Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000016:7555639-7555733 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_4439.ps.pdf
Locus Name: Cluster_4439
GAGAAAUUUUGUCUGGCAUAUGGUGGGCUGUUGGAACUUGUAUUUUUAUGAUAUCAGUCCCACCAGCUCACCAAUAUGCUAGAUGAUAUUAUGCA
....(((.((((((((((((((((((((((.(((.(((.(((((.....))))).))).))).))))))))).))))))))))))).)))..... (-42.80)
.AcAAAUUUUGUCUGGCAUAU.......................................................................... len:20 al:3
..cAAAUUUUGUCUGGCAUAU.......................................................................... len:19 al:1
....................UGGUGGGCUGUUuGAACUUGU...................................................... len:21 al:31
....................UGGUGGGCUGUUuGAACUUGUAU.................................................... len:23 al:5
....................UGGUGGGCUGUUuGAACUUG....................................................... len:20 al:3
....................UGGUGGGCUGUUuGAACUUGUAUU................................................... len:24 al:1
....................UGGUGGGCUGUUuGAACUU........................................................ len:19 al:4
....................UGGUGGGCUGUUuGAACUUGUA..................................................... len:22 al:84
.....................GGUGGGCUGUUGGAACUUGUAUa................................................... len:23 al:3
.....................GGUGGGCUGaUGGAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAuCUUGUA..................................................... len:21 al:477
.....................GGUGGGCUGUUuGAACUUGUAUUUUUAUG............................................. len:29 al:1
.....................GGUGGGCUGUUGGAACUUGUAUUUU................................................. len:25 al:1
.....................GaUGGGCUGUUGGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUGGAACUUGUAaU................................................... len:23 al:5
.....................GGUGGGCUGUUGGAACUUu....................................................... len:19 al:1
.....................GGUGGGCUGUUGGAACUc........................................................ len:18 al:5
.....................GGUGGGCUGUUGGAuCUUGUAU.................................................... len:22 al:84
.....................GGUGGGCUGUUGGAACUUcU...................................................... len:20 al:1
.....................GGUGGGCUGUUGGAACcUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUcGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUcGGAACUUGUA..................................................... len:21 al:1
.....................GGUGaGCUGUUGGAACUUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUGGAACgU........................................................ len:18 al:1
.....................GGUGGGCUGUUGGAACUUa....................................................... len:19 al:4
.....................GGUGGaCUGUUGGAACUUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUGGAACUUGU...................................................... len:20 al:308
.....................GGUGGGCUGUUGGAACUUGg...................................................... len:20 al:24
.....................GGUGGGCUGcUGGAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAACUUGUAg.................................................... len:22 al:3
.....................cGUGGGCUGUUGGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUGGAACUa........................................................ len:18 al:4
.....................GGUGGGCUGUUuGAACUU........................................................ len:18 al:38
.....................GGUGGGCUGUUGGAuCUUGUAUU................................................... len:23 al:6
.....................GGUGGGCUGUUGGAACUUG....................................................... len:19 al:8
.....................GGUGGGCUGUUGGAACUcGUA..................................................... len:21 al:1
.....................GGUGGGCcGUUGGAACUUGU...................................................... len:20 al:1
.....................uGUGGGCUGUUGGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUGGAuCUUG....................................................... len:19 al:23
.....................GGUGGGCUGUUGGAACUUuU...................................................... len:20 al:2
.....................GGUGGGCUGUUGGAACUUGUAaUU.................................................. len:24 al:1
.....................GGUGGGCUGUUGGAACUU........................................................ len:18 al:10
.....................GGcGGGCUGUUGGAACUUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUGGAACUUGUAU.................................................... len:22 al:29
.....................GGUGGGCUGUUGGAACUUGUAc.................................................... len:22 al:3
.....................GGUGGGCUGUUGcAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAACUUGcA..................................................... len:21 al:11
.....................GGUGGGCUGUUGGAAuUUGU...................................................... len:20 al:5
.....................GGUGGGCUGUUaGAACUUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUGGAACUUGc...................................................... len:20 al:52
.....................GGUGGGCUGUUaGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUuGAACUUGUAU.................................................... len:22 al:87
.....................GGUGGGCUGUUGGAACUUGUu..................................................... len:21 al:9
.....................GGUGGGCUGUUGGAuCUU........................................................ len:18 al:26
.....................GGUGGGCUGUUGGAACUUGa...................................................... len:20 al:16
.....................GGUGGGCUGUUGGAACUUGUAUU................................................... len:23 al:2
.....................GGUGGGCUGUcGGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCgGUUGGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUGGAuCUUGUAUUU.................................................. len:24 al:3
.....................GGUGGGCUGUUuGAACUUGUAUUUU................................................. len:25 al:1
.....................uGUGGGCUGUUGGAACUUGUA..................................................... len:21 al:1
.....................GGUaGGCUGUUGGAACUUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUGGAcCUUGUA..................................................... len:21 al:3
.....................GGUGGGCUGUUGGAACUUGUA..................................................... len:21 al:952
.....................GGUGGuCUGUUGGAACUUGUAU.................................................... len:22 al:1
.....................GGUGGGCUGUUGGAcCUUGU...................................................... len:20 al:2
.....................GGUGGGCUGUUcGAACUUGUA..................................................... len:21 al:6
.....................GGUGGuCUGUUGGAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAACUUGgA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAACUUGUAUaU.................................................. len:24 al:7
.....................GGUGGGCUGUUGGAACUUGUg..................................................... len:21 al:52
.....................GGUGGGCUGUUuGAACUUGUAUUU.................................................. len:24 al:4
.....................GGUGGGCUGUUGGgACUUGUA..................................................... len:21 al:3
.....................GGUGGGCUGUUuGAACUUGUAUU................................................... len:23 al:10
.....................GGUGGGCUGUUGGAgCUUGU...................................................... len:20 al:2
.....................aGUGGGCUGUUGGAACUUGU...................................................... len:20 al:5
.....................GGUGGGCUGUUuGAACUUG....................................................... len:19 al:16
.....................GGUGGGCUaUUGGAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGAACUUaU...................................................... len:20 al:3
.....................GGUGGGCUGUUGGAACUcGU...................................................... len:20 al:4
.....................GGUGGGCUGUUGaAACUUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUuGAACU......................................................... len:17 al:1
.....................GGUGGGCUGUUGGAACUUGUAgU................................................... len:23 al:1
.....................aGUGGGCUGUUGGAACUUGUA..................................................... len:21 al:19
.....................GGUGGGCUGUUuGAACUUGU...................................................... len:20 al:477
.....................GGUGGGCUGUUGGAACUUGUAa.................................................... len:22 al:20
.....................GGUGGGCUGUUGGAgCUUGUA..................................................... len:21 al:2
.....................GGUGGGCUGUUGGAACaUGUA..................................................... len:21 al:1
.....................GGUGGGCUGUUGGgACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUuGAACUUGUA..................................................... len:21 al:1661
.....................GGUGGGuUGUUGGAACUUGU...................................................... len:20 al:1
.....................GGUGGGCUGUUGGAuCUUGU...................................................... len:20 al:1221
.....................GGUGGGCUGUUGGAuCUUGUAUUUUUAUGAU........................................... len:31 al:1
.....................GGUGGGCUGUUGGAAuUUGUA..................................................... len:21 al:3
.....................GGUGGGCUGUUcGAACUUG....................................................... len:19 al:1
......................GUGGGCUGUUuGAACUUGU...................................................... len:19 al:2
......................GUGGGCUGUUuGAACUUGUA..................................................... len:20 al:1
......................GUGGGCUGUUGGAuCUUGU...................................................... len:19 al:5
......................GUGGGCUGUUGGAACUUGU...................................................... len:19 al:5
......................GUGGGCUGUUGGAuCUUGUAU.................................................... len:21 al:1
.......................UGGGCUGUUGGAACUUGUA..................................................... len:19 al:1
.......................UGGGCUGUUuGAACUUGUA..................................................... len:19 al:1
.......................UGGGCUGUUuGAACUUGUAU.................................................... len:20 al:1
.......................UGGGCUGUUuGAACUUGUAUUUUUAUGAUA.......................................... len:30 al:1
.......................UGGGCUGUUuGAACUUGU...................................................... len:18 al:1
.......................UGGGCUGUUGGAACUUGUAUc................................................... len:21 al:1
.......................UGGGCUGUUGGAACUUGU...................................................... len:18 al:1
.......................UGGGCUGUUGGAuCUUGUA..................................................... len:19 al:1
.......................UGGGCUGUUuGAACUUGUAUU................................................... len:21 al:1
.......................UGGGCUGUUGGAACUUGUAU.................................................... len:20 al:2
..........................................UUUUUAUGAUAUCAGUCCCACCAGCUCACCA...................... len:31 al:22
..........................................UUUUUAUGAUAUCAGUCCCACCAGCUCACa....................... len:30 al:2
..........................................UUUUUAUGAUAUCAGUCCCACCAGCUCACCg...................... len:31 al:10
..........................................UUUUUAUGAUAUCAGUCCCACCAGCUCACC....................... len:30 al:1
...........................................UUUUAUGAUAUCAGUCCCACCAGCUCACCg...................... len:30 al:1
..............................................UAUGAUAUCAGUCCCACCAGCUCACCA...................... len:27 al:1
...................................................aAUCAGUCCCACCAGCUCACCA...................... len:22 al:1
...................................................UAUCAGUCCCACCAGCUCACCA...................... len:22 al:3
...................................................UAUCAGUCCCACCAGCUC.......................... len:18 al:1
...................................................UAUCAGUCCCACCAGCUCACC....................... len:21 al:3
....................................................AUCAGUCCCACCAGCUCACCAgU.................... len:23 al:1
....................................................cUCAGUCCCACCAGCUCACCAAU.................... len:23 al:2
....................................................cUCAGUCCCACCAGCUCACCA...................... len:21 al:1
....................................................AUCAGUCCCACCAGCUCACCAAUc................... len:24 al:2
....................................................AUCAGUCCCACCAGCUCACCAAUu................... len:24 al:10
....................................................AUCAGUCCCACCAGCUCACCAAc.................... len:23 al:2
....................................................AUCAGUCCCACCAGCUCACCA...................... len:21 al:1
....................................................AUCAGUCCCACCAGCUCACCAAU.................... len:23 al:6
.....................................................UCAGUCCCACCAGCUaACCAAU.................... len:22 al:2
.....................................................UCAGUCCCACCAGCcCACCAAU.................... len:22 al:17
.....................................................UCAGUCCCACCAGCUCAg........................ len:18 al:1
.....................................................UCAGUCCCACCAGCUCACCAAa.................... len:22 al:166
.....................................................UCAGUCCCcCCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAGCUCACCAg..................... len:21 al:20
.....................................................UCAGUCCCACCAaCUCACCAAU.................... len:22 al:15
.....................................................UCAaUCCCACCAGCUCACCAAU.................... len:22 al:2
.....................................................UCAGUCCCACCgGCUCACC....................... len:19 al:1
.....................................................UCAGUaCCACCAGCUCACCAAUA................... len:23 al:2
.....................................................UCAGUCCCACCAGCUCACu....................... len:19 al:27
.....................................................UCAGUCCCACCAGuUCACCAAUA................... len:23 al:1
.....................................................UCAGcCCCACCAGCUCACCAAU.................... len:22 al:8
.....................................................UCAGUCCCACCAGCUCACCAAUuU.................. len:24 al:34
.....................................................UCAGUCCCACCAGCUCACCAAUu................... len:23 al:2393
.....................................................UCAGUCCCACCAGCUCACCAAUA................... len:23 al:170
.....................................................UCAGUCCCACCAGCUCAa........................ len:18 al:1
.....................................................UCAGUCCCACCAGCUCACuAAU.................... len:22 al:2
.....................................................aCAGUCCCACCAGCUCACCA...................... len:20 al:7
.....................................................UCAGUCCCACCAGCUCAgC....................... len:19 al:1
.....................................................UCAGUCCCACCAGCUCAuCAA..................... len:21 al:1
.....................................................cCAGUCCCACCAGCUCACCAAU.................... len:22 al:43
.....................................................UCAGUCCCACCAGCUCAaCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAGCUCACCAAUg................... len:23 al:32
.....................................................UCcGUCCCACCAGCUCACCAAU.................... len:22 al:3
.....................................................UCAGUCCCACCAGCUCACCu...................... len:20 al:5
.....................................................UCAGUCCCACCAGCUCACCAAaA................... len:23 al:1
.....................................................UCAGUCCCACCAaCUCACCAA..................... len:21 al:1
.....................................................UCAGUCCCACCAGCUCACC....................... len:19 al:154
.....................................................UCAGUCCCACCAGCUCACCAu..................... len:21 al:16
.....................................................UCAGUCCCACCAcCUCACCA...................... len:20 al:14
.....................................................UCAGUCCCACCAGCUCgCCAAUA................... len:23 al:1
.....................................................UCgGUCCCACCAGCUCACCAAU.................... len:22 al:16
.....................................................UCAGUCuCACCAGCUCACCA...................... len:20 al:1
.....................................................UCAGcCCCACCAGCUCACC....................... len:19 al:1
.....................................................UCAGUaCCACCAGCUCACCA...................... len:20 al:1
.....................................................UCAGUCCCACCAGCUCACaA...................... len:20 al:5
.....................................................UCAGUCCCuCCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAaCUCACCAAUA................... len:23 al:2
.....................................................UCAGUCCCACCAGCUCACCAAcA................... len:23 al:2
.....................................................UCAGUCCCACCAcCUCACCAA..................... len:21 al:8
.....................................................UCAGUCCCACCAGCUCA......................... len:17 al:1
.....................................................cCAGUCCCACCAGCUCACCAA..................... len:21 al:5
.....................................................UCAGUCCCACCAGuUCACCA...................... len:20 al:1
.....................................................UCAGUCCCACCAGCUCACg....................... len:19 al:4
.....................................................UCAGUCCCACCgGCUCACCAA..................... len:21 al:1
.....................................................cCAGUCCCACCAGCUCACCA...................... len:20 al:10
.....................................................UCAGUCCCACCAGCUuACCAAU.................... len:22 al:4
.....................................................UCAGUCCCACCAGCUCACgA...................... len:20 al:1
.....................................................UCAGUCCCACCAGCUCACa....................... len:19 al:47
.....................................................UCAGUCCCACCAGCUCACCAA..................... len:21 al:323
.....................................................UCAGUaCCACCAGCUCACCAA..................... len:21 al:2
.....................................................aCAGUCCCACCAGCUCACCAAU.................... len:22 al:25
.....................................................cCAGUCCCACCAGCUCACCAAUA................... len:23 al:2
.....................................................UCAGUCCCgCCAGCUCACCAAU.................... len:22 al:11
.....................................................UCAGUCCCACCAGCUCACCAAUc................... len:23 al:395
.....................................................UCAGUCCCACCAGCUCAuCAAU.................... len:22 al:6
.....................................................UCAGUCCaACCAGCUCACCA...................... len:20 al:1
.....................................................UCAGUCCCACCAGCcCACCAA..................... len:21 al:1
.....................................................UCAGUCCCACCAGCUCACgAAU.................... len:22 al:1
.....................................................UCgGUCCCACCAGCUCACCAA..................... len:21 al:1
.....................................................UCAGUCCCACgAGCUCACCAAUA................... len:23 al:1
.....................................................UCAGUCCCACCAGCUCAC........................ len:18 al:7
.....................................................UCAGUCCCACCAcCUCACC....................... len:19 al:5
.....................................................UCAGUCCCACuAGCUCACCAAU.................... len:22 al:3
.....................................................UCAGaCCCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAGCUCACCAc..................... len:21 al:3
.....................................................aCAGUCCCACCAGCUCACC....................... len:19 al:2
.....................................................UCAGUCCCACCAGCUCACaAAU.................... len:22 al:5
.....................................................UCAGUCCCACCAGCUCACCAcU.................... len:22 al:6
.....................................................UCAGUCCCACCAGCUCACgAA..................... len:21 al:1
.....................................................UCgGUCCCACCAGCUCACCA...................... len:20 al:2
.....................................................UCAGUCCCACCgGCUCACCAAU.................... len:22 al:2
.....................................................UCAGUCCCACCAGCUCACCAcUA................... len:23 al:1
.....................................................UCAGUCCCACCAGCUCACCAgU.................... len:22 al:127
.....................................................UCAGUCCCACCAGCcCACCA...................... len:20 al:3
.....................................................UCAGUCCCACCAcCUCACCAAUA................... len:23 al:7
.....................................................UCAGUCCCACCAGCUCAgCAAU.................... len:22 al:2
.....................................................UCAGUCCCACCAGCUCACCA...................... len:20 al:692
.....................................................cCAGUCCCACCAGCUCACC....................... len:19 al:4
.....................................................UCcGUCCCACCAGCUCACC....................... len:19 al:4
.....................................................UuAGUCCCACCAGCUCACCA...................... len:20 al:1
.....................................................UaAGUCCCACCAGCUCACCA...................... len:20 al:1
.....................................................UCAGUCCCACCAGCaCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAGCUCgCCAAU.................... len:22 al:14
.....................................................UaAGUCCCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCAuCAGCUCACCAAU.................... len:22 al:4
.....................................................UCAGcCCCACCAGCUCACCA...................... len:20 al:3
.....................................................UCAGUCCCgCCAGCUCACCAA..................... len:21 al:1
.....................................................UCAGUCCCACCAGCUCACCgAU.................... len:22 al:6
.....................................................UCAGUCCCACCAGCUCACCg...................... len:20 al:90
.....................................................UCAGUgCCACCAGCUCACCAAU.................... len:22 al:5
.....................................................UCAGUCCCACCAGCUCACCAuUA................... len:23 al:3
.....................................................UCAGUCCCACCAGCUCACCAAc.................... len:22 al:669
.....................................................UCAGUCCCACCAGCUCACCAAgA................... len:23 al:1
.....................................................UCAGUCCCACCAGCaCACCA...................... len:20 al:2
.....................................................UCAGUCCCACCAGCUCACCAAg.................... len:22 al:124
.....................................................UCAGUCCaACCAGCUCACCAAU.................... len:22 al:1
.....................................................gCAGUCCCACCAGCUCACCAAU.................... len:22 al:2
.....................................................UCAGUCCCACCAGCUCACCgA..................... len:21 al:2
.....................................................UCAGUCCCACCgGCUCACCA...................... len:20 al:2
.....................................................cCAGUCCCACCAGCUCAC........................ len:18 al:1
.....................................................UCAGUCCCACCAGCUCACuA...................... len:20 al:4
.....................................................UCAGUCCCgCCAGCUCACCA...................... len:20 al:1
.....................................................UCAGUCuCACCAGCUCACCAAU.................... len:22 al:3
.....................................................UCAGUCCCACCAcCUCACCAAU.................... len:22 al:94
.....................................................UgAGUCCCACCAGCUCACC....................... len:19 al:1
.....................................................UCAGUCCCACCAGCUCAu........................ len:18 al:2
.....................................................UCAuUCCCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGcCCCACCAGCUCACCAA..................... len:21 al:1
.....................................................UCAGUCCCACCAaCUCACCA...................... len:20 al:6
.....................................................UCAGUCCCACCuGCUCACCAAU.................... len:22 al:4
.....................................................UCAGUCCCACCAGCUCACCAAU.................... len:22 al:3822
.....................................................aCAGUCCCACCAGCUCACCAA..................... len:21 al:2
.....................................................UCAGUCCCACCAGCUCgCCA...................... len:20 al:1
.....................................................UCAGUCCCACCAGCUCACCAuU.................... len:22 al:5
.....................................................UuAGUCCCACCAGCUCACCAAU.................... len:22 al:7
.....................................................UCAGUaCCACCAGCUCACCAAU.................... len:22 al:5
.....................................................UCAGUCaCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAGCUCgCCAA..................... len:21 al:2
.....................................................UCAGUCCCACCAGCUCACCgAUA................... len:23 al:1
.....................................................UCAGUCCCACCAGuUCACCAAU.................... len:22 al:9
.....................................................UgAGUCCCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCuGCUCACCA...................... len:20 al:1
.....................................................UCAGUCCuACCAGCUCACC....................... len:19 al:1
.....................................................UCAGUCCCACCAGCUCACCuAU.................... len:22 al:31
.....................................................UCAGUCCuACCAGCUCACCAA..................... len:21 al:1
.....................................................UCuGUCCCACCAGCUCACCAAU.................... len:22 al:1
.....................................................UCAGUCCCACCAGCUCACCc...................... len:20 al:4
.....................................................UCAGUCCCgCCAGCUCACCAAUA................... len:23 al:1
.....................................................UCAGUCCuACCAGCUCACCAAU.................... len:22 al:2
......................................................CAGUCCCuCCAGCUCACCAAU.................... len:21 al:1
......................................................CAGUCCCACCAGCUCACCAAUA................... len:22 al:3
......................................................CAGUCCCACCAGCUCACCAA..................... len:20 al:2
......................................................CAGUCCCACCAGuUCACCAA..................... len:20 al:1
......................................................CAGUCCCACCAGCUCACCAAU.................... len:21 al:21
......................................................CAGcCCCACCAGCUCACCAAU.................... len:21 al:1
......................................................CAGUCCCACCAGCUCACC....................... len:18 al:3
......................................................CAGUCCCACCAcCUCACCAAU.................... len:21 al:1
......................................................CAGUCCCACCAGCUCACCA...................... len:19 al:1
......................................................CAGUCCCACCAGCUCACCAAUu................... len:22 al:5
......................................................CAGUCCCACCAGCUCACCAAc.................... len:21 al:11
......................................................uAGUCCCACCAGCUCACCAAU.................... len:21 al:1
......................................................CAGUCCCACCAGCUCACCAAg.................... len:21 al:1
.......................................................AGUCCCACCAGCUCACCAAUA................... len:21 al:1
.......................................................AGUCCCACCAGCUCACCAAc.................... len:20 al:4
.......................................................AGUCCCACCAGCUCACCAAU.................... len:20 al:9
.......................................................AGUCCCACCAGCUCACCAAUu................... len:21 al:3
.......................................................AGUCCCACCAGCUCACCAA..................... len:19 al:3
........................................................GUCCCACCAGCUCACCAAUg................... len:20 al:1
.........................................................UCCCACCAGCUCACCAAUg................... len:19 al:1
.........................................................UaCCACCAGCUCACCAAUA................... len:19 al:1