Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000005:10385497-10385597 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_1938.ps.pdf
Locus Name: Cluster_1938
CACUUAGACUAUUCUCAUUUCAUCAGGGAUUGUGGUGAGUUAGUUGUUUUAUUUGCAACCAGCUCAUAUCAGUACCUGCUAAAAUUUGAAUAAAUAUUCAC
.........(((((..((((...((((.((((..(((((((.(((((.......))))).)))))))..)))).))))...))))..)))))......... (-26.70)
.ACUUuGACUAUUCUCAUUUCA............................................................................... len:21 al:1
..CUUuGACUAUUCUCAUUUCA............................................................................... len:20 al:3
..........AUUCUCAUUUCAUCAGGGAUUGUGGU................................................................. len:26 al:1
..................UcCAUCAGGGAUUGUGGUGA............................................................... len:20 al:1
..................UUCAUCAGGGAUUGUGGUGAGUUAGU......................................................... len:26 al:1
.....................cUCAGGGAUUGUGGUGAGUUAGU......................................................... len:23 al:1
.....................cUCAGGGAUUGUGGUGAGUUA........................................................... len:21 al:3
.....................cUCAGGGAUUGUGGUGAGUUAGUU........................................................ len:24 al:1
......................UCAGGGAUUGUGcUGAGUUAGUU........................................................ len:23 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUaU...................................................... len:25 al:53
......................UCAGGGAUUGUGGUGAGgU............................................................ len:19 al:252
......................aCAGGGAUUGUGGUGAGU............................................................. len:18 al:2
......................UCAGGGAUUGUGuUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGuGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGcGUUAGUU........................................................ len:23 al:5
......................UCgGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:37
......................UCAGGGAUUGUGGUGAGUUAGUUa....................................................... len:24 al:2457
......................UCAGGGAUUGUGGUGAGUUAGa......................................................... len:22 al:205
......................UCAGGuAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAcU............................................................. len:18 al:2
......................UCAGGGAUUGgGGUGAGUUAGUU........................................................ len:23 al:6
......................UCAGGGAUUGUGGaGAGUUAGUU........................................................ len:23 al:5
......................UCAGGGAUUGUGGUuAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAUUGUGGUGAGUUAGUUGa...................................................... len:25 al:9
......................UCgGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAUUaUGGUGAGUUAGU......................................................... len:22 al:3
......................UCAGGGAUaGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUUu........................................................... len:20 al:5
......................UCAGGGAUUGUGGUGAGUaA........................................................... len:20 al:1
......................gCAGGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAcUUAGUU........................................................ len:23 al:1
......................UCAGGGAUUGUGGUGAGUUgG.......................................................... len:21 al:32
......................UCAGGGAUUGUGGUGAGUUAcUU........................................................ len:23 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUu....................................................... len:24 al:1171
......................UCAGGGAUUGUGuUGAGUUAGUU........................................................ len:23 al:8
......................UCAGGGAUUGUGGUGAGUUAa.......................................................... len:21 al:138
......................UCAGGGgUUGUGGUGAGUU............................................................ len:19 al:13
......................UCAGGGAUUGUGuUGAGU............................................................. len:18 al:1
......................UCAGcGAUUGUGGUGAGUUAGUU........................................................ len:23 al:1
......................UCAGGGAUUGUGGUGAaUUAGUU........................................................ len:23 al:8
......................UCAGGGAUUGUGGUGAuUU............................................................ len:19 al:1
......................UCAGGGAgUGUGGUGAGUU............................................................ len:19 al:1
......................UgAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:3
......................UCAGGGAUUGUGGUGgGU............................................................. len:18 al:3
......................UCAGGGAUUGUGGUGgGUUAGUU........................................................ len:23 al:93
......................UCAGGGAUUGUGGUGAGUUAGUUaUU..................................................... len:26 al:4
......................cCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:54
......................UCAGGGAUUGUuGUGAGUUAGUU........................................................ len:23 al:4
......................UCcGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:2
......................UaAGGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUcGUGAGUUAGUU........................................................ len:23 al:2
......................UCAGGGAUUGUGaUGAGUUAGUU........................................................ len:23 al:14
......................UCAGGGAUUGUGGUGAGaU............................................................ len:19 al:65
......................UCAGGGcUUGUGGUGAGUUAGUU........................................................ len:23 al:2
......................UCAGGGAUcGUGGUGAGUUA........................................................... len:20 al:1
......................UgAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:4
......................UCAGGGAUUGaGGUGAGUUAGUU........................................................ len:23 al:7
......................UCAGGGAaUGUGGUGAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAcUGUGGUGAGUUAGUU........................................................ len:23 al:46
......................UCAGGGAUUGUGGUGAGUUuG.......................................................... len:21 al:1
......................UCAGGGAUgGUGGUGAGUUAGUU........................................................ len:23 al:4
......................UCAGGGAcUGUGGUGAGUUAG.......................................................... len:21 al:4
......................UCAGGGAUUGUGGUGAGUUgGUUG....................................................... len:24 al:4
......................UCAGGGAUUGUGGUGAGc............................................................. len:18 al:45
......................UCAGGGAUUGcGGUGAGUUAGUU........................................................ len:23 al:63
......................UCAGGGAUcGUGGUGAGUUAGUU........................................................ len:23 al:62
......................UCAGGGAUUGUGGUGAGgUAGU......................................................... len:22 al:2
......................UCAaGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:9
......................UCAGGGAUcGUGGUGAGUUAGU......................................................... len:22 al:14
......................UCAGGGAUUGUGGUGAGaUA........................................................... len:20 al:5
......................UCAGGGAcUGUGGUGAGUU............................................................ len:19 al:14
......................UuAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:17
......................UCAGGGAUUGUGGUGAGUUAGUUGUUU.................................................... len:27 al:1
......................UCAGGGuUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUUAu.......................................................... len:21 al:16
......................UCAGGGAUUGUGGcGAGUUAG.......................................................... len:21 al:5
......................UCAGGGAUUGUGGUGAuUUAGUU........................................................ len:23 al:2
......................UCAGGGAUUGUGGUGAGUUAGg......................................................... len:22 al:355
......................UCAGuGAUUGUGGUGAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGAGUg............................................................ len:19 al:346
......................UCAGGGAUcGUGGUGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGUuAGUU............................................................ len:19 al:3
......................cCAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:10
......................UCAGGGAcUGUGGUGAGUUAGU......................................................... len:22 al:16
......................UaAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:3
......................UCAGGGAUUGUGGUGAGUUAGUgG....................................................... len:24 al:2
......................UCAGGaAUUGUGGUGAGUUAGU......................................................... len:22 al:10
......................UCAGGGAUUGUGGaGAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUc................................................... len:28 al:1
......................UCAGGGAUUGUGGUGAGUUg........................................................... len:20 al:6
......................UCAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:1055
......................UCAGGGAUUGUGGUGuGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUG................................................................ len:15 al:11
......................UCAGGGAUUGUGGUGAGUUuGU......................................................... len:22 al:262
......................cCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:228
......................UCAaGGAUUGUGGUGAGUU............................................................ len:19 al:11
......................UCAGGGAUUGUGGUaAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGuGUU............................................................ len:19 al:3
......................UCcGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:1
......................UuAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:29
......................UCAGGGAUUGaGGUGAGUU............................................................ len:19 al:3
......................UCAGGGAUUaUGGUGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGUGAGUa............................................................ len:19 al:751
......................UCAGGGAUUGUGGUGAGa............................................................. len:18 al:32
......................UCAGGGAUaGUGGUGAGUUAGUU........................................................ len:23 al:8
......................UCAGGGuUUGUGGUGAGUUAGU......................................................... len:22 al:1
......................gCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:1
......................UCAGGGAUUGUGGUGgGUUAG.......................................................... len:21 al:1
......................aCAGGGAUUGUGGUGAGUU............................................................ len:19 al:45
......................UCAGGGAUUGUGGcGAGUU............................................................ len:19 al:22
......................UCAGGuAUUGUGGUGAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAUUGUGGUGAGUUAaUU........................................................ len:23 al:2
......................UCAGGGAUUGUGGUGAGUUcGUU........................................................ len:23 al:3
......................UCAGGGAUUGUGGUGAGUcA........................................................... len:20 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUGg...................................................... len:25 al:1
......................UCAGGGAUUGcGGUGAGUUAGU......................................................... len:22 al:17
......................UCAGGGAUUGUGGUGAGUUAGUc........................................................ len:23 al:4818
......................UCAGGGAUUGUGGcGAGUUAGUU........................................................ len:23 al:52
......................UCgGGGAUUGUGGUGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGGUGAGUUuGUU........................................................ len:23 al:7
......................UCAGaGAUUGUGGUGAGUU............................................................ len:19 al:4
......................UCAGGGAUUGUGGUGAGUaAG.......................................................... len:21 al:1
......................UCAGGGAUaGUGGUGAGUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGAGUUAGcU........................................................ len:23 al:215
......................UCAGGGAUUGUGGUaAGUUA........................................................... len:20 al:1
......................UCAcGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGaUGAGUUAGU......................................................... len:22 al:6
......................UCAGGGAUUGUGGUGgGUU............................................................ len:19 al:29
......................aCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:42
......................UCAGGGgUUGUGGUGAGUUAGUUG....................................................... len:24 al:3
......................UCcGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:8
......................UCAGGGAUUGUGGUGAaU............................................................. len:18 al:3
......................UCAGGGAUcGUGGUGAGUU............................................................ len:19 al:18
......................UCAGGGAUUGUGGUGAGUUAGc......................................................... len:22 al:1550
......................UCAGGGgUUGUGGUGAGUUAGU......................................................... len:22 al:28
......................UuAGGGAUUGUGGUGAGUU............................................................ len:19 al:11
......................UCcGGGAUUGUGGUGAGUU............................................................ len:19 al:3
......................UCAGGGAUUGUGGUGAGUUAuUU........................................................ len:23 al:5
......................UCAGuGAUUGUGGUGAGUUAGUU........................................................ len:23 al:1
......................UCAGGGAUUGUGGUGAGUUAc.......................................................... len:21 al:37
......................UCAGGGAUUGUuGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUcGUGGUGAGUUAG.......................................................... len:21 al:8
......................UCAGGGAUUGUGGUGAGUUcG.......................................................... len:21 al:5
......................UCAGGGAUUGaGGUGAGUUAGU......................................................... len:22 al:3
......................cCAGGGAUUGUGGUGAGUUAGUUGUU..................................................... len:26 al:1
......................UCAGGGAUUGUGGUGAGg............................................................. len:18 al:14
......................aCAGGGAUUGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................UCAGGGAUUGUuGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUGAGU............................................................. len:18 al:172
......................UCAGGGuUUGUGGUGAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAUUGUGGaGAGUU............................................................ len:19 al:3
......................UCAGGaAUUGUGGUGAGUUAG.......................................................... len:21 al:1
......................UCAGGaAUUGUGGUGAGUU............................................................ len:19 al:2
......................UCAGGGAUUGUGGUGgGUUAGU......................................................... len:22 al:30
......................UCAGGGAUUGUGGUGAGUUgGU......................................................... len:22 al:145
......................UCAGGGAUUGUGGUGAGUUAGUUuUU..................................................... len:26 al:5
......................UCAGGGgUUGUGGUGAGUUAGUU........................................................ len:23 al:44
......................UCAGGGAUUGUGGUGAGgUAGUU........................................................ len:23 al:4
......................UCAGGGAgUGUGGUGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGAaUUAGU......................................................... len:22 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUUAUU................................................ len:31 al:1
......................UCAGGGAUUGUGGUGAGUUAGgU........................................................ len:23 al:628
......................UCuGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:6
......................UCAGGGAUUGUaGUGAGUUAGU......................................................... len:22 al:7
......................UCAGGGAcUGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................UCgGGGAUUGUGGUGAGUU............................................................ len:19 al:24
......................UCAGGGAUUGUGGgGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUgAGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGAaUU............................................................ len:19 al:2
......................UCAGGGAUUGUaGUGAGUU............................................................ len:19 al:8
......................UCAGGGAUUGUuGUGAGUUAGU......................................................... len:22 al:3
......................UCAGGGAUUGUGGUGAGUUAGUUGU...................................................... len:25 al:4
......................UCAGGGAUUaUGGUGAGUU............................................................ len:19 al:7
......................UCAGGGgUUGUGGUGAGU............................................................. len:18 al:1
......................UCAGuGAUUGUGGUGAGUU............................................................ len:19 al:2
......................UCAGGGAUUGUGGUGAGUUA........................................................... len:20 al:147
......................UCAGGGAUUGUGGUGAGUUAGUg........................................................ len:23 al:711
......................UCAGGGAUUGUGGUaAGUU............................................................ len:19 al:7
......................aCAGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:16
......................UCAaGGAUUGUGGUGAGUUAGU......................................................... len:22 al:6
......................UCAGGGAUUGUGGUGAGUc............................................................ len:19 al:1564
......................UCAGGGAUUGUGGUGAGUcAGU......................................................... len:22 al:10
......................UCAGGGAUUGUGGUGAGUUAGUa........................................................ len:23 al:1615
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUUAU................................................. len:30 al:1
......................UCAGGGAUUGUGGUGAGUUAuU......................................................... len:22 al:4
......................UCAGGGAUUGUGGgGAGUUAG.......................................................... len:21 al:1
......................UCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:7098
......................UCAGGGAUUGUGGUGAGUcAGUU........................................................ len:23 al:29
......................UCAGGGAUUGUGGUGAGaUAGUU........................................................ len:23 al:1
......................UCAGaGAUUGUGGUGAGUUAGU......................................................... len:22 al:5
......................UCAGGGAUUGUGGUGAGUUAGUUc....................................................... len:24 al:205
......................UCAGGGAUUGUGGUcAGUU............................................................ len:19 al:3
......................UCAGGGAUUGUGGcGAGUUA........................................................... len:20 al:1
......................UCuGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:11
......................UaAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:8
......................UCAGGGAUUGUGGUGAGUUAaU......................................................... len:22 al:48
......................UCAGGGAUgGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUUAGUUGUUUU................................................... len:28 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUG....................................................... len:24 al:96
......................UCAGGGAUUGUGGgGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGUaGUGAGUUAGUU........................................................ len:23 al:18
......................UCAGGGAUUGUGGUGAGUUAGUUGc...................................................... len:25 al:2
......................UCuGGGAUUGUGGUGAGUU............................................................ len:19 al:4
......................UCAGGGAUcGUGGUGAGUUAGUUG....................................................... len:24 al:1
......................cCAGGGAUUGUGGUGAGUUA........................................................... len:20 al:5
......................UCAGGGAUUGUGGUGAGUU............................................................ len:19 al:6338
......................UCAGGGAUUGUGaUGAGUU............................................................ len:19 al:5
......................UCAGaGAUUGUGGUGAGUUAG.......................................................... len:21 al:2
......................UCAGGGAUUGUGGUGAGUUAGUUuU...................................................... len:25 al:38
......................UCAGGGAUUGUGGUGAGUUcGU......................................................... len:22 al:1
......................UCAGGGAUUGUGGUGAGcUA........................................................... len:20 al:1
......................UCAGGGAUUGUGGUGAGUUc........................................................... len:20 al:4
......................cCAGGGAUUGUGGUGAGU............................................................. len:18 al:3
......................gCAGGGAUUGUGGUGAGUUAGU......................................................... len:22 al:1
......................aCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:122
......................UCAuGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:1
......................UCAGaGAUUGUGGUGAGUUAGUU........................................................ len:23 al:12
......................UCAGGGAUUGcGGUGAGUUAG.......................................................... len:21 al:4
......................UCAGGaAUUGUGGUGAGUUAGUU........................................................ len:23 al:16
......................UCAGGGAUUGUGGUGAGUUgGUU........................................................ len:23 al:1045
......................UCAGGGAUUaUGGUGAGUUAGUU........................................................ len:23 al:5
......................UCAGGaAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UCAGGGAUUGUGGUGAGUUAGUcG....................................................... len:24 al:2
......................UCAGGGAUUGUGGUGuGUUAGUU........................................................ len:23 al:16
......................UCAGGGAUUGUGGUGAGcU............................................................ len:19 al:87
......................cCAGGGAUUGUGGUGAGUU............................................................ len:19 al:64
......................UCAGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:21926
......................UuAGGGAUUGUGGUGAGUUA........................................................... len:20 al:1
......................UgAGGGAUUGUGGUGAGUU............................................................ len:19 al:1
......................UCAGGGAUUGUGGUGAGUgAGUU........................................................ len:23 al:5
......................UCAGGGAUUuUGGUGAGUUAGUU........................................................ len:23 al:3
......................UCAGGGAUUGUGGUGAuUUAGU......................................................... len:22 al:1
......................UCAGGGgUUGUGGUGAGUUAG.......................................................... len:21 al:5
......................UCAGGGAgUGUGGUGAGUUAGUU........................................................ len:23 al:6
......................UCAGGGAUUGUGGUGAGUcAG.......................................................... len:21 al:2
......................UCAGGGAUUGUGGUGAGUUAGaU........................................................ len:23 al:74
......................UCAGGGAUUGUGGcGAGUUAGU......................................................... len:22 al:12
......................UCgGGGAUUGUGGUGAGUUAGUU........................................................ len:23 al:80
......................UCAGGGAUUGUGGUaAGUUAGUU........................................................ len:23 al:16
......................UCAGGGAUUGUGGUGAGcUAGU......................................................... len:22 al:8
......................UCAGGGAUUGUGGaGAGU............................................................. len:18 al:1
......................UCAGGGAUUGUGuUGAGUUAGU......................................................... len:22 al:3
......................UCAGGGAUUGUGGUGAGcUAGUU........................................................ len:23 al:45
......................UCAGGGAUUGUGGUGAGUUAcU......................................................... len:22 al:8
......................UCAGGGAUUGgGGUGAGUUAGU......................................................... len:22 al:1
......................UCAGGGAUUGcGGUGAGUU............................................................ len:19 al:23
......................UCAGGGAUUGUGGUGA............................................................... len:16 al:1
......................UCAGGGAUUGUGGgGAGUUAGUU........................................................ len:23 al:2
......................UCgGGGAUUGUGGUGAGUUAG.......................................................... len:21 al:1
.......................CAGGGAUUGUGGUGAGUUAGUU........................................................ len:22 al:79
.......................CAGGGAUUGUGGUGAGUUAGc......................................................... len:21 al:5
.......................CAGGGAUUGUGGUGAGUUAGUg........................................................ len:22 al:4
.......................CAGGGAUUGUuGUGAGUUAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUU............................................................ len:18 al:18
.......................CAGGGAUUGUGGUGAGUUAG.......................................................... len:20 al:4
.......................CAGGGAUUGUGGUGAGUUAGUUaU...................................................... len:24 al:2
.......................CAGGGAUUGUGGUGAGUUAGUa........................................................ len:22 al:3
.......................CAGGGAUUGUGGUGAGUUAGUUa....................................................... len:23 al:6
.......................CAGGGAUcGUGGUGAGUUAG.......................................................... len:20 al:1
.......................CAGGGAUUGUGGUGAGUUgGU......................................................... len:21 al:1
.......................CAGGGAUUGUGGUGAGUUAGUUu....................................................... len:23 al:2
.......................CAGGGAUUGUGGUGAGUUAGgU........................................................ len:22 al:4
.......................CAGGGAUUGUGGUGAGUUA........................................................... len:19 al:1
.......................CAGGGAUUGUGGUGAGUUAa.......................................................... len:20 al:1
.......................CAGGGAUUGUGGUGgGUUAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUUgGUU........................................................ len:22 al:3
.......................CAGGGAUUGUGGUGgGUUAGU......................................................... len:21 al:2
.......................CAGGGAUUGUaGUGAGUU............................................................ len:18 al:1
.......................CAGGGAUUGUGGUGAGUUAGU......................................................... len:21 al:32
.......................CAGGGAUUGaGGUGAGUUAGUU........................................................ len:22 al:1
.......................CAGGGAUUGUGGUGAGUUAGUUc....................................................... len:23 al:3
.......................CAGGGAUUGUGGUGAGUc............................................................ len:18 al:5
.......................CAGGGAUUGUGGUGAGUa............................................................ len:18 al:4
.......................CAGGGAUUGUGGUGAGUUAGUc........................................................ len:22 al:19
.......................CAGGGAUUGUGGUGAGUUAGaU........................................................ len:22 al:1
........................AaGGAUUGUGGUGAGUUAGUU........................................................ len:21 al:1
........................AGGGAUUGUGGUGAGUUAGUUu....................................................... len:22 al:1
........................AGGGAUUGUGGUGAGUUgGU......................................................... len:20 al:1
........................AGGGAUUGUGGUGuGUUAGUUGU...................................................... len:23 al:1
........................AGGGAUUGUGGUGAGUUAGg......................................................... len:20 al:1
........................AGGGAUUGUGGUGAGUUAGUUGg...................................................... len:23 al:1
........................AGGGAUUGUGGUGAGUUgGUUGU...................................................... len:23 al:1
........................AGGGAUUGUGGUGAGUUAGUUGU...................................................... len:23 al:12
........................uGGGAUUGUGGUGAGUUAGUU........................................................ len:21 al:1
........................uGGGAUUGUGGUGAGUUAGUUGU...................................................... len:23 al:1
........................AGGGAUUGUGGUGAGUUAGUa........................................................ len:21 al:2
........................AGGGAUUGUGGUGAGUUAGUc........................................................ len:21 al:2
........................AGGGAUUGUGGUGAGUUgGUU........................................................ len:21 al:1
........................AGGGAUUGUGGUGAGUUAGUU........................................................ len:21 al:20
........................AGGGAUUGUGGUGAGUUAGU......................................................... len:20 al:5
........................AGGGAUUGUGGUGAGUUAGUUGc...................................................... len:23 al:4
.........................GGGAUUGUGGUGAGUUAGgU........................................................ len:20 al:1
.........................GGGAUUGUGGUGAGUUAGUc........................................................ len:20 al:1
.........................GGGAUUGUGGUGAGUUAGU......................................................... len:19 al:2
...........................GAUUGUGGUGAGUUAGUa........................................................ len:18 al:1
...........................GAUUGUGGUGAGUUAGUUGU...................................................... len:20 al:1
............................AUUGUGGUGAGUUAGUUGUU..................................................... len:20 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCUAg................... len:24 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCU..................... len:22 al:10
..........................................................CCAGCUCAUAUCAGUACCUGCa..................... len:22 al:2
..........................................................CCAGCUCAUAUCAGUACCUGCc..................... len:22 al:3
..........................................................CCAGCUCAUAUCAGUACCUGC...................... len:21 al:2
..........................................................CCAGCUCAUAUCAGUACCUGCUAc................... len:24 al:2
..........................................................CuAGCUCAUAUCAGUACCUGCUAA................... len:24 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCUAu................... len:24 al:4
..........................................................CCAGCUCAUAUCAGUACCUGCUA.................... len:23 al:18
..........................................................CCAGCUCAUAUCAGUACCUGCUAA................... len:24 al:1
..........................................................CCAGCUCAUAUCAGUACCUGCUu.................... len:23 al:1
............................................................AGCUCAUAUCAGUACCUGC...................... len:19 al:1
..............................................................CUCAUAUCAGUACCUGCUAAAAUUU.............. len:25 al:1