Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000009:3894900-3894992 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_2973.ps.pdf
Locus Name: Cluster_2973
ACAAAGCCGGUUUGACCGAAUAGCAUAACAUUGUAAGAGAUCUUUAAGAGCUCUUGCAUUGUUGUGCUGUUCGGGAAAGCUUAAUCAACAGCG
........(((((..(((((((((((((((.((((((((.(((...))).)))))))).)))))))))))))))..)))))............ (-43.00)
....................UAGCAUAACAUUGUAAGAGgUC................................................... len:22 al:4
....................UAGCAUAuCAUUGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAgG........................................................ len:17 al:2
....................UAGCAUAACAUUGUAAGAaAUC................................................... len:22 al:2
....................UAGCAUAACAUUGUAAGAa...................................................... len:19 al:1
....................UAGCAUAACuUUGUAAG........................................................ len:17 al:1
....................cAGCAUAACAUUGUAAG........................................................ len:17 al:3
....................UAGCAUAACAUUGUAAGAGAUCc.................................................. len:23 al:2
....................UAGCAUAACAUUGUAAGAGA..................................................... len:20 al:4
....................UAGCAUAACAUUGUAAGAGAUCU.................................................. len:23 al:17
....................UAGCAUAACAUUGUAAGgGAUC................................................... len:22 al:2
....................UAuCAUAACAUUGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUUUAu.............................................. len:27 al:2
....................UAGCAUAACAUUGUAAGAGAcC................................................... len:22 al:1
....................UAGCAUAACAUUGUAAGAGAU.................................................... len:21 al:1
....................UAGCAUAACAUUGUAcG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAG........................................................ len:17 al:330
....................UAGCAUAACAUUGUAAGAGAUu................................................... len:22 al:8
....................UAGCAUAACAUUGUAAGAGAUa................................................... len:22 al:11
....................UAGCAUAACAUUGUAAGAGAUC................................................... len:22 al:4
....................UAGCAUAACAUUGUAAGAGAaC................................................... len:22 al:6
....................UAGCAUAACAUUGUAAGAuAUC................................................... len:22 al:1
....................UAGCAUAACAUUGUAAGAGAgC................................................... len:22 al:1
....................UAGCAUAACAUcGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCUc................................................. len:24 al:2
....................UAaCAUAACAUUGUAAG........................................................ len:17 al:1
....................UAGCAUAACAUUGUAAGAGAUCa.................................................. len:23 al:25
....................UgGCAUAACAUUGUAAG........................................................ len:17 al:2
.......................................AUCUUUAuGAGCUCUUGC.................................... len:18 al:1
........................................UCUUUAuGAGCUCUUGCAUUGUUGUGCUGUU...................... len:31 al:1
.........................................CUUUAuGAGCUCUUGCAU.................................. len:18 al:1
..........................................UUUAuGAGCUCUUGCAUUGUUGUGCUGUU...................... len:29 al:3
..............................................uGAGCUCUUGCAUUGUUGUGCUGUU...................... len:25 al:1
.................................................GCUCUUGCAUUGUUGUGCUG........................ len:20 al:1
.................................................GCUCUUGCAUUGUUGUaCUGUU...................... len:22 al:1
.................................................GCUCUUGCAUUGUUuUGCUGUU...................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCUGcU...................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCUGUUa..................... len:23 al:1
.................................................GCUCUUGCAUUGUUGUGCUGUU...................... len:22 al:79
.................................................GaUCUUGCAUUGUUGUGCUGUU...................... len:22 al:1
.................................................GCUCUUGCAUUGUUGUGCUGUc...................... len:22 al:24
.................................................uCUCUUGCAUUGUUGUGCUGUU...................... len:22 al:2
.................................................GCUCUUGCAUUGUUGUGCUGU....................... len:21 al:2
.................................................aCUCUUGCAUUGUUGUGCUGUU...................... len:22 al:3
.................................................GCUCUUGCAUUGUUGUGCUGgU...................... len:22 al:4
.................................................GCUCUUGCAUUGUUGUGCUGUa...................... len:22 al:9
.................................................GCUCUUGCAUUGUUGUGCUGaU...................... len:22 al:2