Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000014:2594743-2594833 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_4040.ps.pdf
Locus Name: Cluster_4040
GCUUUCUGUCAUUGUUGUACUGAAACAUUAACACGCCAAUGAUGUUAUCCGUGGUGCGUUAUUGUUUCGGUGUAACUAUGUCAUCAACCAA
......((.(((.((((((((((((((.((((.(((((..(((...)))..))))).)))).)))))))))))))).))).))........ (-31.40)
....................UaAAACAUUAACACGCCAAUGA................................................. len:22 al:1
....................UGAAACAUUAACACGCCAAUa.................................................. len:21 al:2
....................UGAAACAUUAACACGCCAAUG.................................................. len:21 al:9
....................UGAAACAUUAACACGCuAAUGAU................................................ len:23 al:1
....................UGAAACAUUAACACGCCAAUGAUa............................................... len:24 al:6
....................cGAAACAUUAACACGCCAAUGAU................................................ len:23 al:2
....................UGAAACAUUAACACGCCAAUGAa................................................ len:23 al:2
....................UGAAACAUUAACACGCCAAUGA................................................. len:22 al:36
....................UGAAACAUUAACACGCCAAUGAUG............................................... len:24 al:1
....................UGAAACAUUAACACGaC...................................................... len:17 al:1
....................UGAAACAUUAACACGCCA..................................................... len:18 al:9
....................UGAAACAUUAgCACGCCAAUG.................................................. len:21 al:1
....................UGAAACAUUAACACGCCAAUGAUu............................................... len:24 al:24
....................UGAAACAUUAACACGCCAAUGg................................................. len:22 al:3
....................UGAAACAUUAACACGCCAAUGAU................................................ len:23 al:35
....................UGAgACAUUAACACGCCAAUGA................................................. len:22 al:1
....................UGAAACAUUAACACGCuA..................................................... len:18 al:1
....................UGAAACAUUAACACGCCAAU................................................... len:20 al:1
....................UGAAACAUUAACACGCCAAgG.................................................. len:21 al:2
....................UGAAACAUUAACACGCCAAUGAg................................................ len:23 al:2
....................UGAAACAUUAACACGCCAAUGAcG............................................... len:24 al:1
....................UGAAACAUUAACACGCCAAUGAUc............................................... len:24 al:4
....................UGAAACAUUAACACGCCAAUGgU................................................ len:23 al:2
....................UGAAACAUUAACACGCCAAc................................................... len:20 al:1
....................UGAAACAUUAACACGCCAAUGAc................................................ len:23 al:2
....................UGAAACAUUAACACGCCAAcG.................................................. len:21 al:1
.................................................CGUGGUGCGUUAUUGUUUCGGUc................... len:23 al:1
.................................................CGUGGUGCGUUAUUGUUUCGGU.................... len:22 al:54
.................................................CGUGGUGCGUUAUUGUUUCaG..................... len:21 al:1
.................................................CGUGGcGCGUUAUUGUUUCG...................... len:20 al:2
.................................................CGUGGUGCGUUAUaGUUUCGGU.................... len:22 al:1
.................................................CGUGGcGCGUUAUUGUUUC....................... len:19 al:39
.................................................CGUGGUGCGUUAUUGUUUCa...................... len:20 al:1
.................................................CGUGGUGCGUUAUUGUUUCGGUa................... len:23 al:1
.................................................CGUGGcGCGUUAUUGUUUCGGUG................... len:23 al:1
.................................................CGUGGcGCGUUAUUGUUUCGGU.................... len:22 al:52
.................................................CGUGGUGCGUUAUUGUUUCGu..................... len:21 al:1
.................................................CGUGGUGCGUUAUUGUUUCGGc.................... len:22 al:14
.................................................CGUGGUGCGUUAUUGUUUCGGa.................... len:22 al:5
......................................................UGCGUUAUUGUUUCGGUGUu................. len:20 al:1
......................................................cGCGUUAUUGUUUCGGUGUA................. len:20 al:1
......................................................UGCGUUAUUGUUUCGGUGUA................. len:20 al:1
.......................................................................GUAACUAUGUCAUCAACCAA len:20 al:1