Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000001:1459402-1459496 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_390.ps.pdf
Locus Name: Cluster_390
UUGACUUUGUUUGGUUUUUACCUGCCUCUUGUUCUUCUUCCAUAUUCAUCUUGAAAGAAGUGCAAGUGGUAGAGAAAUACCAAACUGAAAUGCAU
........(((((((.(((..(((((.(((((.((((((.((.........)).)))))).))))).)))))..))).))))))).......... (-32.20)
....................CCUGCCUCUUGUUCUUCUUCCA..................................................... len:22 al:1
....................CCUGCCUCUUGUUCUcCUUCCA..................................................... len:22 al:2
....................CCUGCCUCUUGUUCUUCUUCC...................................................... len:21 al:1
....................CCUGCCUCUUGUUCUUCUUCCg..................................................... len:22 al:1
......................UGCCUCUUGUUCUUCUUCu...................................................... len:19 al:1
......................UGCCUCUUGUUCUUCUUCCA..................................................... len:20 al:3
...........................CUUGUUCUUCUUCCAUAUUCAUCUU........................................... len:25 al:1
.................................................CUUGAAAGAAGUGCAAGUGGUAGAGA.................... len:26 al:2
..................................................UUGAAAGAAGUGCAAGUGGUAGA...................... len:23 al:6
..................................................UUGAAAGAAGUGCAAGUGGUAGAG..................... len:24 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAG..................... len:23 al:12
...................................................UGAAAGAAGUGCAAGUGGUAGAa..................... len:23 al:1
...................................................UGAAAGAAGUGCAAGUGGUAG....................... len:21 al:4
...................................................UGAAAGAAGUGCAAGUGGc......................... len:19 al:2
...................................................UGAAAGAAGUGCAAGUGGUAGAGu.................... len:24 al:2
...................................................UGAAAGAAGUGCAAGUGGUA........................ len:20 al:1
...................................................UGAAAGAAGUGCAAGUGGUAa....................... len:21 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGAGA.................... len:24 al:1
...................................................UcAAAGAAGUGCAAGUGGUAGAGA.................... len:24 al:1
...................................................UGAAAGAAGUGCAAGUGGUAGA...................... len:22 al:35
...................................................UGAAAGAAGUGCAAGUGGUAGc...................... len:22 al:2
...................................................UGAAAGAAGUGCAAGUGGU......................... len:19 al:6
....................................................cAAAGAAGUGCAAGUGGUAG....................... len:20 al:2
....................................................cAAAGAAGUGCAAGUGGUAGAGA.................... len:23 al:5
.....................................................AAAGAAGUGCAAGUGGUAGAGc.................... len:22 al:62
.....................................................AAAGAAGUGCAAGUGGcAGAG..................... len:21 al:1
.....................................................AAAGgAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGaGGUAGAGA.................... len:22 al:1
.....................................................AgAGAAGUGCAAGUGGU......................... len:17 al:1
.....................................................AAAGAAGUGCAuGUGGUAGAGA.................... len:22 al:1
.....................................................AcAGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAuA.................. len:24 al:3
.....................................................AAAGAAGUaCAAGUGGUAGAG..................... len:21 al:30
.....................................................AAAGAAGUGCAcGUGGUAGA...................... len:20 al:1
.....................................................AAAGAAGUGCAAGUGGUAGuGA.................... len:22 al:1
.....................................................cAAGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGgG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAA................... len:23 al:12
.....................................................AAgGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AcAGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAAGAgGUGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAa..................... len:21 al:51
.....................................................AAAGAAGcGCAAGUGGUAGAGA.................... len:22 al:6
.....................................................AAAGAAGUGCAAGUGGUA........................ len:18 al:14
.....................................................cAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:17
.....................................................AAAGAAGUGCAAGUGGaAG....................... len:19 al:3
.....................................................gAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:12
.....................................................AAAGAAGUGCAAGUGGUAGAcA.................... len:22 al:4
.....................................................AAAGAAGUGCAAGUGGUAGgGAA................... len:23 al:1
.....................................................AAAGAAGUGCAAGUGGUAc....................... len:19 al:15
.....................................................AAAaAAGUGCAAGUGGUAGAG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAc..................... len:21 al:8
.....................................................AAAGAAGUcCAAGUGGUAGA...................... len:20 al:1
.....................................................AAcGAAGUGCAAGUGGUAGAGA.................... len:22 al:31
.....................................................AAAGAAGUGCAAGUGGUAa....................... len:19 al:60
.....................................................AAAGAAGaGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGA...................... len:20 al:43
.....................................................AAAGAAGUGCAAGgGGUAGAGA.................... len:22 al:1
.....................................................uAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGAu................... len:23 al:14
.....................................................AAAGAAGUGCcAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUcG....................... len:19 al:5
.....................................................AAAGAAGUGCAgGUGGUAGAGA.................... len:22 al:3
.....................................................AAAGAAGcGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGUGGgA........................ len:18 al:1
.....................................................AAAGAAGUGCAcGUGGUAG....................... len:19 al:1
.....................................................uAAGAAGUGCAAGUGGUAGAG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGUGGUgGAGA.................... len:22 al:7
.....................................................AAAGAAGUGCAAGUGGUAGAGu.................... len:22 al:275
.....................................................AAAGAAGUGCAAGUGGUAGAGg.................... len:22 al:63
.....................................................AAAGAAGUGCgAGUGGUAGAGA.................... len:22 al:12
.....................................................AAAGAAGUGCAAGcGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAu..................... len:21 al:5
.....................................................AAAGAAGUGCgAGUGGUAGAGAA................... len:23 al:1
.....................................................AAAGAAGUGCAAGUGGcAGAGA.................... len:22 al:2
.....................................................gAAGAAGUGCAAGUGGUAGA...................... len:20 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAG..................... len:21 al:224
.....................................................AAAGAAGUGCAAGUGGcAG....................... len:19 al:5
.....................................................AAAGAAGUGCAAGUGGUAGAaA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUgG....................... len:19 al:1
.....................................................AAAGAAGUGCAAGUGGU......................... len:17 al:3
.....................................................AAAGgAGUGCAAGUGGUAG....................... len:19 al:1
.....................................................AAAGAAGUGuAAGUGGUAGAGA.................... len:22 al:4
.....................................................AAAGAAGUGCAAGUGGUAGAGAg................... len:23 al:1
.....................................................AAAGAAGUGCAAGUaGUAGAGA.................... len:22 al:1
.....................................................AgAGAAGUGCAAGUGGUAGAGA.................... len:22 al:6
.....................................................AAAGAAGUGCuAGUGGUAGAGA.................... len:22 al:1
.....................................................AgAGAAGUGCAAGUGGUAGAG..................... len:21 al:2
.....................................................AAAGAAGUGCAAGcGGUAGAGA.................... len:22 al:2
.....................................................AAAGuAGUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAc................... len:23 al:2
.....................................................AgAGAAGUGCAAGUGGUA........................ len:18 al:1
.....................................................AAAGAAGUGCgAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGAAu.................. len:24 al:2
.....................................................AcAGAAGUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGGUAaAGA.................... len:22 al:1
.....................................................uAAGAAGUGCAAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCAAGUGGUAGAGAAA.................. len:24 al:1
.....................................................AAAGAAGUGCAAGUGGUAGAGA.................... len:22 al:1704
.....................................................AAAGAAGUGCAAGUGGUuGAGA.................... len:22 al:1
.....................................................AAAGAAGUGCAAGUGcUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUuCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAAGAAGUGCAAGUGGUAu....................... len:19 al:13
.....................................................AAgGAAGUGCAAGUGGUAGAGA.................... len:22 al:16
.....................................................AAcGAAGUGCAAGUGGUAG....................... len:19 al:15
.....................................................AAAGAAGUaCAAGUGGUAGA...................... len:20 al:76
.....................................................AAAGAAGUGCgAGUGGUAG....................... len:19 al:2
.....................................................AAAGAAGUGCAAGUGGUAG....................... len:19 al:335
.....................................................AAcGAAGUGCAAGUGGUAGAG..................... len:21 al:1
.....................................................AAuGAAGUGCAAGUGGUAGAGA.................... len:22 al:1
.....................................................AAAGAAGUuCAAGUGGUAGAGA.................... len:22 al:1
.....................................................gAAGAAGUGCAAGUGGUAG....................... len:19 al:4
.....................................................AAAGAAGUGCAAGUGGcAGAGAA................... len:23 al:1
.....................................................AAAGAgGUGCAAGUGGUAGAGA.................... len:22 al:5
......................................................AAGAAGUGCAAGUGGUAGAGA.................... len:21 al:3
.......................................................AGAAGUGCAAGUGGUAGAa..................... len:19 al:1
........................................................GAAGUGCAAGUGGUAGAGA.................... len:19 al:1
.........................................................AAGUGCAAGUGGUAGAGA.................... len:18 al:1