Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:3576420-3576514 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_2837.ps.pdf
Locus Name: Cluster_2837
AUUCCGUCAGGGUUUUUGUCAUCGAUGGAACACACAAGUAGAGAUUAUAUACUUUACUUGUUGUAUUCUAUUAUAACAGAGACCUAAUUCGUUGA
....((...((((((((((.((.(((((((.((((((((((((........))))))))).))).))))))))).))))))))))....)).... (-30.50)
..UCCGUCAGGGUUUUUGUCAg......................................................................... len:20 al:1
.....................UCGAUGGAACACACAAGUAGAGA................................................... len:23 al:1
......................CGAUGGAACACACAAGUAGAuA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAG.................................................... len:21 al:5
......................CGAUGGAACACACAAGUAGAGAUU................................................. len:24 al:1
......................CGAUGGAACACACAAGUAGgGA................................................... len:22 al:3
......................CGAUGGAgCACACAAGUAGAGA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAGAU.................................................. len:23 al:1
......................CGAUGGAACACACAAGUAa...................................................... len:19 al:4
......................CGAUGGAACACACAAGUAG...................................................... len:19 al:12
......................CGAUGGAACACACAAGUAGAGA................................................... len:22 al:89
......................CGAUGGgACACACAAGUAGAGA................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAGg................................................... len:22 al:3
......................aGAUGGAACACACAAGUAGAGA................................................... len:22 al:2
......................CGAUGGAACACACAAGUAGAGAa.................................................. len:23 al:1
......................CGAUGGAACACACAAGUAGAa.................................................... len:21 al:2
......................CaAUGGAACACACAAGUAGAGA................................................... len:22 al:2
......................CGAUGGAACACACAAGUAGAGu................................................... len:22 al:1
......................CGAUGGAACACACAAGUAGAGc................................................... len:22 al:2
......................CGAUGGAACACACAAGUAGA..................................................... len:20 al:2
......................CGAgGGAACACACAAGUAGAGA................................................... len:22 al:1
.......................GAUGGAACACACAAGUAGAGAUUAU............................................... len:25 al:1
.......................GAUGGAACACACAAGUAGAGA................................................... len:21 al:2
....................................................UUUACUUGUUGUAUUCUAUUAUA.................... len:23 al:4
....................................................UUUACUUGUUGUAUUCUAUUAUu.................... len:23 al:44
....................................................UUUACUUGUUGUAUUCUAUUAU..................... len:22 al:3
....................................................UUUACUUGUUGUAUUCUAUUAUg.................... len:23 al:1
....................................................UUUACUUGUUGUAUUCUA......................... len:18 al:1
....................................................UUUACUUGUUGUAUUCUAUUAUc.................... len:23 al:4
....................................................UUUACUUGUUGUAUUCUAUUAUuA................... len:24 al:1
.....................................................UUAuUUGUUGUAUUCUAUUAU..................... len:21 al:1
.....................................................UUACUUGUUGUAUUCUAUUAUu.................... len:22 al:61
.....................................................UUACUUGUUGUAUUCUAUUAUuA................... len:23 al:4
.....................................................UUACUUGUUGUAUUCUAUUAUc.................... len:22 al:7
.....................................................UUACUUGUUGUAUUCUAUUAU..................... len:21 al:3
.....................................................UUACUUGUUGUAUUCUAUUAUA.................... len:22 al:8
.....................................................UUACUUGUUGUAUUCUAUU....................... len:19 al:5
.....................................................UUACUUGUUGUAUUCUAUc....................... len:19 al:2
......................................................UACUUGUUGUAUUCUAUUAUu.................... len:21 al:1
.......................................................ACUUGUUGUAUUCUAUUAUu.................... len:20 al:1
.........................................................UUGUUGUAUUCUAUUAUu.................... len:18 al:1
.........................................................UUGUUGUAUUCUAUUAUA.................... len:18 al:2