Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000008:1783802-1783891 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_2793.ps.pdf
Locus Name: Cluster_2793
CCACCAUGUGAUCACCUGUGUUUAUGUUUUGGCUUGUUCCCAAUUUUUUGAGAGUAAGCCAACUCAUAAACAUCGACCGGUCAAUGCUCA
....(((.(((((....(((((((((..(((((((((((.(((....))).)))))))))))..))))))))).....)))))))).... (-29.50)
..ACCAUGUGAUCACCUGUa...................................................................... len:18 al:1
...aCAUGUGAUCACCUGUGUU.................................................................... len:19 al:1
...CCAUGUGAUCACCUGUGgU.................................................................... len:19 al:2
...CCAUGUGAUCACCUGUGUa.................................................................... len:19 al:2
...CCAUGUGAUCACCUGUGUU.................................................................... len:19 al:2
....CAUGUGAUCACCUGUGUU.................................................................... len:18 al:4
....CAUGcGAUCACCUGUGUU.................................................................... len:18 al:1
......UGUGAUCACCUGUGUU.................................................................... len:16 al:1
.....................UUAUGUUUUGGCUUGUUC................................................... len:18 al:44
.....................UUAUGUUUUGGCUUGUUuCCA................................................ len:21 al:6
.....................UUAUGUUUUGGCUUGUUuC.................................................. len:19 al:22
.....................UUAUGUUUUGGCUUGUcC................................................... len:18 al:1
.....................UUAUGUUUUGGCUUGUUuCC................................................. len:20 al:2
.....................UUAUGUUUUGGCUUGUUu................................................... len:18 al:13
.....................cUAUGUUUUGGCUUGUUCCC................................................. len:20 al:1
.....................UUAUGUUUUGGCUUGUUCaC................................................. len:20 al:1
.....................UUAUGUUUUGGCUUGUUCuCA................................................ len:21 al:4
.....................UUAUGUUUUGGCUUGUUCC.................................................. len:19 al:1
......................UAUGUUUUGGCUUGUUCCu................................................. len:19 al:59
......................UAUGUUUUGGCUUGUUCCCAg............................................... len:21 al:4
......................UAUGUUUUGGCUUGUUCCCAAU.............................................. len:22 al:6
......................aAUGUUUUGGCUUGUUCCCA................................................ len:20 al:3
......................UAUGUUUUGGCUUGUUCaCA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUUCCCAuU.............................................. len:22 al:1
......................UAUGUUUUGGCUUGUUCuCAA............................................... len:21 al:1
......................UAUGUUUUGGCcUGUUCCCA................................................ len:20 al:2
......................UAUGUUUUGGCUUGUUCCCAA............................................... len:21 al:71
......................cAUGUUUUGGCUUGUUCCC................................................. len:19 al:1
......................UAUGUUUUGGCUUGUUuCC................................................. len:19 al:1
......................UAUGUUUUGGCUUGUUCCCcA............................................... len:21 al:1
......................UAUGUUUcGGCUUGUUCCCAA............................................... len:21 al:1
......................UAUGUUUUGGCUUGUUCCg................................................. len:19 al:10
......................UAUGgUUUGGCUUGUUCCCA................................................ len:20 al:1
......................UAUGUcUUGGCUUGUUCCCA................................................ len:20 al:2
......................UAUGUUUUGGCUcGUUCCCA................................................ len:20 al:2
......................UAUGUUUUGGCUUGUUCCa................................................. len:19 al:85
......................cAUGUUUUGGCUUGUUCCCA................................................ len:20 al:4
......................UAUGUUUUGGCUUGUUCCCc................................................ len:20 al:7
......................aAUGUUUUGGCUUGUUCCCAA............................................... len:21 al:1
......................UAUGUUUUGGCUUGUUCa.................................................. len:18 al:11
......................UAUGUUUUGGCUUaUUCCCAA............................................... len:21 al:1
......................UAUGUUUUGGCUUGUUCC.................................................. len:18 al:31
......................UAUGUUUUGGCUUGcUCCC................................................. len:19 al:3
......................UAUGUUUUGGCUUGUUCCCu................................................ len:20 al:5
......................UAUGUUUUGGCUcGUUCCCAA............................................... len:21 al:2
......................UAUGUUUUGGCUUGUUCCCAAUUUUUUG........................................ len:28 al:1
......................UAUGUUUUGGCUUGUUCCCAAUUUUUUGAGA..................................... len:31 al:4
......................UAUGUUUUGGCUUGUUCCC................................................. len:19 al:216
......................UAUGUUcUGGCUUGUUCCCA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUUCCCA................................................ len:20 al:330
......................UAUGUUUUGGCUUGUUCCuA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUcCCCAA............................................... len:21 al:1
......................UAUGUUUUGGCUUGUUuCCA................................................ len:20 al:1
......................UAUGUUgUGGCUUGUUCCCA................................................ len:20 al:1
......................UAUGUUUUGGCUUGUUCuC................................................. len:19 al:1
......................UAUGUUUUGGCUUGUUCCCAgU.............................................. len:22 al:1
......................UAUGUUUUGGCUUGUUCCCgA............................................... len:21 al:2
......................UAUGUUUUGGCUUGUUCCCgAU.............................................. len:22 al:2
......................UAUGUUUUGGCUUGUUCCCAc............................................... len:21 al:3
......................UAUGUUUUGGCUUGUUCCCAu............................................... len:21 al:5
......................UAcGUUUUGGCUUGUUCCC................................................. len:19 al:2
......................UAUGUUUUGGCUUGUUCCCg................................................ len:20 al:27
......................cAUGUUUUGGCUUGUUCCCAA............................................... len:21 al:1
.......................AUGUUUcGGCUUGUUCCCAAUU............................................. len:22 al:1
.......................AUGUUUUGGCUUGUUCCC................................................. len:18 al:2
........................UGUUUUGGCUUGUUCCCAuU.............................................. len:20 al:1
........................UGUUUUGGCUUGUUCCCAAUUUUUUGAu...................................... len:28 al:1
........................................CAAUUUUUUGAGAGUAAGCCAAuUCA........................ len:26 al:1
........................................CAAUUUUUUGAGAGUAAGCCAAuUCAUAAA.................... len:30 al:1
................................................UGAGAGUAAGCCAAuUCAUAAA.................... len:22 al:1
.................................................GAGAGUAAGCCAAuUCAUAAAC................... len:22 al:1
.................................................GAGAGUAAGCCAAuUCAUA...................... len:19 al:1
.................................................GAGAGUAAGCCAAuUCAUAAA.................... len:21 al:1
..................................................AGAGUAAGCCAAuUCAUAAA.................... len:20 al:1
......................................................................CAUCGgCCGGUCAAUGCU.. len:18 al:2