Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000010:8012916-8013008 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_3392.ps.pdf
Locus Name: Cluster_3392
UAUGCAGUAAGUUUUGUGUUUUUACUUCAAUGUUAUCGGUUUGUUUAAAACGAACCGAUAACAUUGAAGUUAAAACACAAAACUUGUAAACAA
.......(((((((((((((((.((((((((((((((((((((((...)))))))))))))))))))))).)))))))))))))))....... (-49.00)
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....................cUUACUUCAAUGUUAUCGGUUUGU................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUUGc................................................. len:24 al:15
....................UUUACUUCAAUGUUAUCGGUUUGUU................................................ len:25 al:2
....................UUUACUUCAAUGUUAcCGGUUUGU................................................. len:24 al:1
....................UUUACUUCAAUGUUAUCGGUgUGU................................................. len:24 al:1
....................UUUACUUCAAUGUUAUCGaUUUGU................................................. len:24 al:11
....................UUUACUUCAAcGUUAUCGGUUUGU................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUa................................................... len:22 al:1
....................UUUACUUCAAUGUgAUCGGUUUGU................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUUGa................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUU................................................... len:22 al:5
....................UUUACUUCAAUGUUAUCGGUUUGg................................................. len:24 al:2
....................UUUACUUCAAUGUUAUCGGUUUGU................................................. len:24 al:60
.....................UUACUUCAAUGUUAUCGGUUgG.................................................. len:22 al:2
.....................UUACUaCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUAuUUCAAUGUUAUCGGUUUGU................................................. len:23 al:3
.....................UUACUUCAAUGUUAUCGGUUUa.................................................. len:22 al:8
.....................UUACUUCuAUGUUAUCGGUUUG.................................................. len:22 al:1
.....................UUACUUCAAUaUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGcUAUCGGUUU................................................... len:21 al:1
.....................UUACUUCAAUGcUAUCGGUUUGU................................................. len:23 al:19
.....................UUACUUCAAUGUUAUCGGUUUGUg................................................ len:24 al:34
.....................UUACUUCAAUGUUAUCGGUUUGUUU............................................... len:25 al:38
.....................UUACUUCAgUGUUAUCGGUUUGUU................................................ len:24 al:3
.....................UUACUUCAAUGUaAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCGGcUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCGGUUUGg................................................. len:23 al:598
.....................UcACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:7
.....................UUACUUCAAUGUUAUCGGUUUGcU................................................ len:24 al:4
.....................UUACUUCAAUGUUAUCGGUUUGUaUA.............................................. len:26 al:1
.....................UUACUUCAAUGUUAUCGG...................................................... len:18 al:1
.....................UUACUUCAgUGUUAUCGGUUUGUUU............................................... len:25 al:1
.....................UUACUUCAcUGUUAUCGGUUUGU................................................. len:23 al:1
.....................UcACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCGGUc.................................................... len:20 al:1
.....................UUACUUCAAUGUcAUCGGUUUGU................................................. len:23 al:11
.....................UUACaUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCaGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGcUAUCGGUUUGUU................................................ len:24 al:3
.....................UUACUUCAAUGUUAUCGGUUcGU................................................. len:23 al:4
.....................cUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:60
.....................UUACUUCAAUGUUAUCGGUUgGU................................................. len:23 al:5
.....................UUACUUCAAUGUUAUCGGgUUGUU................................................ len:24 al:2
.....................UUACUUCAAUGUUAUCGGUgUG.................................................. len:22 al:2
.....................UUACUUCAAUGUUAUCGGUcUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGcUUUGU................................................. len:23 al:1
.....................UaACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:8
.....................UgACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCGGU..................................................... len:19 al:3
.....................UUACUUCAAUGUUAUCGaUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAUCGGUUUGUgU............................................... len:25 al:1
.....................UUACUUCAAUGUUAgCGGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUUUcU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUUU................................................... len:21 al:20
.....................UUACcUCAAUGUUAUCGGUUUGUU................................................ len:24 al:3
.....................UUACUUCAAcGUUAUCGGUUUGU................................................. len:23 al:11
.....................UUACUUCAAUGUUAUCGuUUUGU................................................. len:23 al:1
.....................UUACgUCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUcCAAUGUUAUCGGUUUGUU................................................ len:24 al:5
.....................UUACUUCAAUGUUAUCuGUUUGU................................................. len:23 al:6
.....................UUACUUCAAUGUUAUCGGUUc................................................... len:21 al:3
.....................UUACUUCAAUGgUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUUgUCGGUUUGUU................................................ len:24 al:4
.....................UUACUUCgAUGUUAUCGGUUUGU................................................. len:23 al:30
.....................UUACUUCAAUGUUAUCGGUUa................................................... len:21 al:7
.....................UUACUUCAAUGUUgUCGGUUUGU................................................. len:23 al:23
.....................UUACUUCAAUGUUAUCGGUUUGgU................................................ len:24 al:7
.....................UUACUUCAgUGUUAUCGGUUUGU................................................. len:23 al:22
.....................UUACUUCAAUGUUAUCGGUUUG.................................................. len:22 al:43
.....................UUACUUCAAUGUUAUCGGUUUuU................................................. len:23 al:2
.....................UUACUUCAAUGUUAUCGGUUcGUU................................................ len:24 al:2
.....................UUACUUCAAUGUUAUCGGUUUGaU................................................ len:24 al:2
.....................UUcCUUCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUUAUCGGc..................................................... len:19 al:4
.....................UUACUUCAAUGUUAUCGGUUUGUUc............................................... len:25 al:3
.....................UUACUUCAAUGaUAUCGGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUcUGU................................................. len:23 al:69
.....................UUACUUCAAUGUUAUCGGUUUGc................................................. len:23 al:1735
.....................cUACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:7
.....................UUACUUCAAUGUUAUCGGg..................................................... len:19 al:2
.....................UUgCUUCAAUGUUAUCGGUUUGU................................................. len:23 al:21
.....................UUACUUCAAUGUUAUCGGUUUGUa................................................ len:24 al:102
.....................UUACUUuAAUGUUAUCGGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:6806
.....................UUACUUCAAUGUUAUCGGUUUGUUa............................................... len:25 al:60
.....................UUACUUCgAUGUUAUCGGUUUGUU................................................ len:24 al:5
.....................UUACUUCAAUGUUAcCGGUUUGU................................................. len:23 al:19
.....................UUACUUCAAUGUUAUCGGUUUGUUg............................................... len:25 al:1
.....................UUACUUCAAUGUUAUaGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUUAUCGGUU.................................................... len:20 al:16
.....................UUACUUCAAUGUUAUCGGUg.................................................... len:20 al:1
.....................UUACUUCAAUGUUAUCGGUUUaU................................................. len:23 al:40
.....................UUACUUCAAUGUUAUCGGcUU................................................... len:21 al:1
.....................UUACUgCAAUGUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUaUUAUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUaAUCGGUUUGU................................................. len:23 al:2
.....................UUgCUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:3
.....................UUACUUCAAUGUcAUCGGUUUGUU................................................ len:24 al:2
.....................UUACUUCAAUGUUAUCGGUgUGU................................................. len:23 al:5
.....................UUACUUuAAUGUUAUCGGUUUGUU................................................ len:24 al:1
.....................UUACUUCAAUGUUAaCGGUUUGU................................................. len:23 al:1
.....................cUACUUCAAUGUUAUCGGUUUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGgUUGU................................................. len:23 al:5
.....................UUACUUCAAUGUUAUCGGUUUc.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGUUaGU................................................. len:23 al:1
.....................UUACUUCuAUGUUAUCGGUUUGU................................................. len:23 al:3
.....................UUACcUCAAUGUUAUCGGUUUGU................................................. len:23 al:25
.....................UUACUUCgAUGUUAUCGGUUU................................................... len:21 al:1
.....................UUACaUCAAUGUUAUCGGUUUGU................................................. len:23 al:3
.....................UUACUUCAAUGUUAcCGGUUUGUU................................................ len:24 al:5
.....................UUACUUCAAUGUUAUCGGUUUGUU................................................ len:24 al:646
.....................UUACUUCAAUGUUAUCcGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGGUaUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUAUCGaUUUGU................................................. len:23 al:1046
.....................UUACUUCAAUGUUAUCaGUUUGU................................................. len:23 al:11
.....................aUACUUCAAUGUUAUCGGUUUGU................................................. len:23 al:11
.....................UUACUUCAAUGUUAUCGGUUUGUc................................................ len:24 al:175
.....................UUgCUUCAAUGUUAUCGGUUUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUcUCGGUUUGU................................................. len:23 al:1
.....................UUACUUCAAUGUUuUCGGUUUGU................................................. len:23 al:2
.....................UUACUUCAAUGUUAcCGGUUU................................................... len:21 al:1
.....................UUACUUaAAUGUUAUCGGUUUGU................................................. len:23 al:5
.....................UUACUUCAAUGUUAUCGGUUUGUUUA.............................................. len:26 al:5
.....................UUACUUCAAUGUUAUCGGUUUGUaU............................................... len:25 al:2
.....................UUACUcCAAUGUUAUCGGUUUGUUU............................................... len:25 al:1
.....................UUACUcCAAUGUUAUCGGUUUGU................................................. len:23 al:19
.....................UUACUUCAAUGUUAUCGaUUUG.................................................. len:22 al:1
.....................UUACUUCAAUGUUAUCGGcUUGU................................................. len:23 al:21
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......................gACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:2
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......................UACUUCAAUGUUAcCGGUUUG.................................................. len:21 al:1
......................UACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:7987
......................UACUUCAgUGUUAUCGGUUUGU................................................. len:22 al:29
......................UACUUCAAUGUUAUCGGUaUGUU................................................ len:23 al:1
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......................UACUUCAAUGUUAcCGGUUUGUU................................................ len:23 al:2
......................UACUUCAAUGUUAUCGGUgUGU................................................. len:22 al:2
......................UACUUCAAUGUUAUCGGUUUGUUaA.............................................. len:25 al:1
......................UACUUCAAUGUcAUCGGUUUGU................................................. len:22 al:15
......................UAuUUCAAUGUUAUCGGUUUGU................................................. len:22 al:7
......................UACUUCAAUGUUuUCGGUUUGU................................................. len:22 al:2
......................UACUUCAAUGUUgUCGGUUUGUU................................................ len:23 al:2
......................UgCUUCAAUGUUAUCGGUUUGU................................................. len:22 al:37
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......................cACUUCAAUGUUAUCGGUUUGUUU............................................... len:24 al:1
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......................UACUUuAAUGUUAUCGGUUUGU................................................. len:22 al:4
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......................UACUUCAAUGUUAUCGGUc.................................................... len:19 al:5
......................UACUcCAAUGUUAUCGGUUUGU................................................. len:22 al:25
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......................UACgUCAAUGUUAUCGGUUUGU................................................. len:22 al:2
......................UACUUCAAUGUUAUCGGUaU................................................... len:20 al:2
......................UACUUCAAUGUUAUCGGUaUGU................................................. len:22 al:3
......................UcCUUCAAUGUUAUCGGUUUGU................................................. len:22 al:5
......................UACUUCAAUGUUAUCGGU..................................................... len:18 al:6
......................UACUUCAAUGUUAUCGGUUcGU................................................. len:22 al:4
......................UACUUCAAUGaUAUCGGUUUGU................................................. len:22 al:2
......................UACUUCAAUGUUAUCuGUUUGUU................................................ len:23 al:1
......................UACUUCAAUGUUAUCGGUUUGUUUu.............................................. len:25 al:2
......................UACUUCAAUGUUAUCGGUUUuU................................................. len:22 al:2
......................UACUUCAAUGUUAUCGGUUUGUg................................................ len:23 al:13
......................UgCUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:2
......................UACUUCAAUGUUAUCGGUUUGUUc............................................... len:24 al:5
......................UACUUCAAUGUUAUCGGUUUGUaU............................................... len:24 al:5
......................UACUUCAAUGUUAaCGGUUUGU................................................. len:22 al:3
......................UACUUCAAUGUUAUCGGgUUGU................................................. len:22 al:3
......................cACUUCAAUGUUAUCGGUUU................................................... len:20 al:2
......................UACcUCAAUGUUAUCGGUUUGUU................................................ len:23 al:1
......................UuCUUCAAUGUUAUCGGUUUGU................................................. len:22 al:3
......................UACUUCAAUGUUAUCGGUUaGU................................................. len:22 al:3
......................UACUUCAAUGUUAUCGGUUUGUUUA.............................................. len:25 al:2
......................cACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:99
......................UACUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:497
......................UACUUCAAUGUUAUCGGUUUa.................................................. len:21 al:8
......................UACUUCAAUGUUAUCGGUUc................................................... len:20 al:11
......................UACUUCAAUGUUAUCaGUUUGU................................................. len:22 al:7
......................UACUUCgAUGUUAUCGGUUUGUUU............................................... len:24 al:1
......................UACUUCAAUGUUAUCGaUUUGU................................................. len:22 al:1096
......................UACUUCAgUGUUAUCGGUUUGUU................................................ len:23 al:3
......................UACUUCAAUGUUAUCGGUUUGa................................................. len:22 al:385
......................cACUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:5
......................aACUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:10
......................UACUUCAAUGUUAUCGGUUU................................................... len:20 al:54
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......................UACUUCAAUGUUAUCGGUa.................................................... len:19 al:1
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......................UACUUCAAUGUUAUCGGUUUGgU................................................ len:23 al:8
......................UACUUCAAUGUUAUCGGUUUaU................................................. len:22 al:63
......................UACUUCAAUaUUAUCGGUUUGU................................................. len:22 al:4
......................aACUUCAAUGUUAUCGGUUUG.................................................. len:21 al:1
......................UACUgCAAUGUUAUCGGUUUGU................................................. len:22 al:2
......................UACUUCAAUGUUAUgGGUUUGU................................................. len:22 al:1
......................aACUUCAAUGUUAUCGGUUUGU................................................. len:22 al:117
......................UACUUCAAaGUUAUCGGUUUGU................................................. len:22 al:1
......................UACUUCAAUGUUAcCGGUUUGU................................................. len:22 al:15
......................UcCUUCAAUGUUAUCGGUUUGUU................................................ len:23 al:1
......................UACUcCAAUGUUAUCGGUUUGUU................................................ len:23 al:2
......................UgCUUCAAUGUUAUCGGUUU................................................... len:20 al:1
......................UACUUCAAUGUUAUCGGUUUGaU................................................ len:23 al:3
......................UACUUaAAUGUUAUCGGUUUGU................................................. len:22 al:2
......................UACUUCAAUGUUAUCGGUU.................................................... len:19 al:9
......................UACUUCgAUGUUAUCGGUUUG.................................................. len:21 al:1
......................UACUUCAAUGUUAUCGGUUUG.................................................. len:21 al:56
......................UACUUCgAUGUUAUCGGUUUGUU................................................ len:23 al:1
......................UACUUCAAUGUUAUCGaUUU................................................... len:20 al:1
......................UACUUCAAUGUUAUCGGUUUGc................................................. len:22 al:1990
......................UACUUCAAUGUUAUCGGc..................................................... len:18 al:2
......................UACUUCAAUGUUAUCGGUUUGUaUA.............................................. len:25 al:1
......................UACUUCAAUGUUAUCGGUUUcU................................................. len:22 al:4
......................UACUUCAAUGUUAUCGGUUgGU................................................. len:22 al:6
......................UACUUCAAUGUUAUCGGUUUGg................................................. len:22 al:610
......................UACUaCAAUGUUAUCGGUUUGU................................................. len:22 al:5
......................UACUUCAAUGUUAUCGGUUUGUUa............................................... len:24 al:34
......................UACUUCAAUGUUAUCGaU..................................................... len:18 al:1
......................UACUUCgAUGUUAUCGGUUUGU................................................. len:22 al:26
......................UACUUCAAcGUUAUCGGUUUGU................................................. len:22 al:17
......................aACUUCAAUGUUAUCGGUUU................................................... len:20 al:2
......................UACUUCAcUGUUAUCGGUUUGU................................................. len:22 al:2
......................UACUUCAAUGUUAUCGGUUUGUc................................................ len:23 al:108
......................UACUUCAAUGUUAUCGGUUgG.................................................. len:21 al:1
......................UACUUCAAUGUUgUCGGUUUGU................................................. len:22 al:11
......................UACUUCAAUGgUAUCGGUUUGU................................................. len:22 al:1
......................UACUUCAAUGUUAUCGGUUUGUa................................................ len:23 al:56
......................UACUUCAAUGUUAUCGGUUa................................................... len:20 al:5
......................UACUUCAAUGUUAUCGGUg.................................................... len:19 al:1
......................UACUUCAAUGUUAUCGGaUUGU................................................. len:22 al:3
......................UACUUCAAUGUUAUCGGUUUu.................................................. len:21 al:2
......................UACUUCAAUGUUAUCGGUcUGU................................................. len:22 al:67
.......................ACUUCAAUGUUAUCGGUUUGa................................................. len:21 al:3
.......................ACUUCAAUGUUAUCGGUUUGU................................................. len:21 al:6
.......................ACUUCAAUGUUAUCGGUUUGc................................................. len:21 al:1
.......................ACUUCAAUGUUAUCGGUUUGUc................................................ len:22 al:2
.......................ACUUCAAUGUUAUCGGUUUaU................................................. len:21 al:1
.......................ACUUCAAUGUUAUCGGUUUGUU................................................ len:22 al:1
........................CUUCAAUGUUAUCGGUUUGU................................................. len:20 al:7
........................CUUCAAUGUUAUCGGUUUGUU................................................ len:21 al:1
........................CUUCAAUGUUAUCGGUUU................................................... len:18 al:1
........................CUUCAAUGUUAUCGGUUUGUUa............................................... len:22 al:1
........................CUUCAAUGUUAUCGGUUUGa................................................. len:20 al:2
........................CUUCAAUGUUAUCGGUUUGc................................................. len:20 al:3
.........................UUCAAUGUUAUCGGUUUGU................................................. len:19 al:88
.........................UUCAAUGUUAUCGGUUUaU................................................. len:19 al:1
.........................UUCAAUGUUAUCGGUUUGUU................................................ len:20 al:36
.........................UUCAAUGUUAUCGGUUUGgU................................................ len:20 al:3
.........................UUCAAUGUUAUCGGUUUGUa................................................ len:20 al:4
.........................UUCAAUGUUAUCGGUUUGc................................................. len:19 al:19
.........................UUCAAUGUUAUCGaUUUGU................................................. len:19 al:21
.........................UUCAAUGUUAUCGGUUUGa................................................. len:19 al:5
.........................UUCgAUGUUAUCGGUUUGUU................................................ len:20 al:1
.........................UUCAAUGUUAUCGGUUUGUaU............................................... len:21 al:2
.........................UUCAAUGUUAUCGGUUUGg................................................. len:19 al:7
.........................UUCAAUGUUAUCGGUUUGUc................................................ len:20 al:6
.........................UUCAAUGUUAUCGGUUUGcU................................................ len:20 al:1
.........................UUCAAUGUUAUCGGUUUGUg................................................ len:20 al:1
.........................UUCAAUGUUAUCGGUUUG.................................................. len:18 al:1
.........................UUCAAUGUUAUCGGUUUGUUa............................................... len:21 al:1
..........................UCAAUGUUAUCGGUUUGU................................................. len:18 al:3
...........................CAAUGUUAUCGGUUUGUUa............................................... len:19 al:1
............................uAUGUUAUCGGUUUGUU................................................ len:17 al:1
............................AAUGUUAUCGGUUUGUU................................................ len:17 al:1
..................................................CGAACCGAUAACAUUGAAGUUAAAACACA.............. len:29 al:1
...................................................GAACCGAUAACAUUGAAu........................ len:18 al:2
...................................................GAACCGAUAACAUUGAAG........................ len:18 al:7
...................................................aAACCGAUAACAUUGAAGUUA..................... len:21 al:1
...................................................GAACCGAUAACAUUGgAGU....................... len:19 al:1
...................................................GAACCGAUAACAUUGAAGU....................... len:19 al:3
...................................................GAACCGAUAACAUUGAAGa....................... len:19 al:1
...................................................GAACCGAUAACAUUGAAGUU...................... len:20 al:2
...................................................GAACCGAUAACAUUGAAGc....................... len:19 al:2
...................................................GAACCGAUAACAUUGAAc........................ len:18 al:2
...................................................GAACCGAUAACAUUGAAGaU...................... len:20 al:1
...................................................GAACCGAUAACAUUGAAGUUAA.................... len:22 al:2
...................................................GAACCGAUAACAUUGAAGUUA..................... len:21 al:7
...................................................GAACCGAUAACgUUGAAGUUAA.................... len:22 al:1
...................................................GAACCGAUAACAUUGA.......................... len:16 al:1
...................................................GAACCGAUAACAUUGAAGUUAAAu.................. len:24 al:1
...................................................GAACCGAUAACAUUGAAa........................ len:18 al:1
...................................................GAgCCGAUAACAUUGAAGUUA..................... len:21 al:1