Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000005:601572-601666 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_1793.ps.pdf
Locus Name: Cluster_1793
UAUUCUUGGGAUACUCGUCUCUGCCACUCGUAUUUUCUUUCACGUUUAUCGAUGAAAGAAGUACAAGUGGUAGGGAGGGGGUGUCACCAAUUCGC
.....(((((((((((.(((((((((((.((((((.((((((((.....)).)))))))))))).)))))))))))..))))))).))))..... (-45.00)
UAUUCUUGGGAcACUCGUC............................................................................ len:19 al:1
UAUUCUUGGGAUACUCGUCa........................................................................... len:20 al:21
UAUUCUUGGaAUACUCGUCU........................................................................... len:20 al:1
UAUUCUUGGGAUACUCGUCU........................................................................... len:20 al:71
UAUUCUUGGGAUACUCGUaU........................................................................... len:20 al:1
UAUUCUUGGGAUACUCGUCg........................................................................... len:20 al:13
UgUUCUUGGGAUACUCGUCU........................................................................... len:20 al:42
UAUUCUUGGGAUACUCGUCc........................................................................... len:20 al:14
aAUUCUUGGGAUACUCGUCU........................................................................... len:20 al:1
.AUUCUUGGGAUACUCGUCa........................................................................... len:19 al:23
.AUUCUUGGGAUACUCGUCc........................................................................... len:19 al:21
.AUUCUUGGGAUACUCGUCg........................................................................... len:19 al:12
.AUUCUUGGGAUACUCGUuU........................................................................... len:19 al:2
.AUUCUUGGGAUACUCGUCU........................................................................... len:19 al:42
.AUUCUUGGGAUACUCGUC............................................................................ len:18 al:1
.AUUCUUGGGAUACUCGUaU........................................................................... len:19 al:1
.gUUCUUGGGAUACUCGUCU........................................................................... len:19 al:24
.AcUCUUGGGAUACUCGUCU........................................................................... len:19 al:1
..UUCUUGGGAUACUCGUCU........................................................................... len:18 al:13
..cUCUUGGGAUACUCGUCU........................................................................... len:18 al:1
..UUCUUGGGAUACUCGUCa........................................................................... len:18 al:3
..UUCUUGGGAUACUCGUCg........................................................................... len:18 al:1
..UUCUUGGGAUACUCGUCc........................................................................... len:18 al:2
.............CUCGUCUCUGCCACUCGUAUUUUCa......................................................... len:25 al:1
...................cCUGCCACUCGUAUUUUCUUUC...................................................... len:22 al:1
...................UCUGCCACUCGUAUUUUCUUUCg..................................................... len:23 al:1
...................UCUGCCACUCGUAUUUUCUUUC...................................................... len:22 al:10
...................UCUGCCACUCGUAUUUUCUUg....................................................... len:21 al:1
...................UCUGCCACUCGUAUUUUCUUUCA..................................................... len:23 al:7
...................UCUGCCACUCGUAUUUcCUUUCA..................................................... len:23 al:1
....................CUGuCACUCGUAUUUUCUUUC...................................................... len:21 al:2
....................CUGCCACUCGUAUUUUCUUUCc..................................................... len:22 al:7
....................CUGCCACUCGUAUUUUCUU........................................................ len:19 al:4
....................CUGCCACUCGUAUUUUCcUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUUCUUaC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUUCUUUCu..................................................... len:22 al:34
....................CUGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:992
....................CUGCCACUCGUAUUUUCUa........................................................ len:19 al:1
....................CUGCCuCUCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACgCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUUUCcUUCA..................................................... len:22 al:1
....................CUGCCACUCcUAUUUUCU......................................................... len:18 al:1
....................CaGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:5
....................CUGCCACUCGUAUUUUCUUcCA..................................................... len:22 al:1
....................CgGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUcUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAUUUUCUUU....................................................... len:20 al:16
....................CUGCCACUCGUAUcUUCUUUC...................................................... len:21 al:2
....................CUGCCACUaGUAUUUUCUUUC...................................................... len:21 al:2
....................CUGCCACUCGUAUUUUCUaU....................................................... len:20 al:1
....................CcGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:7
....................CUGCCACUCGUAUUUUCUUgCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUUUCUUUu...................................................... len:21 al:5
....................gUGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUUUCUUUa...................................................... len:21 al:13
....................CUGCCAuUCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAgUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAUUUUCUc........................................................ len:19 al:1
....................CUGCCACUCGUAUUUUCUUUCACGUUUAUCG............................................ len:31 al:1
....................CUGCCACUuGUAUUUUCUUUC...................................................... len:21 al:1
....................CUGCCACcCGUAUUUUCUUUC...................................................... len:21 al:1
....................CUGCCACUCGUAUUUUCUUUC...................................................... len:21 al:200
....................uUGCCACUCGUAUUUUCUUUC...................................................... len:21 al:3
....................CUGCCACcCGUAUUUUCUUUCA..................................................... len:22 al:2
....................aUGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUcUCUUUC...................................................... len:21 al:2
....................CUGCuACUCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGuCACUCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAUUUUCUUa....................................................... len:20 al:2
....................CUGCCACUCaUAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUUcCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUcUCUUUCA..................................................... len:22 al:3
....................CUGCCgCUCGUAUUUUCUUUCA..................................................... len:22 al:2
....................CUGCCACUCGUAUUUUCUUUCg..................................................... len:22 al:23
....................uUGCCACUCGUAUUUUCUUUCA..................................................... len:22 al:5
....................CUGCCACUCGUAUUUUCU......................................................... len:18 al:6
....................CUGCCACUCGcAUUUUCUUUCA..................................................... len:22 al:1
....................CUGCCACUCGUAUUUUCUUc....................................................... len:20 al:7
.....................UGCCACUCGUAUUUUCUUUC...................................................... len:20 al:6
.....................UGCCACUCGUAUUUUCUUU....................................................... len:19 al:1
.....................UGCCACUCGUAUUUUCUUUCA..................................................... len:21 al:2
...................................................AUGAAAGAAGUACAAGUGGc........................ len:20 al:1
....................................................UGAAAGAAGUACAAuUGGUAGGG.................... len:23 al:1
....................................................UcAAAGAAGUACAAGUGGUAGG..................... len:22 al:1
....................................................UcAAAGAAGUACAAGUGGUAGGG.................... len:23 al:1
.....................................................GAAAGAAGUACAAGUGGU........................ len:18 al:1
.....................................................cAAAGAAGUACAAGUGGUAGGG.................... len:22 al:7
.....................................................cAAAGAAGUACAAGUGGUAG...................... len:20 al:6
.....................................................aAAAGAAGUACAAGUGGUAGG..................... len:21 al:1
.....................................................cAAAGAAGUACAAGUGGUAGG..................... len:21 al:8
.....................................................GAAAGAAGUACAAGUGGUAG...................... len:20 al:2
.....................................................aAAAGAAGUACAAGUGGUAGGG.................... len:22 al:3
.....................................................aAAAGAAGUACAAGUGGUAGGGA................... len:23 al:1
......................................................AAAGAAGUACAAGUcGUA....................... len:18 al:1
......................................................AAAGAAGUACgAGUGGU........................ len:17 al:2
......................................................AAAGcAGUACAAGUGGUA....................... len:18 al:1
......................................................AAAGAAGUACAAGUGGUAGc..................... len:20 al:93
......................................................AAAGAAGUACAAGaGGUAGGG.................... len:21 al:15
......................................................AAAGAAGUACAAGcGGUAGGG.................... len:21 al:90
......................................................AAAGAAGUACAAGUGGUAGGGAu.................. len:23 al:55
......................................................AAAGAAGUACuAGUGGUAG...................... len:19 al:8
......................................................uAAGAAGUACAAGUGGUAGGGA................... len:22 al:6
......................................................AAcGAAGUACAAGUGGUAGGG.................... len:21 al:643
......................................................AAAGgAGUACAAGUGGUAGG..................... len:20 al:23
......................................................AAAGAAGUACcAGUGGUAGGG.................... len:21 al:7
......................................................AAAGuAGUACAAGUGGUAG...................... len:19 al:3
......................................................AAAGAAGUAaAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGUcCAAGUGGUAGGG.................... len:21 al:6
......................................................cAAGAAGUACAAGUGGUAG...................... len:19 al:147
......................................................AAAGAAGUACAAGUGGUAGu..................... len:20 al:483
......................................................AAAGAAGUACAAGUGGc........................ len:17 al:26
......................................................AAAGuAGUACAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUAuAAGUGGUAGG..................... len:20 al:4
......................................................AAAGAAGgACAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGaACAAGUGGUA....................... len:18 al:1
......................................................AAAGAAaUACAAGUGGUAGGG.................... len:21 al:23
......................................................AAAGAAGgACAAGUGGUAGGG.................... len:21 al:4
......................................................AuAGAAGUACAAGUGGUAG...................... len:19 al:11
......................................................AAAGAAGUAgAAGUGGUAG...................... len:19 al:1
......................................................AAgGAAGUACAAGUGGUA....................... len:18 al:14
......................................................AAAGAAGaACAAGUGGUAG...................... len:19 al:3
......................................................AcAGAAGUACAAGUGGUAG...................... len:19 al:33
......................................................AAAGAAGUACAAGUGGU........................ len:17 al:134
......................................................AAAGAAGUACAAGUaGUA....................... len:18 al:2
......................................................AAAGAAGUACAAGaGGUAG...................... len:19 al:4
......................................................AAAGAgGUACAAGUGGUAGGG.................... len:21 al:130
......................................................AAAGAAGUACAAGUGGUu....................... len:18 al:8
......................................................AAAGAAaUACAAGUGGUA....................... len:18 al:2
......................................................AAAGAAGUACAAGUGGgAG...................... len:19 al:23
......................................................AAAGAAGUACAAGUGGUAcGG.................... len:21 al:4
......................................................AAuGAAGUACAAGUGGUAG...................... len:19 al:6
......................................................AAAGcAGUACAAGUGGUAGGG.................... len:21 al:3
......................................................AAAGAAGUACgAGUGGUAGGG.................... len:21 al:205
......................................................AAAGAAGUACAAGUuGUAGGG.................... len:21 al:13
......................................................cAAGAAGUACAAGUGGUAGG..................... len:20 al:85
......................................................AAAGAAGUACAAuUGGUAGGGA................... len:22 al:1
......................................................uAAGAAGUACAAGUGGUAGGG.................... len:21 al:72
......................................................AAgGAAGUACAAGUGGUAGGG.................... len:21 al:175
......................................................AgAGAAGUACAAGUGGUAGG..................... len:20 al:27
......................................................AAAGAAGUACAAGgGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGUAGcG.................... len:21 al:414
......................................................AAAGAAGUACAAuUGGUAGGG.................... len:21 al:12
......................................................AAAGAAGUACAAGcGGUAGGGA................... len:22 al:5
......................................................AAAGcAGUACAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGUgG...................... len:19 al:93
......................................................AAcGAAGUACAAGUGGU........................ len:17 al:3
......................................................AAAGAAGUACAAGUGcUAGGG.................... len:21 al:1
......................................................AAAGAAGUAaAAGUGGUAGGG.................... len:21 al:5
......................................................AAAGAAGUACuAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACAgGUGGUAGGGA................... len:22 al:9
......................................................AAAGAAGUACAAGUGGgAGGGA................... len:22 al:1
......................................................AgAGAAGUACAAGUGGUAG...................... len:19 al:81
......................................................AAAGAAGUgCAAGUGGUAGGGA................... len:22 al:16
......................................................AAAGAAGUACAAGUGGUAGGGAuG................. len:24 al:2
......................................................AAAGAAGUACAAGUGGa........................ len:17 al:4
......................................................AAAGAAGUACAAGUGuUAGG..................... len:20 al:3
......................................................AAAGAAGUAuAAGUGGUA....................... len:18 al:1
......................................................AAAGAAGUACAAGUGGUuGGG.................... len:21 al:42
......................................................AAAGAAGUACAgGUGGUAGGG.................... len:21 al:152
......................................................AAAGAcGUACAAGUGGUAGGG.................... len:21 al:3
......................................................AAcGAAGUACAAGUGGUAG...................... len:19 al:266
......................................................AAAGAAGUACAgGUGGU........................ len:17 al:2
......................................................gAAGAAGUACAAGUGGUAGGG.................... len:21 al:252
......................................................AAAGAAGUACAAGUGGUAaGG.................... len:21 al:41
......................................................AAAGAAGUACAcGUGGUAGGG.................... len:21 al:7
......................................................AAAGAAGUACAgGUGGUAGG..................... len:20 al:22
......................................................AAAGAAGUACAAGUGGaAGGG.................... len:21 al:12
......................................................AAAGAAGUACAAGUGGUAGaG.................... len:21 al:1122
......................................................AAAGAAGUACAAGUGaUAGGG.................... len:21 al:28
......................................................AAAGAAGUACAAGgGGUA....................... len:18 al:3
......................................................AAAGAAGUACAAGUGGUAGGGg................... len:22 al:984
......................................................AAAGAAGUACAAuUGGUAG...................... len:19 al:1
......................................................AAAGAAaUACAAGUGGUAGGGA................... len:22 al:3
......................................................AAAGAAGaACAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGUAGGcA................... len:22 al:15
......................................................AAAGAAGUgCAAGUGGUAGG..................... len:20 al:25
......................................................AAAGAAGUACAAGUuGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGUAGa..................... len:20 al:2424
......................................................AAAGAAGUAuAAGUGGUAGGG.................... len:21 al:37
......................................................AAAGAAGUACAAcUGGUAGGG.................... len:21 al:2
......................................................AAAGAAGUACuAGUGGUAGG..................... len:20 al:6
......................................................AAAGAAGUACAAGUGGUAGGaA................... len:22 al:30
......................................................AAAGAAGUAuAAGUGGUAG...................... len:19 al:23
......................................................AAAGAAGUACAAGcGGUA....................... len:18 al:3
......................................................AgAGAAGUACAAGUGGUAGGGA................... len:22 al:13
......................................................AuAGAAGUACAAGUGGUAGG..................... len:20 al:5
......................................................AAAGAAGUACAAGUGGUAGGG.................... len:21 al:43823
......................................................AgAGAAGUACAAGUGGU........................ len:17 al:1
......................................................AAAGAgGUACAAGUGGUAGG..................... len:20 al:29
......................................................AAAGAAuUACAAGUGGUAGGG.................... len:21 al:3
......................................................AAAGAAGUACAAGUGGUAcG..................... len:20 al:181
......................................................cAAGAAGUACAAGUGGUAGGG.................... len:21 al:375
......................................................AcAGAAGUACAAGUGGUAGGGA................... len:22 al:9
......................................................AAAGAAGUACAAGUGGUAa...................... len:19 al:3926
......................................................AAAGAAGUACAAGUGGUAGGGuGG................. len:24 al:3
......................................................AAAGAAGUACgAGUGGUAGG..................... len:20 al:36
......................................................AAAGAAGUACAAGUGGUAGGGAG.................. len:23 al:5
......................................................AAAGAAGUACAAGUGGUcG...................... len:19 al:208
......................................................AAAuAAGUACAAGUGGUAG...................... len:19 al:5
......................................................AAAGAAGUACAAGcGGUAG...................... len:19 al:26
......................................................AAAGAAGUACAAGUGGUAGGGcG.................. len:23 al:6
......................................................AAAGAAGUACAAGUGGUAGGGAc.................. len:23 al:7
......................................................AAAGAAGUACuAGUGGUA....................... len:18 al:1
......................................................AAAGAAGUACgAGUGGUAGGGA................... len:22 al:12
......................................................AAAGAAGUACAAGUGcUA....................... len:18 al:1
......................................................AAAGAAuUACAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGgAGG..................... len:20 al:8
......................................................cAAGAAGUACAAGUGGUA....................... len:18 al:17
......................................................AAAGAAGUACAAGUGGgA....................... len:18 al:4
......................................................AAAGAAGUACAAaUGGUAG...................... len:19 al:6
......................................................AAAGAAGUACAAGUGGUAGGc.................... len:21 al:642
......................................................gAAGAAGUACAAGUGGUAGG..................... len:20 al:45
......................................................AAAGAAGUACAAGUGGUAGGa.................... len:21 al:15473
......................................................AAAGAAGUACAAGUGGUcGGG.................... len:21 al:29
......................................................AAAGAAGUACAAGUGGcAG...................... len:19 al:25
......................................................AAAGAAGUACAAGUGGcAGGG.................... len:21 al:82
......................................................AAAGuAGUACAAGUGGUAGG..................... len:20 al:3
......................................................AAAGAgGUACAAGUGGUAG...................... len:19 al:61
......................................................AAAGAAGUACAAuUGGUAGG..................... len:20 al:1
......................................................AAAGAAGcACAAGUGGUAGGGA................... len:22 al:5
......................................................AAgGAAGUACAAGUGGUAG...................... len:19 al:66
......................................................AAAGAAGUACAgGUGGUAG...................... len:19 al:47
......................................................AAAGAAGUAaAAGUGGUAGG..................... len:20 al:1
......................................................AAAGAAGUcCAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGUACAAGUGGUAGGGA................... len:22 al:2616
......................................................AAAGAAGUACAAGUGGUAGG..................... len:20 al:8123
......................................................AAAGAAGgACAAGUGGUAGGGA................... len:22 al:2
......................................................AuAGAAGUACAAGUGGUAGGG.................... len:21 al:33
......................................................AAAGAAGUACAAGUGGgAGGG.................... len:21 al:21
......................................................AAAGAAGUACAuGUGGUAGGG.................... len:21 al:22
......................................................AAAGAAGUACAAGUGGUAc...................... len:19 al:577
......................................................AAAGAAGUACAAGcGGUAGG..................... len:20 al:9
......................................................AAAGAuGUACAAGUGGUAG...................... len:19 al:2
......................................................AAAGAAGUACAAGUGGcAGGGA................... len:22 al:5
......................................................AAAGAAGUACAAGUGGaA....................... len:18 al:47
......................................................AAAGAAuUACAAGUGGUAG...................... len:19 al:4
......................................................AAAGAuGUACAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACAAGUGGUgGG..................... len:20 al:30
......................................................AAcGAAGUACAAGUGGUA....................... len:18 al:38
......................................................AAuGAAGUACAAGUGGUAGG..................... len:20 al:7
......................................................AAgGAAGUACAAGUGGUAGGGA................... len:22 al:9
......................................................AAAGAAGUACAAGUGGUAGGGc................... len:22 al:3198
......................................................AAAGAAGUACAAGUGGUAG...................... len:19 al:18119
......................................................AAAGAAGcACAAGUGGUAGGG.................... len:21 al:64
......................................................AAAGAAGcACAAGUGGUA....................... len:18 al:2
......................................................AAAGAAGUgCAAGUGGUAGGG.................... len:21 al:111
......................................................AAAGAAaUACAAGUGGUAGG..................... len:20 al:1
......................................................AAAGgAGUACAAGUGGUAGGGA................... len:22 al:10
......................................................AAAGAAGUACAAGUGGUAaG..................... len:20 al:85
......................................................AAAGAAGUAgAAGUGGUAGGG.................... len:21 al:3
......................................................AAcGAAGUACAAGUGGUAGGGA................... len:22 al:46
......................................................AAAGAAGUACAAGUGGUAGaGA................... len:22 al:6
......................................................AgAGAAGUACAAGUGGUAGGG.................... len:21 al:213
......................................................AAAGAAGUACgAGUGGUA....................... len:18 al:9
......................................................AAAGAAGUACgAGUGGUAG...................... len:19 al:87
......................................................AAAGAgGUACAAGUGGUAGGGA................... len:22 al:6
......................................................AAAGAAGUACAAGUcGUAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGUuG...................... len:19 al:12
......................................................AAAGAAGUACAAGUGGUAuGG.................... len:21 al:16
......................................................AAAaAAGUACAAGUGGUAGGG.................... len:21 al:7
......................................................AAAGAAGUACAAGUGGUuGG..................... len:20 al:4
......................................................AAuGAAGUACAAGUGGUAGGG.................... len:21 al:18
......................................................AAAGuAGUACAAGUGGUA....................... len:18 al:1
......................................................AAAGAAGUACAAGUGGUA....................... len:18 al:2232
......................................................AAAGAAGUACAAGUaGU........................ len:17 al:1
......................................................AAAGAAGUACAAGUGGUAGGGu................... len:22 al:12707
......................................................AAAGAgGUACAAGUGGUA....................... len:18 al:10
......................................................AAAGAAGUACcAGUGGUAGG..................... len:20 al:3
......................................................AAAcAAGUACAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACcAGUGGUAG...................... len:19 al:3
......................................................AAAGAAGUACAAGUGGcA....................... len:18 al:43
......................................................AcAGAAGUACAAGUGGUAGGG.................... len:21 al:86
......................................................AAAGAAGUACAAGUGGUgGGG.................... len:21 al:175
......................................................AAAGAuGUACAAGUGGUA....................... len:18 al:1
......................................................AAAGAAGUACAcGUGGUAG...................... len:19 al:5
......................................................AAAGgAGUACAAGUGGUA....................... len:18 al:8
......................................................AAAGAAGUACAAGUGGaAG...................... len:19 al:5
......................................................AAgGAAGUACAAGUGGUAGG..................... len:20 al:23
......................................................AAAGAAGUACAuGUGGUAGG..................... len:20 al:5
......................................................AAAGAAaUACAAGUGGUAG...................... len:19 al:8
......................................................AAAGAAGUACAAGUGGUAGGuA................... len:22 al:4
......................................................AAAGAAGUACAAGUGGaAGG..................... len:20 al:1
......................................................AAAGAAGUACAAGUGGUcGG..................... len:20 al:63
......................................................uAAGAAGUACAAGUGGUAGG..................... len:20 al:11
......................................................AAcGAAGUACAAGUGGUAGG..................... len:20 al:120
......................................................AAAGAAGUACAAGUGGUAuGGA................... len:22 al:3
......................................................AAAGAAGUACAAGUaGUAG...................... len:19 al:16
......................................................AAAGAAGUACAAGUGGUgGGGA................... len:22 al:12
......................................................AAAGuAGUACAAGUGGUAGGG.................... len:21 al:16
......................................................AgAGAAGUACAAGUGGUA....................... len:18 al:7
......................................................AAAGAAcUACAAGUGGUAGGG.................... len:21 al:3
......................................................AAAcAAGUACAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGUACAAGUGGUAGGGgG.................. len:23 al:4
......................................................AAAaAAGUACAAGUGGUAG...................... len:19 al:4
......................................................AAAGAAGUACAAGUGcU........................ len:17 al:1
......................................................AAuGAAGUACAAGUGGUA....................... len:18 al:2
......................................................AAAGAAGUACAAGgGGUAGGG.................... len:21 al:14
......................................................AAAGAAGUACAAGUGGUAu...................... len:19 al:528
......................................................AAAGAAGUACAAGUGGUAGuGA................... len:22 al:3
......................................................AAAGAAGaACAAGUGGUAGGG.................... len:21 al:8
......................................................AAAGcAGUACAAGUGGUAG...................... len:19 al:1
......................................................AAAGAAGUACAAGUGGg........................ len:17 al:9
......................................................uAAGAAGUACAAGUGGUAG...................... len:19 al:30
......................................................AAAGAAGUACAAaUGGUAGGG.................... len:21 al:14
......................................................AAAGAAGUACAAGUaGUAGGG.................... len:21 al:30
......................................................AAAGAAGUACAAGUGuUAGGG.................... len:21 al:6
......................................................AAAGAAGUACAAGgGGUAG...................... len:19 al:5
......................................................AAAGAAGUACAAGUGGaAGGGA................... len:22 al:1
......................................................AAAGAAGUACAAGUuGUAG...................... len:19 al:4
......................................................AAAGgAGUACAAGUGGUAG...................... len:19 al:72
......................................................AAAGAAGUACAAGUGG......................... len:16 al:1
......................................................gAAGAAGUACAAGUGGUAGGGA................... len:22 al:11
......................................................AcAGAAGUACAAGUGGUAGG..................... len:20 al:17
......................................................AAAGAAGUACAAGaGGUAGGGA................... len:22 al:2
......................................................AAAGAAGcACAAGUGGUAGG..................... len:20 al:8
......................................................AAAGAAGUACAuGUGGUAG...................... len:19 al:20
......................................................AAAGAAGUACAAGUGGUAaGGA................... len:22 al:3
......................................................AAAGAAGUAuAAGUGGUAGGGA................... len:22 al:1
......................................................AAAGAAGUACAAGUGGcAGG..................... len:20 al:19
......................................................AAAGAAGUACAAGUGGUAGGGuG.................. len:23 al:88
......................................................AAAGAAGUACAAGUGGUg....................... len:18 al:50
......................................................AAAGAAGUACAAaUGGUAGG..................... len:20 al:3
......................................................AAAGAAGUACAAGUGGUuGGGA................... len:22 al:3
......................................................AAAGgAGUACAAGUGGUAGGG.................... len:21 al:142
......................................................AuAGAAGUACAAGUGGUAGGGA................... len:22 al:2
......................................................AAAGAuGUACAAGUGGUAGGG.................... len:21 al:11
......................................................AAAGAAGUACAAGUGaUAGG..................... len:20 al:7
......................................................AAuGAAGUACAAGUGGUAGGGA................... len:22 al:2
......................................................AAAGAAGcACAAGUGGUAG...................... len:19 al:32
......................................................AAAGAAGUACAgGUGGUA....................... len:18 al:7
......................................................AAAGAAGUACAAGUaGUAGGGA................... len:22 al:3
......................................................AAAGAAGUACAAGUGGUAGGGAa.................. len:23 al:39
......................................................AAAGAAGUACAAGUGGUAGGu.................... len:21 al:2951
......................................................AAAuAAGUACAAGUGGUAGGG.................... len:21 al:2
......................................................AAAGAAGUACAAGUaGUAGG..................... len:20 al:2
......................................................AAAGAAGUACAAGaGGUAGG..................... len:20 al:5
......................................................cAAGAAGUACAAGUGGUAGGGA................... len:22 al:16
......................................................AAAGAAGUACAcGUGGUAGG..................... len:20 al:2
......................................................AcAGAAGUACAAGUGGUA....................... len:18 al:9
......................................................AAAGAAGUACAAGUGaUAGGGA................... len:22 al:4
......................................................AAAGAAGUACuAGUGGUAGGG.................... len:21 al:32
......................................................AAAGAAGUACAAGUGGUAGuG.................... len:21 al:29
.......................................................AAGAAGUACAAGUGGUAGGG.................... len:20 al:34
.......................................................AAGAAGUACAAGUGGUcGG..................... len:19 al:1
.......................................................AAGAAGUACAAGUGGUAGaG.................... len:20 al:2
.......................................................AAGAAGUACAAGUGGUAGG..................... len:19 al:12
.......................................................AAGAAGUACAAGUGGUAGGc.................... len:20 al:1
.......................................................AAGAAGUACAAGUGGUAGGGc................... len:21 al:1
.......................................................cAGAAGUACAAGUGGUAGGG.................... len:20 al:1
.......................................................AAGAAGUACAAGUGGUAGu..................... len:19 al:1
.......................................................AAGAAGUACAAGUGGUAGGa.................... len:20 al:14
.......................................................AAGAAGUACAAGUGGUAGGGg................... len:21 al:1
.......................................................AAGAAGUACAAGUGGUgGG..................... len:19 al:1
.......................................................AAGAAGUACgAGUGGUAGGG.................... len:20 al:1
.......................................................AAGAAGUACAAGUGGUAGGu.................... len:20 al:4
.......................................................AAGAAGUACAAGUGGUAG...................... len:18 al:14
.......................................................AAGAAGUACAAGUGGUAa...................... len:18 al:3
.......................................................AAGAAGUACAAGUGGUAGGGu................... len:21 al:17
.......................................................AAuAAGUACAAGUGGUAGG..................... len:19 al:1
.......................................................AAGAAGUACAAGUGGUAcG..................... len:19 al:1
.......................................................AAaAAGUACAAGUGGUAGGG.................... len:20 al:1
.......................................................uAGAAGUACAAGUGGUAGGG.................... len:20 al:1
........................................................AGAAGUACAgGUGGUAGGG.................... len:19 al:2
........................................................AGAAGUACAAGUGGUAGGa.................... len:19 al:12
........................................................AaAAGUACAAGUGGUAGGG.................... len:19 al:1
........................................................AGAAGUACAAGUGGUAGcG.................... len:19 al:1
........................................................AGAAGUACAAGUGGUAGGGc................... len:20 al:6
........................................................AGAAGUACAAGUGGUAGG..................... len:18 al:5
........................................................AGAAGUACAAGUGGUAGGGg................... len:20 al:2
........................................................AGAAGUACAAGUGGUAGGG.................... len:19 al:44
........................................................AGAAGUACAAGUGGUAGGGA................... len:20 al:6
........................................................AGAAGUACAAGUGGUAG...................... len:17 al:3
........................................................AGAAGUACAAGUGGUAGGGu................... len:20 al:17
........................................................uGAAGUACAAGUGGUAGGG.................... len:19 al:1
........................................................AGAAGUACAAGUGGUAGGu.................... len:19 al:1
........................................................AGAAGUACAAGUGGUAcG..................... len:18 al:1
.........................................................GAAGUACAAGUGGUAGGG.................... len:18 al:5
.........................................................GAAGUACAAGUGGUAGGa.................... len:18 al:1
.........................................................aAAGUACAAGUGGUAGGG.................... len:18 al:2
..........................................................AAGUACAAGUGGUAGGGc................... len:18 al:4
..........................................................AAGUACAAGUGGUAG...................... len:15 al:1
..........................................................AAGUACAAGUGGUAGGGu................... len:18 al:3
...........................................................................AGGGGGUGUCgCCAAUUCGC len:20 al:1
...........................................................................AGGGGGUGUCACCAAUUCGC len:20 al:1