Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000012:6455183-6455276 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_3661.ps.pdf
Locus Name: Cluster_3661
UCUCCGUUUCUUAGGUGAGCGGUGAAAUACUCUGACGGAGUCAGCUUCAGUGCACUCCAUCAGAAUAUUUUGCGCUCGCUUAAAGAUUGAUCAG
..((.((((.(((((((((((.(((((((.(((((.(((((..((......))))))).))))).)))))))))))))))))))))).)).... (-37.60)
......................UGAAAUACUCUGACG......................................................... len:15 al:1
......................UGAuAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAgUACUCUGACGGAGUC.................................................... len:20 al:4
......................UGAAAUACUuUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAGUCAGuU................................................ len:24 al:4
......................cGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:9
......................UGAAAUACUCUGACGGAGcCAGC................................................. len:23 al:2
......................UGAAgUACUCUGACGGAGUCAGCU................................................ len:24 al:2
......................UGAAAUACUCUGACGGAGUCAGCUUu.............................................. len:26 al:5
......................UGgAAUACUCUGACGGAGUC.................................................... len:20 al:2
......................UGAAAUACUCUGACGGAGUCA................................................... len:21 al:4
......................UuAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGUCAG.................................................. len:22 al:133
......................UGAAAUACUCUGACGGAaUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGCUa............................................... len:25 al:9
......................UGAAAUACUCUGACGGAGUCAGa................................................. len:23 al:81
......................aGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACGGAGUCAGu................................................. len:23 al:128
......................UGAAAUACUCUGACGGAGUCAGCUUCAGUGu......................................... len:31 al:4
......................UGAAAUACUCUGACGGAGUCAaC................................................. len:23 al:31
......................UGAAAUACUuUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAGUCAGCaU............................................... len:25 al:2
......................UGAAAUACUCUGACGGAGUCAGCUUCAGUG.......................................... len:30 al:1
......................UGAAAUACUCUGACGGAGUCAGCUg............................................... len:25 al:1
......................UGAAgUACUCUGACGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACcCUGACGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACGGAu...................................................... len:18 al:4
......................UGuAAUACUCUGACGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAGUa.................................................... len:20 al:25
......................UGAAAUACUCUGAuGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCaGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGgCGGAGUCAG.................................................. len:22 al:1
......................UGAAAUACUCUGACGGAGUCAGC................................................. len:23 al:1099
......................UGAAAUACUCUGACGGAGUu.................................................... len:20 al:7
......................UGAAAUACUCUGACGaAGUCAGC................................................. len:23 al:4
......................aGAAAUACUCUGACGGAGUC.................................................... len:20 al:3
......................UaAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGgGUCAGC................................................. len:23 al:7
......................UGAAAUACUCUGACGGAGaCAGC................................................. len:23 al:2
......................UGAAAUACUCcGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACaGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCAa.................................................. len:22 al:24
......................UGAAAUACUCUGACGGAGUCgGC................................................. len:23 al:4
......................UGAAAUACUCUGACGGAGUCAc.................................................. len:22 al:8
......................UGAAAUACUCUGACGG........................................................ len:16 al:1
......................UGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:122
......................UGgAAUACUCUGACGGAGUCAGC................................................. len:23 al:8
......................UGAAAUACUCcGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGg................................................. len:23 al:3
......................UGAAAUACcCUGACGGAGU..................................................... len:19 al:1
......................UGAAAUACUCUGACGGAGUCcG.................................................. len:22 al:2
......................UGAAAUACUCUGACGGAGU..................................................... len:19 al:44
......................UGAAAUACUCUGACGGAaU..................................................... len:19 al:1
......................UGAAAUACUCUGACGGAGUCgGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAGCc................................................ len:24 al:40
......................UGAAAUACUCUGACGGAGUCAGCUc............................................... len:25 al:1
......................UGAAAUACUCUGACGGAGgCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUC.................................................... len:20 al:171
......................UGAAAUACUCUGACGGuGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGc..................................................... len:19 al:10
......................cGAAAUACUCUGACGGAGUC.................................................... len:20 al:1
......................UGAAAUACUCUGgCGGAGUCAGC................................................. len:23 al:3
......................UGAAAUACUCUGACGGAGUCAGCUUC.............................................. len:26 al:2
......................UGAAAUACUCUGACGGAGcCAGCU................................................ len:24 al:1
......................UGAgAUACUCUGACGGAGU..................................................... len:19 al:2
......................UGAAAUAuUCUGACGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGgCGGAGUCAGCU................................................ len:24 al:1
......................UGAAAcACUCUGACGGAGUCAGC................................................. len:23 al:4
......................UGAAAUACUCUGACGGAGgC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAc...................................................... len:18 al:1
......................UGAAAUgCUCUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGgGUC.................................................... len:20 al:1
......................UGAAAUACUCUGACGGAa...................................................... len:18 al:1
......................UGAgAUACUCUGACGGAGUCAG.................................................. len:22 al:3
......................UGgAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGAGUCAu.................................................. len:22 al:3
......................UGAAAUACUCUGACGGAGaC.................................................... len:20 al:2
......................UGAAAUACUCUGACGGAGUCAGCUUCAGc........................................... len:29 al:1
......................UGAAAUACUCUGACGGcGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGACGGAGUCAGCa................................................ len:24 al:87
......................UGAAAUACUCUGACGGAGUCAGCg................................................ len:24 al:21
......................aGAAAUACUCUGACGGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCgGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUuUGACGGAGUCAGC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAGUCAGCUU............................................... len:25 al:39
......................UGAAAUACUCUGACGGAGg..................................................... len:19 al:5
......................UGAAAUACUCUGACGGAGUCAGCUUCAGU........................................... len:29 al:1
......................UGAAAUACUCUGACGGAGUCuGC................................................. len:23 al:1
......................UGAAAUACUCcGACGGAGUCAGC................................................. len:23 al:2
......................UGAAAUACUCUGgCGGAGUC.................................................... len:20 al:4
......................UGAAAUACUCUGACaGAGUCAGCU................................................ len:24 al:1
......................UGAAAUACUCUGACGGA....................................................... len:17 al:4
......................UGAgAUACUCUGACGGAGUCAGC................................................. len:23 al:5
......................UGAAAUACUCUGACGGAGa..................................................... len:19 al:3
......................UGAAAUACUCUGACGGAGUCAuC................................................. len:23 al:1
......................UGAAAUACUCUGACGGAG...................................................... len:18 al:5
......................UGAAAUACUCUGACGGAGUCAGaU................................................ len:24 al:1
.......................GAAAUACUCUGACGGAGUC.................................................... len:19 al:1
.......................GAAAUACUCUGACGGAGUCAGCU................................................ len:23 al:1
.......................GAAAUACUCUGACGGAGUCAG.................................................. len:21 al:3
............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:30 al:5
............................................CUUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:29 al:1
.............................................UUCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:28 al:7
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCa.................... len:29 al:10
.............................................UUCAGUGuACUCCAUCAGAAUAUUUUGCG.................... len:29 al:30
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:29 al:14
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCc.................... len:29 al:9
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGCG.................... len:29 al:3
.............................................UUCAGUGCACUCCAUCAGAAUAUUUUGC..................... len:28 al:2
..............................................UCAGUGuACUCCAUCAGAAUAUUUUGC..................... len:27 al:1
...............................................CAGUGCACUCCAUCAGAAUAUUUUGCu.................... len:27 al:1
................................................AGUGuACUCCAUCAGAAUAUUUUGC..................... len:25 al:2
..................................................UGuACUCCAUCAGAAUAUUUUGCG.................... len:24 al:1
..................................................UGuACUCCAUCAGAAUAUUUUGC..................... len:23 al:7
...................................................GCACUCCAUCAGAAUAUUUUGCu.................... len:23 al:1
...................................................GuACUCCAUCAGAAUAUUUUGCG.................... len:23 al:4
...................................................GaACUCCAUCAGAAUAUUUUGC..................... len:22 al:1
...................................................GCACUCCAUCAGAAUAUUUUGu..................... len:22 al:1
...................................................GCACUCCAUCAGAAUAUUUUGCc.................... len:23 al:1
...................................................GuACUCCAUCAGAAUAUUUUGC..................... len:22 al:8
....................................................uACUCCAUCAGAAUAUUUUGC..................... len:21 al:32
....................................................aACUCCAUCAGAAUAUUUUGC..................... len:21 al:2
....................................................aACUCCAUCAGAAUAUUUUGCG.................... len:22 al:3
....................................................CACUCCAUCAGAAUAUUUUGC..................... len:21 al:1
....................................................uACUCCAUCAGAAUAUUUUGCG.................... len:22 al:7