Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000014:9365459-9365552 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_4118.ps.pdf
Locus Name: Cluster_4118
GUUGGAUUUCCAGAAGUCAUAGCAUUGUUACUUAUUUGGAAGAUUUGUGUUCCAGAUUUGUAUCAUUGUUAUGACUUAUGGAGCAAAUCCUGAC
...(((((((((.(((((((((((.((.(((..((((((((........))))))))..))).)).))))))))))).))))...))))).... (-38.50)
....................AGCAUUGUUACUUAUUUGGAAGAUUUGU.............................................. len:28 al:1
....................AGCAUUGUUACUUAUUUGGAAG.................................................... len:22 al:4
....................AGCAUUGUUACcUAUUUGGA...................................................... len:20 al:2
....................AGCAUUGUUACUUAUUUGGg...................................................... len:20 al:1
....................AGCAUUGUUACUUAUUcGGAAGA................................................... len:23 al:1
....................AGCAUUGUUACUUAUUUGGc...................................................... len:20 al:3
....................AGCAUUGUUACUUAUUUGGAAGA................................................... len:23 al:53
....................AGCAUUGUUACUUAUUUGGAAGAUUa................................................ len:26 al:1
....................AGCAUUGUUACUUAUUUGGu...................................................... len:20 al:2
....................AGCAUUGUUACUUAUUUGGA...................................................... len:20 al:40
....................AaCAUUGUUACUUAUUUGGAAGA................................................... len:23 al:1
....................AGCAUUGUUACUUAUUUGu....................................................... len:19 al:1
....................AGCAUUGUUACUUAUUUGGAAGg................................................... len:23 al:2
.....................GCAUUGUUACUUAUUUGGAAGA................................................... len:22 al:16
.....................GCAUUGUUACUUAUUUGGAAGu................................................... len:22 al:1
.....................GCAUUGUUACUUAUUUGGA...................................................... len:19 al:9
.....................GCAUUGUUACUUAUUUGGAgGA................................................... len:22 al:1
.....................GCAUUGUUACUUAUUUGGg...................................................... len:19 al:2
.....................GCAUUGUUACUUAUUUGGAAG.................................................... len:21 al:1
.....................GCAUcGUUACUUAUUUGGA...................................................... len:19 al:1
................................UAUUUGGAAGAUUUGUGUUCa......................................... len:21 al:2
...........................................UUUGUGUUCCAGAUUUGUAUCAUUGUUAU...................... len:29 al:7
...........................................UUUGUGUUCCAGAUUUGUAUCAUUGUUA....................... len:28 al:1
...........................................UUUGUGUUaCAGAUUUGU................................. len:18 al:1
...........................................UUUGUGUUCCAGAUUUGUAUCAUUGUUAc...................... len:29 al:1
................................................aUUCCAGAUUUGUAUCAUUGUUAU...................... len:24 al:1
.................................................UUCCAGAUaUGUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUAc...................... len:23 al:1452
.................................................UUCCAGAUUUGUAUCAUUGUUcU...................... len:23 al:3
.................................................UUCCAGAUUUGUAgCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGgUUUGUAUCAUUGUUAU...................... len:23 al:16
.................................................UUCCAGAUUUGUAUCAUcGUUAU...................... len:23 al:12
.................................................UUCCAGAUgUGUAUCAUUGUUAU...................... len:23 al:3
.................................................UUCCAGAUUUaUAUCAUUGUUAU...................... len:23 al:1
.................................................UcCCAGAUUUGUAUCAUUGUUAU...................... len:23 al:34
.................................................UUCCAGAUUUGUAUCAUUGUUAg...................... len:23 al:153
.................................................UUCCAGAUUUGUuUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUaAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUAUu..................... len:24 al:252
.................................................UUCCAGAUUUGUAUCAUgGUUAU...................... len:23 al:3
.................................................UUCCAGAUUUGUAUCgUUGUUAU...................... len:23 al:19
.................................................UUCCAGAUUUGUAaCAUUGUUAU...................... len:23 al:5
.................................................UUCCAGAUUUGUAUCAUUGUc........................ len:21 al:26
.................................................UUCCAGAUUUGUAUCAUUGgU........................ len:21 al:3
.................................................UUCCAGAUUUGUAUCAUUGcU........................ len:21 al:2
.................................................cUCCAGAUUUGUAUCAUUGUUAU...................... len:23 al:94
.................................................UUuCAGAUUUGUAUCAUUGUUAU...................... len:23 al:4
.................................................UUCCAGAUUUaUAUCAUUGU......................... len:20 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUAUc..................... len:24 al:55
.................................................gUCCAGAUUUGUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGaU........................ len:21 al:1
.................................................UUaCAGAUUUGUAUCAUUGUUAU...................... len:23 al:4
.................................................UUCCAGAUUUGUAUCAUUGcUAU...................... len:23 al:98
.................................................UUCCAGAUUUGUAUCAUUGU......................... len:20 al:12
.................................................UUCCAGAUUUGUAUCAUUGUUAUGu.................... len:25 al:1
.................................................UUCCgGAUUUGUAUCAUUGUUAU...................... len:23 al:30
.................................................UUCCAGuUUUGUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUaGUAUCAUUGUUAU...................... len:23 al:2
.................................................UUCCAGAUUUGUAUCAUUGUUAUa..................... len:24 al:89
.................................................UUCCAGAUUUGUAUCAUUGUUgU...................... len:23 al:185
.................................................UUCCAGAUUUGaAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUcUCAUUGUUAU...................... len:23 al:2
.................................................UUCCAGAUUUGUAUCAUUGUUuU...................... len:23 al:11
.................................................UUCCAGAUUUGUAUCAUUa.......................... len:19 al:1
.................................................UUCCAGAUUUGUAUCAUUGgUAU...................... len:23 al:2
.................................................UUCCAaAUUUGUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUAUuA.................... len:25 al:2
.................................................UUCCAGAUUgGUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUcUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCcGAUUUGUAUCAUUGUUAU...................... len:23 al:2
.................................................UUCCAGAUcUGUAUCAUUGUUAU...................... len:23 al:18
.................................................UUCCAGAUUUGUAUCAUUGUUAUG..................... len:24 al:3
.................................................UUCCAGAUUUGUAUCAUUGc......................... len:20 al:5
.................................................UUCCAGAUUUGUAUCAUUGUUc....................... len:22 al:3
.................................................UUCuAGAUUUGUAUCAUUGUUAU...................... len:23 al:4
.................................................UUCCAGAUUUGUAUCAUUGUUAUaA.................... len:25 al:1
.................................................UUCCAGAUUUGUgUCAUUGUUAU...................... len:23 al:15
.................................................UUCCuGAUUUGUAUCAUUGUUAU...................... len:23 al:5
.................................................UUCCAGAUUUGUAUCAUaGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUA....................... len:22 al:16
.................................................UUCCAGAUUUGUAUaAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUg........................ len:21 al:6
.................................................UUCCAGAUUUGUAcCAUUGUUAU...................... len:23 al:24
.................................................UUCCAGAUUUGUAUCcUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAcUGUUAU...................... len:23 al:14
.................................................UUCCAGAUUUGUAUCAUUGUUAaG..................... len:24 al:1
.................................................UUCCAGAUUUGUAUCAUUaUUAU...................... len:23 al:2
.................................................UUCCAGAUUUGUAUgAUUGUUAU...................... len:23 al:2
.................................................UUCCAGAUUUGUAUCAUUcUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUAa...................... len:23 al:220
.................................................UUCCAGAUUUGcAUCAUUGUUAU...................... len:23 al:13
.................................................UUCCAGAUUUGUAUCAUUGUcAU...................... len:23 al:16
.................................................UaCCAGAUUUGUAUCAUUGUUAU...................... len:23 al:4
.................................................UUCCAGAUUUGUAUCAUUGUcA....................... len:22 al:2
.................................................cUCCAGAUUUGUAUCAUUGUU........................ len:21 al:3
.................................................UUCCAGAUUUGUAUuAUUGUUAU...................... len:23 al:30
.................................................UUCCAGAaUUGUAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUUAU...................... len:23 al:7555
.................................................UUCCAGAcUUGUAUCAUUGUUAU...................... len:23 al:20
.................................................UUCCAGAUUUGUAUCAUUGg......................... len:20 al:1
.................................................UUCCAGAUUUGUAUCAUUGUa........................ len:21 al:4
.................................................aUCCAGAUUUGUAUCAUUGUUAU...................... len:23 al:21
.................................................UUCCAGAUUcGUAUCAUUGUUAU...................... len:23 al:21
.................................................UUCCAGAUUUGgAUCAUUGUUAU...................... len:23 al:1
.................................................UUCCAGAUUUGUAUCAUUGUU........................ len:21 al:94
.................................................UUCCAGAUUUGUAUCAUUGUUu....................... len:22 al:4
..................................................UCCgGAUUUGUAUCAUUGUUAU...................... len:22 al:1
..................................................UCCAuAUUUGUAUCAUUGUUAU...................... len:22 al:1
..................................................UCCAGAUUUGUAUCAUUGUUAc...................... len:22 al:31
..................................................UCCAGAUUUGUAUCAUUGUUAUa..................... len:23 al:2
..................................................UCCAGAUUUGUAUCAUUGUUAUc..................... len:23 al:1
..................................................UCCAGAUUUGUAUCAUUGUUAg...................... len:22 al:2
..................................................UCCAGAUUUuUAUCAUUGUUAU...................... len:22 al:1
..................................................UCCAGAUUUGUAUCAUUGUUAUu..................... len:23 al:11
..................................................UCCAGAUUUGUAUCAUUGUUAa...................... len:22 al:6
..................................................UCaAGAUUUGUAUCAUUGUUAU...................... len:22 al:1
..................................................UCCAGAUUcGUAUCAUUGUUAU...................... len:22 al:1
..................................................UCCAGAUUUGUAcCAUUGUUAU...................... len:22 al:1
..................................................UCCAGAUUUGUAUCAUUGUUgU...................... len:22 al:3
..................................................UCCAGAUUUGUAUCAUUGUUAU...................... len:22 al:142
..................................................UuCAGAUUUGUAUCAUUGUUAU...................... len:22 al:2
..................................................UCCAGAUUUGUAUCgUUGUU........................ len:20 al:1
..................................................cCCAGAUUUGUAUCAUUGUUAU...................... len:22 al:1
....................................................CAGAUUUGUAUCAUUGUUAU...................... len:20 al:1
.............................................................AUCAUUGUUAUGACUUAUGGA............ len:21 al:1
................................................................AUUGUUAUGACUUAUGGAGaA......... len:21 al:1