Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:5387738-5387830 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_2859.ps.pdf
Locus Name: Cluster_2859
UAUUGCUCAUUCAAAUGCUCGCUGGAAUUGUACAGAAGAUGAUUUAAUCAACUUUUCUACAAUUCCAGUGGAUAUUUGUUUCAGAAACAUUUA
.....((.(..((((((.((((((((((((((.(((((.((((...)))).))))).)))))))))))))).))))))..).))......... (-30.90)
.............AAUGCUCaCUGGAAUUGUAC............................................................ len:20 al:1
.................CUCGCUGGAAUUGUACAGAAGAUG.................................................... len:24 al:1
.................CUCGCUGGAAUUGUACAGAAGAUGAUU................................................. len:27 al:1
..................UCGCUGGAAUUGUACAGAAGAU..................................................... len:22 al:1
..................UCGCUGGAAUUGUACAGu......................................................... len:18 al:1
..................UCGCUGGAAUUGUACAGAAGAUGc................................................... len:24 al:1
..................UCGCUGGAAUUGUACAGAAGAUGA................................................... len:24 al:8
..................UCGCUGGAAUUGUACAGAAGAUGAUUUc............................................... len:28 al:1
..................UCGCUGGAAUUGUACAGAAGAUGg................................................... len:24 al:1
..................UCaCUGGAAUUGUACAGAAGAUGA................................................... len:24 al:19
..................UCGCUGGgAUUGUACAGAAGAUGA................................................... len:24 al:1
..................UCGCUGGAAUUGUACAGAAGAUG.................................................... len:23 al:10
..................UCGCUGGAAUUGUACAGAAGAUa.................................................... len:23 al:1
..................UCGCUGGAAUUGUACAGAAGAUGu................................................... len:24 al:2
..................UCGCUGGAAUUGUACAGAAGA...................................................... len:21 al:1
..................UCaCUGGAAUUGUACAGAAGAUG.................................................... len:23 al:8
..................UCGCUGGAAUUGUACAGA......................................................... len:18 al:4
..................UCGCUGGAAUUGUACAGAAGAUGAUU................................................. len:26 al:2
..................UCGCUGGAAUUGUACAGAAGAUuA................................................... len:24 al:1
..................cCGCUGGAAUUGUACAGAAG....................................................... len:20 al:1
..................UCGCUGGAAUUGUACAGAAGAgG.................................................... len:23 al:2
..................UCaCUGGAAUUGUACAGA......................................................... len:18 al:3
..................UCaCUGGAAUUGUACAGAAGAUGAU.................................................. len:25 al:1
...................CaCUGGAAUUGUACAGAAGAUGAUU................................................. len:25 al:2
...................CGCUGGgAUUGUACAGAAGAUGA................................................... len:23 al:1
...................CGCUGGAAUUGUACAGAAGAUG.................................................... len:22 al:21
...................CGCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:139
...................CGCUaGAAUUGUACAGAAGAUGA................................................... len:23 al:1
...................CGCUGGAAUUGUACAGAAGAUaA................................................... len:23 al:3
...................CGCUGGAAUUGUACAGAAGAUGg................................................... len:23 al:8
...................uGCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:2
...................CGCUGGAAUUGUACAGgAGAUGA................................................... len:23 al:1
...................CaCUGGAAUUGUACAGAAGAU..................................................... len:21 al:1
...................CGCUGGAAUUGUACAGAAGAUGu................................................... len:23 al:3
...................CGCUGGAAUUGUACAGAAGAUGc................................................... len:23 al:1
...................CcCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:1
...................CGCUGGAgUUGUACAGAAGAUGA................................................... len:23 al:1
...................CaCUGGAAUUGUACAGAAGAUG.................................................... len:22 al:8
...................CGCUGGAAUUGUACAGAAGAaG.................................................... len:22 al:1
...................CGCUGGAAUUGUACAGAAGAUGAgU................................................. len:25 al:2
...................CGCUGGAAUUGUACAGAAGAUGAa.................................................. len:24 al:1
...................CGCUGGAAUUGUACAGAAGAUa.................................................... len:22 al:5
...................CaCUGGAAUUGUACAGAAGAUGA................................................... len:23 al:39
...................CGCUGGAAUUGUACAGAAGAUGAc.................................................. len:24 al:1
...................CaCUGGAAUUGUACAGAAGAUGAU.................................................. len:24 al:3
...................CGCUGGAAUUGUACAGAAGAUGAUU................................................. len:25 al:1
...................CGCUGGAAUUGUACAGAgGAUGAU.................................................. len:24 al:1
...................CGCUGGAAUUGUACAGAAGAUGAUa................................................. len:25 al:11
...................CGCUGGAAUUGUACAGAAGAUu.................................................... len:22 al:2
...................CGCUGGAAUUGUACAGAAGAUGAU.................................................. len:24 al:7
...................CGCUGcAAUUGUACAGAAGAUG.................................................... len:22 al:1
....................GCUGaAAUUGUACAGAAGAUGA................................................... len:22 al:1
....................aCUGGAAUUGUACAGAAGAUGA................................................... len:22 al:54
....................GCUGGAAUUGUACAGAAGAUGc................................................... len:22 al:1
....................GCUGGAAUUGUACAGAAGAUGAUUUu............................................... len:26 al:1
....................GCUGGAAUUGUACAGAAGAUG.................................................... len:21 al:1
....................GCUGGAAUUGUACAGAAGAcGA................................................... len:22 al:1
....................GCUGGAAUUGUACAGAAGAUGA................................................... len:22 al:43
....................aCUGGAAUUGUACAGAAGAUG.................................................... len:21 al:5
....................GCUGGAAUUGUACAGAAGAUGu................................................... len:22 al:5
......................UGGAAUUGUACAGAAGAUGA................................................... len:20 al:20
......................UGuAAUUGUACAGAAGAUG.................................................... len:19 al:1
......................UGGAgUUGUACAGAAGAUGA................................................... len:20 al:1
......................UGGAAUUGUACAGAAGAUG.................................................... len:19 al:4
......................UGGAAUUGUACAGAAGAUGg................................................... len:20 al:2
......................UGGAAUUGUACAGAAGAUGAU.................................................. len:21 al:1
................................................CAACUUUUCUACAAUUCCAGa........................ len:21 al:3
................................................CAACUUUUCUACAAUUCCAGUG....................... len:22 al:1
................................................CAACUUUUCUACAAUUCCAGU........................ len:21 al:2
................................................CAACUUUUCUACAAUUCCAGUGGA..................... len:24 al:3
.................................................AACUUUUCUACAgUUCCAGUG....................... len:21 al:1
.................................................AACUUUUCUACAAUUCCAGUGa...................... len:22 al:58
.................................................AACUUUUCcACAAUUCCAGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGU........................ len:20 al:147
.................................................AACUUUUCcACAAUUCCAGUGGA..................... len:23 al:1
.................................................cACUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCuAGUG....................... len:21 al:1
.................................................AACUUUUCUACAAUUCCAGc........................ len:20 al:37
.................................................AACUUUUCUACAAUUuCAGU........................ len:20 al:2
.................................................AACUUUUCUACAAUcCCAGUGGA..................... len:23 al:3
.................................................AACcUUUCUACAAUUCCAGUG....................... len:21 al:1
.................................................gACUUUUCUACAAUUCCAGUGG...................... len:22 al:2
.................................................AAuUUUUCUACAAUUCCAGUGG...................... len:22 al:1
.................................................gACUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AAuUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUGcA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUGGc..................... len:23 al:29
.................................................AACUUUUCUACAAUUCCAGaG....................... len:21 al:2
.................................................AACUUUUCUACAAUUCCAGgGG...................... len:22 al:1
.................................................AACUUUUCUACAAUUCCAGUcG...................... len:22 al:1
.................................................AACUUUUCUAuAAUUCCAGUGG...................... len:22 al:1
.................................................AACUUUUCUACAAUUCCAG......................... len:19 al:2
.................................................AACUUUUCUACAAUUCCAGUGu...................... len:22 al:19
.................................................AACUUUUCUACAAUUCCgGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCgGUGGA..................... len:23 al:1
.................................................AuCUUUUCUACAAUUCCAGUG....................... len:21 al:1
.................................................AACUUUUCUACAAUUCCAGUGc...................... len:22 al:11
.................................................AACUUUUCUACAAUUCCAGg........................ len:20 al:3
.................................................AACUUUUCUACAAUUCCAGUGG...................... len:22 al:145
.................................................AACUUUUCUACAAUUCCAGUG....................... len:21 al:84
.................................................AACUUUUCUACAAUUCCAGUGGA..................... len:23 al:274
.................................................AACUUUUCUACAAUUCC........................... len:17 al:1
.................................................AACUUUUCUACAAUUCCAcU........................ len:20 al:1
.................................................AACUUUUCUACAAUcCCAGU........................ len:20 al:1
.................................................AACUgUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGUa....................... len:21 al:20
.................................................AACUUUUCUgCAAUUCCAGUGGA..................... len:23 al:1
.................................................AACcUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGgG....................... len:21 al:5
.................................................AACUUUUCUACAAUUCCAGUGGAUA................... len:25 al:5
.................................................AACUUcUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGa........................ len:20 al:2
.................................................AACUUUUCUACAAUUCCAGUGGg..................... len:23 al:21
.................................................AgCUUUUCUACAAUUCCAGUGG...................... len:22 al:1
.................................................AACUUUUCUACAAUUCCAGUGGu..................... len:23 al:98
.................................................AACUUUUCUACAAUUCCAGUaG...................... len:22 al:4
.................................................AcCUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAGcGGA..................... len:23 al:1
.................................................AACUUUUCUACAAUUCCAaU........................ len:20 al:5
.................................................AgCUUUUCUACAAUUCCAGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCuGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGUGGAUu................... len:25 al:9
.................................................AACUUUUCUACAAUUCCAGUGGuUA................... len:25 al:1
.................................................AACcUUUCUACAAUUCCAGU........................ len:20 al:1
.................................................AACUUUUCUACAAUUCCAGcG....................... len:21 al:3
.................................................AgCUUUUCUACAAUUCCAGUGGA..................... len:23 al:1
..................................................ACUUUUCUACAAUUCCAGU........................ len:19 al:1
...................................................CUUUUCUACAAUUCCAGUGG...................... len:20 al:1
...................................................CUUUUCUACAAUUCCAGUGGAUu................... len:23 al:1