Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:16106559-16106650 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_1080.ps.pdf
Locus Name: Cluster_1080
CUGAAAUACAGCUGAAGCCUGAUGGGCGAUAAGGAUUCACAUCUUUAAGGUGUUAUUUUUAUCGUCCAUUAGGAUUUGCGUGUAAAGAUACC
......((((((.(((.(((((((((((((((((((..((((((...)))))).))))))))))))))))))).))))).))))........ (-36.40)
....................GAUGGGCGAUAAGGAUUCACAUCa................................................ len:24 al:1
....................GAUGGGCGAUAAGGAUUCACAUCUUUu............................................. len:27 al:1
....................GAUGGGCGAUAAGGAUUCACAUCaU............................................... len:25 al:1
....................GAUGGGCGAUAAGGAUUCAC.................................................... len:20 al:3
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGG.......................................... len:30 al:2
....................GAUGGGCGAUAAGGAUUCACAUC................................................. len:23 al:29
....................GAUGGGCGAUAAGGAUUCACu................................................... len:21 al:3
....................GAUGGGCGAUAAGGAUUCACAUCU................................................ len:24 al:2
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGa.......................................... len:30 al:1
....................GAUGGGCGAUAAGGAUUCACAc.................................................. len:22 al:2
....................GAUGGGCGAUAAGGAUUCACg................................................... len:21 al:2
....................GAUGGGCGAUAAGGAUUCACAUCUUUAAGGU......................................... len:31 al:1
....................GAUGGGCGAUAAGGAUUCA..................................................... len:19 al:1
....................GAUGGGCGAUAAGGAUUCACA................................................... len:21 al:13
....................GAUGGGCGAUAAGGAUUCACAU.................................................. len:22 al:11
....................GAUGGGCGAUAAGGAUUCACAUCUUU.............................................. len:26 al:1
....................GgUGGGCGAUAAGGAUUCACA................................................... len:21 al:2
....................GAUGGGCGAUAAaGAUUCACAUC................................................. len:23 al:1
....................aAUGGGCGAUAAGGAUUCACAU.................................................. len:22 al:1
....................GAUGGGCGAUAAGGAUUCACAUa................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACgUC................................................. len:23 al:1
....................GAUGGGCGAUAAGGAUUCACAUu................................................. len:23 al:13
....................GAUGGGCGAUAAGGAUUCACAUaU................................................ len:24 al:1
.....................AUGGGCGAUAAGGAUUCACAUCa................................................ len:23 al:2
.....................AUGGGCGAUAAGGAUUCACu................................................... len:20 al:1
.....................AUGGGCGAUAAGGAUUCACAUCU................................................ len:23 al:1
.....................AUGGGCGAUAAGGAUUCACAU.................................................. len:21 al:2
.....................AUGGGCGAUAAGGAUUCACAUCg................................................ len:23 al:1
......................UGGGCGAUAAGGAUUCACAUC................................................. len:21 al:8
......................UGGGCGAUAAGGAUUCACAUCU................................................ len:22 al:6
......................UGGGCGAUAAGGAUUCACAUCa................................................ len:22 al:3
......................UGGGuGAUAAGGAUUCACAUCU................................................ len:22 al:1
......................UGGGCGAUAAGGAUUCACAU.................................................. len:20 al:1
......................UGGGCGAUAAGGAUUCACAUu................................................. len:21 al:8
........................GGCGAUAAGGAUUCACAUCa................................................ len:20 al:1
...............................................AGGUGUUAUUUUUAUCGUCCAUUAGcA.................. len:27 al:1
.................................................GUGUUAUUUUUAUCGUCCAUUAGuA.................. len:25 al:1
.................................................GUGUUAUUUUUAUCGUCCAUUAGu................... len:24 al:1
..................................................UGUUAUUUUUAUCGUCCAcUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCAUa...................... len:20 al:74
..................................................UGUUAUUUUUAUCGUCCuUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAgU...................... len:20 al:19
..................................................UGUUAUUUUUAUCGUCCAcU...................... len:20 al:15
..................................................UGUUAUUUUUAUCGUCCAaU...................... len:20 al:6
..................................................UGUUAUUUUUAUCGUCCAUg...................... len:20 al:14
..................................................UGUUAUUUUUAUCGUCgAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUUg..................... len:21 al:1
..................................................aGUUAUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGGu.................. len:24 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAGG................... len:23 al:58
..................................................aGUUAUUUUUAUCGUCCAUUAGG................... len:23 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGaA.................. len:24 al:2
..................................................UGUUAUUUUUAUCGUCuAUU...................... len:20 al:1
..................................................UGcUAUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUUuGG................... len:23 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAGu................... len:23 al:1172
..................................................UGUUgUUUUUAUCGUCCAUUAGG................... len:23 al:1
..................................................UGUUAUUUUUAUCGUCCAUUAGuA.................. len:24 al:19
..................................................UGUUAUUUUcAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCA........................ len:18 al:1
..................................................UGUUAUUUUUAUCGUCCAcUA..................... len:21 al:1
..................................................UGUUAUUUUUAUCGUCCAUUA..................... len:21 al:17
..................................................UGUUAUUUUUAUCGUCCAUUAu.................... len:22 al:2
..................................................UGUUAUUUUUAUCGUCCAU....................... len:19 al:3
..................................................UGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:165
..................................................UGUUAUUUUUAUCGUCCAUc...................... len:20 al:115
..................................................UGUUAUUaUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUgUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUcAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUCCAUU...................... len:20 al:763
..................................................UGUUAUUUUUAUCGUCCAUUAGc................... len:23 al:275
..................................................UGUUAUUUUUAUCGUCCAUUAc.................... len:22 al:3
..................................................UGUUAUcUUUAUCGUCCAUU...................... len:20 al:1
..................................................cGUUAUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................UGUUAUUUUUAUCGUuCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCAUUuG.................... len:22 al:1
..................................................UaUUAUUUUUAUCGUCCAUU...................... len:20 al:2
..................................................gGUUAUUUUUAUCGUCCAUU...................... len:20 al:1
..................................................UGUUAUUUUUAUCGUCCgUU...................... len:20 al:4
..................................................UGUUAUUUUUAUCGUCCAUUgG.................... len:22 al:1
..................................................cGUUAUUUUUAUCGUCCAUUAG.................... len:22 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAGa................... len:23 al:49
..................................................UGUUAUUUUUAUCGcCCAUU...................... len:20 al:3
..................................................UGcUAUUUUUAUCGUCCAUUAG.................... len:22 al:1
..................................................UGUUAUUUUUAUCGUCCg........................ len:18 al:2
..................................................UGUUAUUUUUAUCGUCCAUUAa.................... len:22 al:7
..................................................UGUUAUUUUUgUCGUCCAUU...................... len:20 al:2
...................................................GUUAUUUUUAUCGUCCAUUAGu................... len:22 al:1
...................................................GUUAUUUUUAUCGUCCAUU...................... len:19 al:5
....................................................UUAUUUUUAUCGUCCAUU...................... len:18 al:4
....................................................UUAUUUUUAUCGUCCAUUAGc................... len:21 al:1
....................................................UUAUUUUUAUCGUCCAUUAGu................... len:21 al:3
.....................................................UAUUUUUAUCGUCCAUUAGu................... len:20 al:1
......................................................AUUUUUAUCGUCCAUUAGu................... len:19 al:1