Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000014:2366038-2366132 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_4039.ps.pdf
Locus Name: Cluster_4039
UGGCUCAUGGCUGUAUGCUUAACUUUCGCAGGUUAAAAACUCCUUUAGUGAAUUUUUAGCCCGCGGAAGUUGCGUAAACAGUUCUUCUCUGUACA
........((((((.(((.((((((((((.(((((((((.(((....).)).))))))))).)))))))))).))).))))))............ (-31.90)
..GCUCAUGGCUGUAUGCUU........................................................................... len:18 al:1
....................AACUUUCGCAGGUUAAAAACUCC.................................................... len:23 al:9
....................AACUUUCGCAGGUUAAAAACUCCa................................................... len:24 al:2
....................AACUUUCGCAGGUUAAAAACUC..................................................... len:22 al:1
......................CUUUCGCAGGUUAAAAACU...................................................... len:19 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUG....................... len:22 al:2
..................................................AAUUUUUAGCCCGCGGAgGUUG....................... len:22 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUGu...................... len:23 al:1
..................................................AAUUUUUgGCCCGCGGAAGUUGC...................... len:23 al:2
..................................................AAUUUUUAGCCCGCGGAAGUUGa...................... len:23 al:2
..................................................AAUUUUUAGCCCGCGGAAGUUGCG..................... len:24 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUGCu..................... len:24 al:3
..................................................AAUUUUUAGCCCGCGGAAGUUGCc..................... len:24 al:1
..................................................AAUUUUUAGCCCGCGGAAGUUGCa..................... len:24 al:2
..................................................AAUUUUUAGCCCGCGGAAGUUGC...................... len:23 al:15
...................................................AUUcUUAGCCCGCGGAAGUUG....................... len:21 al:3
...................................................AUUUUUAGCCCGCGGAAGcUGC...................... len:22 al:3
...................................................AUUUUUAGCCCGuGGAAGUUGC...................... len:22 al:2
...................................................AUUUUUAGCCCGCGGAAGUU........................ len:20 al:20
...................................................AUUUUaAGCCCGCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGu...................... len:22 al:155
...................................................AUUUUUAGCCCGCGGAAGc......................... len:19 al:3
...................................................AUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:641
...................................................AUUUUUAGCCCGCGGAAGUUGCa..................... len:23 al:103
...................................................AUUUUUAGCCCGCGGAAGUa........................ len:20 al:2
...................................................AUUUUUAGuCCGCGGAAGUUGC...................... len:22 al:1
...................................................cUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGCaU.................... len:24 al:1
...................................................AUUUUUAGCCCGCGGAAGUcGC...................... len:22 al:3
...................................................AUUUUUAGCCCGCGGAAGgU........................ len:20 al:2
...................................................AUUUUUAGCCCGCGGAAGUgG....................... len:21 al:5
...................................................AUUUUUAGCCCGCGGAAGUUa....................... len:21 al:25
...................................................AUUUUcAGCCCGCGGAAGUUGC...................... len:22 al:5
...................................................AUUUUUAGCCCGCaGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGCaUA................... len:25 al:1
...................................................AUUUUUAGCCCGCGaAAGUUGC...................... len:22 al:3
...................................................gUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
...................................................AcUUUUAGCCCGCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUu....................... len:21 al:1
...................................................cUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:8
...................................................AUUUUUAGCCCGCGGAAGUUGg...................... len:22 al:8
...................................................AUUUUUAGCCCGCGGAAaUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGA............................ len:16 al:2
...................................................AUUUUUAGCCCGCGGAAG.......................... len:18 al:1
...................................................AUUUUUAGCCCGCGGAAGUc........................ len:20 al:6
...................................................AUUUUUAGCCCGCGGAAGUUG....................... len:21 al:57
...................................................AUUUUUAGCCCGCGGAAGUcG....................... len:21 al:3
...................................................gUUUUUAGCCCGCGGAAGUUG....................... len:21 al:1
...................................................uUUUUUAGCCCGCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGCu..................... len:23 al:94
...................................................AUUUUUgGCCCGCGGAAGUUGC...................... len:22 al:1
...................................................AUUUUUAGCCCGCGGAAGUUGCc..................... len:23 al:29
...................................................AUUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:43
...................................................AUUcUUAGCCCGCGGAAGUUGC...................... len:22 al:2
...................................................AcUUUUAGCCCGCGGAAGUUGCG..................... len:23 al:1
...................................................AUUUUUAGCCCGCGGAgGUUGC...................... len:22 al:4
...................................................AUUUUUAGCCCGCGGAAGUUGa...................... len:22 al:65
...................................................AUUUUUAGCCCGCGGAAGU......................... len:19 al:10
...................................................AUUUUUAGCCCGCGGAAGUUaC...................... len:22 al:19
....................................................UUUUUAGCCCGCGGAAGUUGCu..................... len:22 al:1
.....................................................UUUUAGCCCGCGGAAGUUa....................... len:19 al:1
.....................................................UUUUAGCCCGCGGAAGUUGCu..................... len:21 al:1
.....................................................UUUUAGCCCGCGGAAGUUGC...................... len:20 al:2
.....................................................UUUUAGCCCGCGGAAGUUGu...................... len:20 al:1
......................................................UUUAGCCCGCGGAAGUUGC...................... len:19 al:1
........................................................UAGCCCGCGGAAGUUGCa..................... len:18 al:1