Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000003:495066-495158 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_1116.ps.pdf
Locus Name: Cluster_1116
AAACUGCUGUCUGUGGACAUGGUGAAAGUCGCUUCAAUAAACAUUUGACUGUAUAUUGUACGACUCUCAUCGUGUCCAAGGCGGCCUCGACCG
.....(((((((.((((((((((((.(((((...(((((.(((......))).)))))..))))).)))))))))))))))))))........ (-40.80)
...................UcGUGAAAGUCGCUUCAAUAAACA.................................................. len:24 al:1
...................UGGUGAAAGUCGCUUCAAUAAACA.................................................. len:24 al:2
....................GGUGAAAGUCGCUUCAAUAAA.................................................... len:21 al:1
....................GGUGAAAGUCGCUUCAAUAAACA.................................................. len:23 al:8
....................aGUGAAAGUCGCUUCAAUAAACA.................................................. len:23 al:1
....................GGUGAAAGUCGCUUCAAUAAAC................................................... len:22 al:1
..................................................GUAUAUUGUACGACUCUCAUCGgG................... len:24 al:1
...................................................UAUAUUGUACGACUCUCAUCGUa................... len:23 al:35
...................................................UAUAUUGUACGACUCUCuUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGUG................... len:23 al:73
...................................................aAUAUUGUACGACUCUCAUCGU.................... len:22 al:3
...................................................UAUAUcGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUuGUG................... len:23 al:2
...................................................UAUAUUGUACGACUCUCAU....................... len:19 al:4
...................................................UAUAUUGUACGACUCUCAUCGUc................... len:23 al:9
...................................................UAUAUUGUgCGACUCUCAUCG..................... len:21 al:1
...................................................UAUAUUGUACGACUCUCAUCGg.................... len:22 al:34
...................................................UAUAUUGUACGACUCUCAUCGUGc.................. len:24 al:6
...................................................UAUAUUGUACGACUCUCAUCGUGg.................. len:24 al:6
...................................................UAUAUUGUACGACUCgCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAcC...................... len:20 al:1
...................................................UgUAUUGUACGACUCUCAUCGUGU.................. len:24 al:1
...................................................UAUAUUGUACGACcCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCcU.................... len:22 al:6
...................................................UAUAUUGUACGACUCUCAUCaU.................... len:22 al:15
...................................................cAUAUUGUACGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCA........................ len:18 al:2
...................................................UAUAUUGUACGACUCUCAUCGUGU.................. len:24 al:22
...................................................UAUAUUGUACGACUCUCAUCGUGUa................. len:25 al:2
...................................................UAUAUUGUgCGACUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUAuGACUCUCAUCGU.................... len:22 al:2
...................................................cAUAUUGUACGACUCUCAUC...................... len:20 al:2
...................................................UAUAUUGUACGACUCUCAUuGU.................... len:22 al:11
...................................................UAUAUUGUACGACUCUCAUCGaG................... len:23 al:1
...................................................cAUAUUGUACGACUCUCAUCGU.................... len:22 al:5
...................................................UAUAUUGUACGACUCUCAUCGcG................... len:23 al:4
...................................................UAUAcUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAcAUUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUC...................... len:20 al:55
...................................................UAUAUUGUACGACUCUCAUCGc.................... len:22 al:109
...................................................aAUAUUGUACGACUCUCAUC...................... len:20 al:1
...................................................UgUAUUGUACGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCG..................... len:21 al:5
...................................................UAUAUUGUACGACUCUCAUCGUu................... len:23 al:31
...................................................UAUAUUGUACGACUCcCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGU.................... len:22 al:438
...................................................UAUAUUGUACGgCUCUCAUCGUG................... len:23 al:1
...................................................UAUAUUGUACGACUCUCAUCa..................... len:21 al:4
...................................................UAUAUUGUgCGACUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCgUC...................... len:20 al:1
...................................................UAUAUUGUACGACUCUCAUCGUGa.................. len:24 al:4
...................................................UAUAUUGUACGgCUCUCAUCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUCGa.................... len:22 al:43
...................................................UAUAUUGUACGACUCUCAUCGUuU.................. len:24 al:4
...................................................UAUAUUGUACGACUCUCAUCGUGUu................. len:25 al:4
...................................................UAUAUUGUACGACUCUCAUu...................... len:20 al:1
...................................................UAUAUUGUACGACUCUCAUCGgG................... len:23 al:4
...................................................UAUAaUGUACGACUCUCAUCGU.................... len:22 al:3
...................................................UAUAUUGUACGACUCUCAcCGU.................... len:22 al:1
...................................................UAUAUUGUACGACUCUCAUa...................... len:20 al:3
...................................................UAUAUUGcACGACUCUCAUCGU.................... len:22 al:1
....................................................AUAUUGUACGACUCUCAUCGgG................... len:22 al:1
....................................................AUAUUGUACGACUCUCAUCGU.................... len:21 al:1
.....................................................UAUUGUACGACUCUCAUCGU.................... len:20 al:1