Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000005:11260734-11260823 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_1952.ps.pdf
Locus Name: Cluster_1952
UCUUUGUGUUAUUUCUUCCCAUGCCAGGUCCUAGCUUGAAAAUUGUGUUCAGGUUAGGAGCAUGGUAUAGAAAGAGAUGCACCUUGUUCA
.....((((.(((((((.(.(((((((.((((((((((((.......)))))))))))).).)))))).).)))))))))))........ (-35.10)
UCUUUGUGUUAUUUCUUCa....................................................................... len:19 al:1
UCUUUGUGUUAUUUCUUCC....................................................................... len:19 al:5
.CUUUGUGUUAUUUCUUCC....................................................................... len:18 al:1
...................CAUGCCAGGUCCUAGuUUGAA.................................................. len:21 al:2
...................CAUGCCAGGUCCUAaCUUGAA.................................................. len:21 al:11
...................CAUGgCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUUC........................................ len:31 al:1
...................CAUGCCAGGUCCUAGCUUGAg.................................................. len:21 al:22
...................CAcGCCAGGUCCUAGCUUGAAA................................................. len:22 al:2
...................CAUGCCAGGUCCUAGCUUGAAAcU............................................... len:24 al:12
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUU......................................... len:30 al:4
...................CAUGCCAGGUCCUAGCUUaAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUa..................................................... len:18 al:2
...................CAUGCCAGGUCCUAGCUgG.................................................... len:19 al:4
...................CAUGCCAGGcCCUAGCUUGAA.................................................. len:21 al:4
...................uAUGCCAGGUCCUAGCUUGAAAAUUGUG........................................... len:28 al:1
...................CAUGCCgGGUCCUAGCUUGAAA................................................. len:22 al:24
...................CAUGCCgGGUCCUAGCUUG.................................................... len:19 al:1
...................CAUGCCAGGUCCUAGCUU..................................................... len:18 al:25
...................CAUGCCAGGUCCUAGCgU..................................................... len:18 al:1
...................CAUGCCAGGUuCUAGCUUGAAA................................................. len:22 al:2
...................CAUGuCAGGUCCUAGCUUGAA.................................................. len:21 al:3
...................CAUGCCAGGUCCUAGu....................................................... len:16 al:1
...................CAUGuCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAaCUUGA................................................... len:20 al:14
...................CAUGCCAGGUCCUAGCUUaA................................................... len:20 al:6
...................uAUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:70
...................CAUGCCAGGUCCUAaCUUGAAAA................................................ len:23 al:1
...................aAUGCCAGGUCCUAGCUUGA................................................... len:20 al:2
...................CAUGCCgGGUCCUAGCUUGAA.................................................. len:21 al:32
...................CAUGCCAGGUCCUAGCUcGAA.................................................. len:21 al:2
...................CcUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:2
...................CAUGCCAGGUCCUAGCUcGAAA................................................. len:22 al:3
...................CAUGCCuGGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCuAGGUCCUAGCUU..................................................... len:18 al:1
...................CcUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAAAc................................................ len:23 al:13
...................CAUGCCAGGUCCUAGCUUGAAAuU............................................... len:24 al:2
...................CAUGCCAGGUCCUgGCUU..................................................... len:18 al:1
...................CAUGCCAGGUCCUAGCUUa.................................................... len:19 al:15
...................CAcGCCAGGUCCUAGCUUGAA.................................................. len:21 al:8
...................CAUGCCAGGUCCUAGCUUGAAAAcU.............................................. len:25 al:2
...................CAUGCCAGGUCCaAGCUUGA................................................... len:20 al:2
...................uAUGCCAGGUCCUAGCUUG.................................................... len:19 al:7
...................CAUGCCAGGUCCUAGCUUGAAg................................................. len:22 al:20
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUc......................................... len:30 al:2
...................aAUGCCAGGUCCUAGCUUGAAAA................................................ len:23 al:1
...................CAUGCCAGGUCCUAGCUUGu................................................... len:20 al:14
...................CAUGCCAGGUCCUAGuUUGA................................................... len:20 al:1
...................CAUGCCAGGUCCUgGCUUGAA.................................................. len:21 al:4
...................CAUGCCgGGUCCUAGCUUGA................................................... len:20 al:13
...................CAUGCCAGGUCCUAGaUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUc..................................................... len:18 al:2
...................gAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:816
...................CAaGCCAGGUCCUAGCUUGAA.................................................. len:21 al:1
...................uAUGCCAGGUCCUAGCUUGAAAA................................................ len:23 al:2
...................aAUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:9
...................CAUGCCAGGUCCUAGCUUGAgA................................................. len:22 al:6
...................CAUGCCAGGUCCcAGCUUGAAA................................................. len:22 al:3
...................CAUGCCAGGUaCUAGCUUGAA.................................................. len:21 al:1
...................CAUaCCAGGUCCUAGCUUGAAA................................................. len:22 al:3
...................CAUGCCAGGUCCUAGCaU..................................................... len:18 al:2
...................CAUGCCAGGUCCUAGCUcGA................................................... len:20 al:3
...................CAUGCCAGGcCCUAGCUUGA................................................... len:20 al:2
...................CAUGCCAGGUCCUAGCUUGAAAu................................................ len:23 al:35
...................uAUGCCAGGUCCUAGCUUGA................................................... len:20 al:57
...................CAcGCCAGGUCCUAGCUUGA................................................... len:20 al:1
...................CAcGCCAGGUCCUAGCUUG.................................................... len:19 al:1
...................CuUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:3
...................CuUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGaU......................................... len:30 al:1
...................CAUGCCAGGUCCUAGCUUGAAu................................................. len:22 al:94
...................CAUGCCAGGUCCUAGCUUGAu.................................................. len:21 al:16
...................uAUGCCAGGUCCUAGCUU..................................................... len:18 al:2
...................CAUGCCAGGUCCUAGCUUGAc.................................................. len:21 al:1
...................CAUGCCAGGUCCUAaCUUGAAA................................................. len:22 al:26
...................CAUGCCAGGUCCUAGCUUGAAc................................................. len:22 al:17
...................CAUGCCAGGUCCUuGCUUGAAA................................................. len:22 al:1
...................aAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:8
...................CAUGCCgGGUCCUAGCUU..................................................... len:18 al:1
...................CAUGCCAGGUCCUgGCUUGAAA................................................. len:22 al:2
...................CAUGCCAGGUCCcAGCUUGA................................................... len:20 al:2
...................CAUGCCAGGUCCUAGCUUGAAAA................................................ len:23 al:4
...................CAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:835
...................CAUGCCAGGUCCUAGCUUGAAAgU............................................... len:24 al:1
...................CAUGCuAGGUCCUAGCUUGAA.................................................. len:21 al:3
...................CAUGCCAGGUCCUAGCUUGuA.................................................. len:21 al:1
...................aAUGCCAGGUCCUAGCUUG.................................................... len:19 al:2
...................CgUGCCAGGUCCUAGCUUGAA.................................................. len:21 al:5
...................CAUGCCAGGUCCUAGuUUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCcUGAAA................................................. len:22 al:4
...................CAUGCCAGGUCuUAGCUUGAA.................................................. len:21 al:4
...................CAUGCCAGGUCCUAGCUUG.................................................... len:19 al:54
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGa.......................................... len:29 al:1
...................CAUGCCAaGUCCUAGCUUGA................................................... len:20 al:1
...................CAUGCCAGGUCCcAGCUUGAA.................................................. len:21 al:3
...................CAUGCCAGGUCCUAGCUUGAuA................................................. len:22 al:1
...................CAUGCCAGGcCCUAGCUUGAAA................................................. len:22 al:2
...................CAUGCCAGGUCCUAGCUg..................................................... len:18 al:4
...................CAUGCCAGGUCCUAGCUUGgAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGcU......................................... len:30 al:1
...................uAUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:131
...................CAUGCCAGGUCCUAGCUUGgA.................................................. len:21 al:1
...................CgUGCCAGGUCCUAGCUUGAAA................................................. len:22 al:6
...................CAUGCCAGGUCCUAGCgUGAAA................................................. len:22 al:1
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGU.......................................... len:29 al:2
...................CAUGCCAGGUCCUAGCcUGAA.................................................. len:21 al:1
...................CAUGCCAGGUCCUAGCUUGAAuA................................................ len:23 al:6
...................CAUGCCAGGUCCUAGCUUGA................................................... len:20 al:347
...................CAaGCCAGGUCCUAGCUUGAAA................................................. len:22 al:3
...................CAUGCCAGGUCCUAGCUUGAAAAUUGUGUUa........................................ len:31 al:2
...................CAUGCCAGGUCCUAGCUUGAAAg................................................ len:23 al:7
...................CAUGCCAGGUCCUAGCUUu.................................................... len:19 al:3
...................CAUGCCAGGUCCUAGCUUGg................................................... len:20 al:8
....................AUGCCAGGUCCUAGCUUGAAAAUUGUGUUC........................................ len:30 al:1
....................AUGCCAGGUCCUAGCUUGAAA................................................. len:21 al:4
....................AUGCCAGGUCCUAGCUUGAA.................................................. len:20 al:6
....................AUGCCgGGUCCUAGCUUGAA.................................................. len:20 al:2
....................AUGCCAGGUCCUAGCUUGA................................................... len:19 al:4
.....................UGCCAGGUCCUAGCUUGAAA................................................. len:20 al:7
.....................UGCCAGGUCCUAGCUUGAAAAUUGUGUUCA....................................... len:30 al:3
.....................cGCCAGGUCCUAGCUUGA................................................... len:18 al:1
.....................UGCCAGGUCCUAGCUUGAAAAUUGUGUUC........................................ len:29 al:1
.....................UGCCAGGUCCUAGCUUGAA.................................................. len:19 al:9
.....................UGCCAGGUCCUAGCUUGu................................................... len:18 al:1
.....................UGCCAGGUCCUAGCUUGAAAu................................................ len:21 al:2
.....................UaCCAGGUCCUAGCUUGAA.................................................. len:19 al:1
.....................UGCCAGGUCCUAGCUUGAAAcU............................................... len:22 al:1
.....................UGCCAGGUCCUAGCUUGAAAAUUGUGUcC........................................ len:29 al:1
.....................UGCCAGGUCCUAGCUUGAAu................................................. len:20 al:10
.....................UGCCAGGUCCUAGCUUGA................................................... len:18 al:9
...........................................UGUGUUCAGGUUAGGAGCAUGGUAUAGA................... len:28 al:1
.............................................UGUUCAGGUUgGGAGCAUGGUAU...................... len:23 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUAUAG.................... len:25 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUAUAGA................... len:26 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUAU...................... len:23 al:5
.............................................UGUUCAGGUUAGGAGCAUGGUAUAGAu.................. len:27 al:1
.............................................UGUUCAGGUUAGGAGCAUGGUA....................... len:22 al:1
..............................................GUUCAGGUUAGGAGCAUGGUAUAG.................... len:24 al:2
..............................................GUUCAGGUUAGGAGCAUGGUAUAGA................... len:25 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAGA................... len:24 al:29
...............................................UUCAGGUUAGGAGCAUGGUAa...................... len:21 al:2
...............................................cUCAGGUUAGGAGCAUGGUAUAGA................... len:24 al:4
...............................................UUCAGGUUAGGAGCAUGGcAUAGA................... len:24 al:1
...............................................UUCAGGUUAGGAGCAUGGUAc...................... len:21 al:6
...............................................cUCAGGUUAGGAGCAUGGUAU...................... len:21 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAG.................... len:23 al:2
...............................................UUCAGGUUAGGAGCAUGGU........................ len:19 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAGc................... len:24 al:2
...............................................UUCAGGUUAGGAGCAUGGUAUAGAu.................. len:25 al:1
...............................................UUCAGGUUAGGAGCAUGGUgU...................... len:21 al:1
...............................................UUCAGGcUAGGAGCAUGGUAU...................... len:21 al:1
...............................................UUCAGGUUAGGAGCAUGGUAU...................... len:21 al:4
...............................................UUCAGGUUAGGAGCAUGGUAUAc.................... len:23 al:1
...............................................UUCAGGUUAGGAGCAUGGUAUAa.................... len:23 al:1
................................................aCAGGUUAGGAGCAUGGUAUAG.................... len:22 al:16
................................................UCAGGUUAGGAGCAUGGUAUAGAg.................. len:24 al:18
................................................UCAGGUUcGGAGCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGc........................ len:18 al:58
................................................UaAGGUUAGGAGCAUGGUAUAGA................... len:23 al:5
................................................UCAGGUUAuGAGCAUGGUAUAGA................... len:23 al:2
................................................UCAGGUUAGGAGCAUGuUAUAGA................... len:23 al:2
................................................UCAGGUUAGGAGCAUGGUu....................... len:19 al:1
................................................UCAGGUcAGGAGCAUGGUAUAGA................... len:23 al:23
................................................UCAGGUUAGGAaCAUGGUAUAG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAAc................. len:25 al:2
................................................UCAGGUUAGGAGuAUGGUAUAGA................... len:23 al:28
................................................UCAGGUUAGGAGCAUGGUAUu..................... len:21 al:7
................................................UCAGGUUAGGAGCAcGGUAU...................... len:20 al:19
................................................UCAuGUUAGGAGCAUGGUAUAG.................... len:22 al:1
................................................gCAGGUUAGGAGCAUGGUAU...................... len:20 al:3
................................................UCAGcUUAGGAGCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAaGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCAUGaUAUAGA................... len:23 al:6
................................................UCAGGUUAGGAGCAUGGUAU...................... len:20 al:6865
................................................UCAGGUcAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAcGGUAUAG.................... len:22 al:6
................................................UCAGGUUAGGAGCAUGGUcUAG.................... len:22 al:4
................................................UCAGGUUAGGAGCAaGGUA....................... len:19 al:1
................................................UCAGGUUAGaAGCAUGGU........................ len:18 al:1
................................................gCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:3
................................................UCgGGUUAGGAGCAUGGUAUAGA................... len:23 al:43
................................................UCAGGUUAGGAGCAUGaU........................ len:18 al:16
................................................UCAGGUUAGGAGCAUGGcA....................... len:19 al:5
................................................UgAGGUUAGGAGCAUGGUAU...................... len:20 al:1
................................................cCAGGUUAGGAGCAUGGUAUAG.................... len:22 al:24
................................................UCAGGUUAGGAGCAUGGcAU...................... len:20 al:26
................................................UCAGGUUAGGAGCAUGGcAUAG.................... len:22 al:2
................................................UCAGGUUAGGAuCAUGGUAU...................... len:20 al:3
................................................UCAGGUUAGGAGCAUGGUAUAc.................... len:22 al:61
................................................UuAGGUUAGGAGCAUGGUAU...................... len:20 al:7
................................................UCAGGUUAGGAGCAUGGUgUAG.................... len:22 al:6
................................................UCAGGUUAGGAGaAUGGUAUAGA................... len:23 al:1
................................................UuAGGUUAGGAGCAUGGUAUAGA................... len:23 al:13
................................................UCAGGUUAGGAGCAUGcUAU...................... len:20 al:6
................................................UCAGGUUAGGAGCAUGGUAUAuA................... len:23 al:5
................................................UCAGGUUAGGAGCAUGGUAUA..................... len:21 al:88
................................................UCAGGUUAGGAGCAUGGUgUAGA................... len:23 al:17
................................................cCAGGUUAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUuGU........................ len:18 al:2
................................................UCAGGUUAGGAGCAUuGUAUAGA................... len:23 al:4
................................................UCgGGUUAGGAGCAUGGUA....................... len:19 al:1
................................................UaAGGUUAGGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCAUGGcAUAGA................... len:23 al:15
................................................UCuGGUUAGGAGCAUGGUAUAG.................... len:22 al:2
................................................UCAGGcUAGGAGCAUGGUAU...................... len:20 al:13
................................................UCAGGUUgGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUGGU........................ len:18 al:317
................................................UCAGGUUAGGAGCAaGGUAU...................... len:20 al:3
................................................UCAGGUUAGGAGCAUGaUA....................... len:19 al:3
................................................UCAGGUUAGGgGCAUGGUAUAG.................... len:22 al:13
................................................UCgGGUUAGGAGCAUGGUAU...................... len:20 al:28
................................................UCAGGaUAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUG.......................... len:16 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAAu................. len:25 al:11
................................................UCAGGUUuGGAGCAUGGUAU...................... len:20 al:5
................................................UCcGGUUAGGAGCAUGGUAUAG.................... len:22 al:2
................................................UCAGGUUAGGAcCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:155
................................................UCAGGUaAGGAGCAUGGUAU...................... len:20 al:1
................................................aCAGGUUAGGAGCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGUA....................... len:19 al:84
................................................UCAGGUUAGGAGCAUGGaA....................... len:19 al:2
................................................UCAGGUUAGGAGCAUGGUAUAGc................... len:23 al:139
................................................UCAGGUUAGGAGCAcGGUAUA..................... len:21 al:1
................................................cCAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:3
................................................UCAGGUUAGGgGCAUGGUAUAGA................... len:23 al:48
................................................UCAGGUUAGGAGCAUaGUAUAG.................... len:22 al:3
................................................UCAGGUUAGGAGCAUGGUAa...................... len:20 al:429
................................................UCAGGUUAGGAGCAUGGUAUAGAAAa................ len:26 al:1
................................................aCAGGUUAGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGgGCAUGGUAU...................... len:20 al:25
................................................UCAGGUUcGGAGCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUAGaAGCAUGGUAUAG.................... len:22 al:1
................................................UCcGGUUAGGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCuUGGUAU...................... len:20 al:3
................................................UCAGGUUAGGAGuAUGGUA....................... len:19 al:2
................................................UCAuGUUAGGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCAcGGUAUAGA................... len:23 al:29
................................................UCAGGUUAGGAGaAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGAaCAUGGUAUA..................... len:21 al:1
................................................UCAGGUUgGGAGCAUGGUAUAGA................... len:23 al:35
................................................UCAGGUUAGGAGCAaGGUAUAG.................... len:22 al:5
................................................cCAGGUUAGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAuA................. len:25 al:82
................................................UCAGGUUAGGAGuAUGGUAUAG.................... len:22 al:5
................................................UCAGGUUAGGAGCAUGGUuU...................... len:20 al:6
................................................UCAGGUUAGGAGCAUGGUgUAGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCAUGGUAUc..................... len:21 al:1
................................................UCAuGUUAGGAGCAUGGUAUAGA................... len:23 al:3
................................................UCAGGUUAGGAGCAUGGUcU...................... len:20 al:1
................................................UCAGGUUAGGAGCAUGGa........................ len:18 al:22
................................................UCAGGUUAGGAGCAUGGUAUAG.................... len:22 al:2536
................................................UCAGGUUAGGAGaAUGGUAUAG.................... len:22 al:1
................................................UCAGGUUcGGAGCAUGGUAUAGA................... len:23 al:2
................................................UCAGGUUAGGAGCAUGGUAUAGAAA................. len:25 al:9
................................................UCAGGUUAGGAGCAUGuUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCAUGGUAUgGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCAUGGUAUcG.................... len:22 al:23
................................................UCAGGUUgGGAGCAUGGUA....................... len:19 al:1
................................................UCuGGUUAGGAGCAUGGUAUAGA................... len:23 al:4
................................................UCAGGUUAGGAGCAUGGUAUAGg................... len:23 al:277
................................................UCAGGUUAaGAGCAUGGUAUAGA................... len:23 al:1
................................................cCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:105
................................................UCAGGUgAGGAGCAUGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGuAA................. len:25 al:1
................................................UCAGGUUAGGAaCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGUAc...................... len:20 al:1488
................................................UCAaGUUAGGAGCAUGGUAU...................... len:20 al:5
................................................UCAGGUUAuGAGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAu.................. len:24 al:353
................................................UCAGGUUAGGAGCAUGGUAaAGA................... len:23 al:2
................................................UCAGGUUAGGAGCuUGGUAUAGA................... len:23 al:3
................................................UCAGGcUAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUcGUAUAGA................... len:23 al:1
................................................UCAGGUUAGcAGCAUGGUAUAGA................... len:23 al:1
................................................UCgGGUUAGGAGCAUGGUAUAG.................... len:22 al:8
................................................UCAGGUUgGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCuUGGUAUAG.................... len:22 al:1
................................................UCAGGUUAGGAGuAUGGUAU...................... len:20 al:10
................................................UCAGGUUAGGAGCAUGGUAUAGAc.................. len:24 al:81
................................................UCAGGUUAGGAGCAUGGaAU...................... len:20 al:2
................................................UCAGGUUAGGAaCAUGGUAUAGA................... len:23 al:8
................................................UCAGGUUAGGAGCAUGGUAgA..................... len:21 al:5
................................................UCAGGUUAGGAGCAUGGgAU...................... len:20 al:3
................................................UCAGGUUAGGAGCAUGGUAg...................... len:20 al:372
................................................UCAGGUUAGGAGCAUGGUAUuGA................... len:23 al:3
................................................UgAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGUUAGGuGCAUGGUAUAGA................... len:23 al:6
................................................UCAGGUUAGGAGCAUGGUAcAGA................... len:23 al:8
................................................UCAGGUUuGGAGCAUGGUAUAGA................... len:23 al:2
................................................UgAGGUUAGGAGCAUGGUAUAG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUaGUAUAGA................... len:23 al:6
................................................UCAGaUUAGGAGCAUGGUAUAGA................... len:23 al:3
................................................UCAGGUUAGaAGCAUGGUAUAGA................... len:23 al:13
................................................UCgGGUUAGGAGCAUGGU........................ len:18 al:4
................................................UCAGGUUAGGAGCAUGGUAUAGu................... len:23 al:846
................................................UCAGGUUAGGAGCgUGGUAUAG.................... len:22 al:11
................................................UCAGGUUgGGAGCAUGGUAUAG.................... len:22 al:9
................................................UCAGGUUAGGAGCAUGGg........................ len:18 al:31
................................................UCAGGcUAGGAGCAUGGUAUAGA................... len:23 al:30
................................................UCAGGUcAGGAGCAUGGUAUAG.................... len:22 al:6
................................................UCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:11353
................................................UCAGGUUAGGAGCAUGGgA....................... len:19 al:1
................................................UCAGGUUAGGAGCAUGGUAgAG.................... len:22 al:1
................................................UCuGGUUAGGAGCAUGGUAU...................... len:20 al:1
................................................aCAGGUUAGGAGCAUGGUAUAGA................... len:23 al:73
................................................UCAGGcUAGGAGCAUGGUAUAG.................... len:22 al:3
................................................UCAGGUUAGGAGCgUGGUAU...................... len:20 al:17
................................................UCAGGaUAGGAGCAUGGUAUAGA................... len:23 al:2
................................................UCAaGUUAGGAGCAUGGU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGcA.................. len:24 al:1
................................................UCAGGUUAGGAGCAgGGUAUAGA................... len:23 al:1
................................................UCAGGUUAGGgGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGUUAGGAGCAUGGUAUgG.................... len:22 al:18
................................................UCAGGUUgGGAGCAUGGUAU...................... len:20 al:23
................................................UCAGGUUAGGAGCAUGcU........................ len:18 al:2
................................................UCAGGUUAGGAGCAUGGUAUcGA................... len:23 al:3
................................................UCAGGUUAGuAGCAUGGUAUAG.................... len:22 al:1
................................................aCAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGaUAGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................aCAGGUUAGGAGCAUGGUAU...................... len:20 al:31
................................................UCAGaUUAGGAGCAUGGUAUAG.................... len:22 al:1
................................................UCAGGgUAGGAGCAUGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGUg....................... len:19 al:1
................................................UCAGGUUAGGAGCAaGGUAUAGA................... len:23 al:3
................................................UuAGGUUAGGAGCAUGGUAUAG.................... len:22 al:3
................................................UCAGGUUAGGAuCAUGGUAUAGA................... len:23 al:4
................................................UCAGGUUAGGAGCAUGGaAUAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAUGGUAUAcA................... len:23 al:3
................................................UCAGaUUAGGAGCAUGGUA....................... len:19 al:1
................................................UCAGGUUAGGcGCAUGGUAUA..................... len:21 al:1
................................................gCAGGUUAGGAGCAUGGUAUAGAA.................. len:24 al:1
................................................UCAGGUcAGGAGCAUGGUAUAGAA.................. len:24 al:2
................................................UCAGGUUAGGAGCAUGaUAUAG.................... len:22 al:2
................................................UCAGGUUAGGAGCAUGGUAUAaA................... len:23 al:30
................................................UCAGGUUAGGAGCAUGGUAUAGAcA................. len:25 al:1
................................................UCAGGUUAGGAGCAUGGUAUAa.................... len:22 al:375
................................................UCAGGUUAGGAGCAUGGUuUAGA................... len:23 al:2
................................................cCAGGUUAGGAGCAUGGUAU...................... len:20 al:68
................................................UCAGaUUAGGAGCAUGGUAU...................... len:20 al:3
................................................UCAGGUUAGGAGCAUGGUAUgGA................... len:23 al:93
................................................UCAGGUUAGGAGCAUGuU........................ len:18 al:1
................................................UCAGGUUAGGAGCAUaGUAU...................... len:20 al:5
................................................UCAGGUUAGGAGCAUGGUAcAG.................... len:22 al:3
................................................UCAGGUUAGGAGCAUGGUuUAG.................... len:22 al:1
................................................UCAGGUUAGGAGCAUGGUgU...................... len:20 al:282
................................................UCAGGUUAGGAGCAgGGUAU...................... len:20 al:2
................................................UCAGGUUAGGAGCAUGGUgUA..................... len:21 al:1
................................................UCAGGUUAGGAGCAUGGUAUAGAgA................. len:25 al:2
................................................UCAGGUcAGGAGCAUGGUAU...................... len:20 al:6
................................................cCAGGUUAGGAGCAUGGUAUA..................... len:21 al:2
................................................UCAaGUUAGGAGCAUGGUAUAGA................... len:23 al:7
................................................UgAGGUUAGGAGCAUGGUAUAGA................... len:23 al:4
................................................UCAGGUUAGGAGCAUGaUAU...................... len:20 al:23
................................................UCAGGUUAGGAGCAUGGUAUAu.................... len:22 al:62
................................................UCAGGUUAGGAGCAUGGUAgAGA................... len:23 al:1
................................................UCAGGUUAGGAGCAcGGU........................ len:18 al:3
................................................UCAGGUUAGGuGCAUGGUAU...................... len:20 al:1
................................................UCAGGUUAGGAGCgUGGUAUAGA................... len:23 al:29
................................................UCAGGgUAGGAGCAUGGUAUAGA................... len:23 al:3
.................................................CAGGUUAGGAGCAUGGUAUgGA................... len:22 al:1
.................................................CAGGUUAGGAGCAUGGUAc...................... len:19 al:8
.................................................CAGGUUAGGAGCAUGGUAa...................... len:19 al:2
.................................................CAGGUUAGGAGCAUGGUAUAGu................... len:22 al:1
.................................................CAGGUUAGGAGCAUGGUAUAGA................... len:22 al:41
.................................................CAGGUUAGaAGCAUGGUAUAGA................... len:22 al:1
.................................................CAGGUUAGGAGCAUGGUAUAGg................... len:22 al:1
.................................................CAGGUUAGGAGCAUGGUgU...................... len:19 al:1
.................................................CAGGUUAGGAGCAUGGUAUAGAu.................. len:23 al:7
.................................................CAGGUUAGGAGCAUGGUAUAc.................... len:21 al:2
.................................................CAGGUUAGGAGCAUGGUAU...................... len:19 al:20
.................................................CAGGUUAGGAGCAUGGUAUAG.................... len:21 al:13
.................................................CAGGUUAGGAGCAUGGUuUAGA................... len:22 al:1
.................................................CAGGUUAGGAGCAUGGUAUAu.................... len:21 al:1
.................................................CAGGUUAGGAGCAUGGUAUAa.................... len:21 al:3
..................................................AGGUUAGGAGCAUGGUAUAGu................... len:21 al:2
..................................................AGGUUAGGAGCAUGGUAa...................... len:18 al:1
..................................................AGGUUAGGAGCAUGGUAU...................... len:18 al:2
..................................................AGGUUAGGAGCAUGGUAUAGA................... len:21 al:9
..................................................AGGUUAGGAGCAUGGUAUAG.................... len:20 al:2
....................................................GUUAGGAGCAUGGUAUAGAu.................. len:20 al:1
.....................................................UUAGGAGCAUGGUAUAGA................... len:18 al:3