Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:3619341-3619435 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_2839.ps.pdf
Locus Name: Cluster_2839
GGGGUAUCUUAAUACACACACAUUUUUAAACUGAAACACUGCAAUUGUUGUUGUGCUUUGGUUCAAAAAUGUCUGUAUAUCAAGAAAAGUCAUUA
((....((((.(((.(((.((((((((.(((((((.(((.((((...)))).))).))))))).)))))))).))).))).))))....)).... (-22.70)
...................ACAUUUUUAAACUGAAACACUGCA.................................................... len:24 al:1
....................CAUUUUUAAACUGAAACACUGu..................................................... len:22 al:4
....................CAUUUUUAAACUGAAACACUGCAAgU................................................. len:26 al:2
....................CAUcUUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACUGAAACACUaC..................................................... len:22 al:2
....................CAUUUUUAAACUGAAACACUGCg.................................................... len:23 al:3
....................CAUUUUUAAACUGAAACACUGCAAUUGUUGU............................................ len:31 al:1
....................uAUUUUUAAACUGAAACACUGCA.................................................... len:23 al:1
....................CAUUUUUAAACUGAAACACUGC..................................................... len:22 al:19
....................CAUUUUUAAACcGAAACACUGC..................................................... len:22 al:1
....................CAUUUUUAAACUGAAACACUGCAAU.................................................. len:25 al:1
....................CAUUUUUAAACUGAAACACUGCA.................................................... len:23 al:20
....................CAUUUUUAAACUGAAACACUGCAA................................................... len:24 al:1
....................CAUUUUUAAACUGAAcCACUGCAAUUGUUGU............................................ len:31 al:1
....................CAUUUUUgAACUGAAACACUGC..................................................... len:22 al:2
....................CAUUUUUAAACUGAAACACUGa..................................................... len:22 al:3
.....................AUUUUUAAACUGAAACACUGCA.................................................... len:22 al:6
.....................AUUUUUAAgCUGAAACACUGCA.................................................... len:22 al:1
......................UUUUUAAACUGAAACACUGCA.................................................... len:21 al:5
......................UUUUUAAACUGAAACACUGu..................................................... len:20 al:1
......................UUUUUAAACUGAAACACUGa..................................................... len:20 al:2
......................UUUUUAAACUGAAACACUGC..................................................... len:20 al:2
.........................UUAAACUGAAACACUGCAAUUGUUGUUGU......................................... len:29 al:1
..................................................UUGUGCgUUGGUUCAAAAAUGUCU..................... len:24 al:1
..................................................UUGUGCUUUGGUUuAAAAA.......................... len:19 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGUC...................... len:23 al:1
..................................................UUGUGCUUUGGUUCAAAA........................... len:18 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGUCU..................... len:24 al:3
..................................................UUGUGCUUUGGUUCAAAAAUGUCg..................... len:24 al:1
..................................................UUGUGCUUUGGUUCAAAAAUGU....................... len:22 al:3
...................................................UGUGCUUUGGUUCAAAAAUGUCUu.................... len:24 al:2
...................................................UGUGCUUUGGUUCAAAAAUGUCUc.................... len:24 al:1
...................................................UGcGCUUUGGUUCAAAAA.......................... len:18 al:1
...................................................UGUGCUUUGGUUCgAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAgAAAUGU....................... len:21 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUCU..................... len:23 al:11
...................................................cGUGCUUUGGUUCAAAAA.......................... len:18 al:1
...................................................UGUGCUUUGGUUCAAAAAUGaC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUGa....................... len:21 al:2
...................................................UGUGCUUUGGUUCAAAAAUGU....................... len:21 al:5
...................................................UGUGCUUUGGUUCAAAAAa......................... len:19 al:5
...................................................UGUGCUUUGGUUCAA............................. len:15 al:1
...................................................aGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:148
...................................................UGUGCUUUGGUUCAAAAAUGUCaG.................... len:24 al:1
...................................................UGUGCUUUGGUUCAAAAAU......................... len:19 al:2
...................................................cGUGCUUUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUGc....................... len:21 al:2
...................................................UGUGCUUUGGUUCAAAAAUGUCc..................... len:23 al:3
...................................................UGUGCUUUGGUUCAAAAAUGgCU..................... len:23 al:1
...................................................UGUGCUUUGGUUCAAAAu.......................... len:18 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUCg..................... len:23 al:5
...................................................UGUGCUUUGGUUCAAAAAUGUCa..................... len:23 al:10
...................................................UGUGCUUUGGUUCAAAAAUGUa...................... len:22 al:5
...................................................UGUGCUUUGGUUCAAAAAUG........................ len:20 al:3
...................................................UGUGCUUUGGUUCAAAAAUGUCUa.................... len:24 al:1
...................................................UaUGCUUUGGUUCAAAAAUG........................ len:20 al:1
...................................................UGUGCUUUGGUUCAAAAAUGUu...................... len:22 al:8
...................................................UGUGCUcUGGUUCAAAAAUGUC...................... len:22 al:1
...................................................UGUGCUUUGGUUCAAAAAUa........................ len:20 al:1
...................................................UGUGCUUUGGUUCAAAAAUGcC...................... len:22 al:5
...................................................UGUGCUUUGGUUCAAAAA.......................... len:18 al:39
.......................................................CUUUGGUUCAAAAAUGgCUG.................... len:20 al:1