAAGGUGA................................................... len:20 al:11
........................UGAAAACAAAGAAGGUGAAu................................................. len:20 al:1
........................UGAAAACAAAGAAGGUGAAC................................................. len:20 al:10
........................UGAAAACAAAGAAGGUGAACA................................................ len:21 al:2
...................................................UAACCUUAUUUGUCUUCACAc..................... len:21 al:3
...................................................UAACCUUAUUUGUCUUCACAUg.................... len:22 al:5
...................................................UAACCUUAUUUGUCUUCACAUA.................... len:22 al:6
...................................................UAACCUUAUUUGUCUUCACAUAa................... len:23 al:1
...................................................UAACCUUAUUUGUCUUCACAg..................... len:21 al:2
...................................................UAACCUUAUUUGUCUUCACAUgU................... len:23 al:143
...................................................UAACCUUAUUUGUCUUCACAU..................... len:21 al:13
...................................................UAACCUUAUUUGUCUUCACA...................... len:20 al:2
...................................................UAACCUUAUUUGUCUUCACAa..................... len:21 al:1
...................................................UAACCUUAUUcGUCUUCACAUAU................... len:23 al:1
...................................................UAACCUUAUUUGUCUUCAC....................... len:19 al:4
...................................................UAACCUUAUUUGUCUUCACAUgUC.................. len:24 al:4
...................................................UAACCUUAUUUGUCUUCACAUAU................... len:23 al:4
...................................................UAACCUUAUUUGUCUUCACg...................... len:20 al:1
...................................................UAACCUUAUUUGUCUUCAu....................... len:19 al:2
....................................................AACCUUAUUUGUCUUCACAUgU................... len:22 al:6