Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000000:2872019-2872110 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_36.ps.pdf
Locus Name: Cluster_36
CAUGGCUGCUCGGUGAGCGGUUAUAGUAUUGUCGACAGGUACUUGUUCAAGUACCUGACAACAAUACUACAACUGCUCACCGACAAAUCCAA
..(((.((.(((((((((((((.(((((((((.(.(((((((((....))))))))).).))))))))).)))))))))))))))...))). (-50.30)
.....................UAUAGUAUUGUCGACAGGUACa................................................. len:22 al:6
.....................UAUAGUAUUGUCGACAGGUACU................................................. len:22 al:20
.....................UgUAGUAUUGUCGACAGGUACUU................................................ len:23 al:1
.....................UAUAGUAUUGUCGACAGGU.................................................... len:19 al:1
.....................UAUAGUAUUGUCGACAGGUA................................................... len:20 al:1
.....................UAUAGUAUUGUCGACAGGUACg................................................. len:22 al:1
.....................UAUAGUAUUGUCGACAGGUACc................................................. len:22 al:3
......................AUAGUAUUGUCGACAGGUA................................................... len:19 al:4
......................AUAGUAUUGUCGACAGGUACg................................................. len:21 al:7
......................AUAGUAUUGUCGACAGGUACc................................................. len:21 al:19
......................AUAGUAUUGUCGACAGGUAC.................................................. len:20 al:1
......................AUAGUAUUGUCGACAGGU.................................................... len:18 al:4
......................AUAGUAUUGUCGACAGGUACUUu............................................... len:23 al:2
......................AUAGUAUUGUCGgCAGGUACU................................................. len:21 al:2
......................AUAGUAUUGUCGACAGGUACUU................................................ len:22 al:6
......................AUAGUAUUGUCGACAGGUACUa................................................ len:22 al:1
......................AUAGUAUUGUCGACAGGUAu.................................................. len:20 al:1
......................AUAGUAUUGUCGACAGGUACU................................................. len:21 al:63
......................AUAGUAUUGUCGACAGGUgCUU................................................ len:22 al:2
......................AUAGUAUUGUCGACAGGa.................................................... len:18 al:1
......................AUAGUAUUGUCGACAGGUgCU................................................. len:21 al:1
......................AUAGUAUUGUCGACAGGUACa................................................. len:21 al:18
......................AUAGUAUUGUCGACAGGUACUc................................................ len:22 al:1
.......................UAGUAUUGUCGACAGGUACUc................................................ len:21 al:1
.......................UAGUAUUGUCGACAGGUA................................................... len:18 al:1
..................................................GUACCUGACAACAAUACUACA..................... len:21 al:1
..................................................GUACCUGACAACAAUACUACAA.................... len:22 al:2
...................................................UACCUGACAACAAUACUACA..................... len:20 al:2
...................................................UACCUGACAACAAUACUACAA.................... len:21 al:4