Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/data/Pocillopora_meandrina_HIv1.assembly.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Pocillopora_meandrina_HIv1___Sc0000002:15749261-15749351 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/F-Ptuh/output/05-Ptuh-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_1068.ps.pdf
Locus Name: Cluster_1068
AGGAAAUUUUUGUCACCUUUACGGCAUCACUUGUUAGCAUUAUUUACUAACGCUAGGAAGGGAUGCCGGGAAGGCGAUAGAACAUUUGACG
...(((((((((((.((((..(((((((.(((.(((((.(((.....))).))))).))).)))))))..)))).))))))).)))).... (-36.20)
....................ACGGCAUCACUUGUUAGCAg................................................... len:20 al:1
....................ACGGCAUCACUUGUUAGCAUUA................................................. len:22 al:4
....................ACGGCAUCACUUGUUAGCAUUAUa............................................... len:24 al:2
..........................................UUUACUAACGCUAGGAAGGGAUGCCGGGA.................... len:29 al:1
.................................................ACGCUAGGAAGGGAUGCCG....................... len:19 al:3
.................................................ACGCUAGGAAGGGAUGCCa....................... len:19 al:2
.................................................ACGCUAGGAAGGGAUGCCGGaA.................... len:22 al:2
.................................................ACGCUgGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................ACaCUAGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGAg................... len:23 al:1
.................................................ACGCUAGGAAGGGAUGCC........................ len:18 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGAu................... len:23 al:13
.................................................ACGCUAGGAAGGGAUGCCGGG..................... len:21 al:21
.................................................ACGCUAGGAAGGGAUGuCGGG..................... len:21 al:1
.................................................ACGCUAGGAAGGGAUGCCGGa..................... len:21 al:3
.................................................ACGCUAGGAAGGGAUGCCGGu..................... len:21 al:3
.................................................ACGCUAGGAAGGGAUGCCGGGg.................... len:22 al:8
.................................................ACGCUAGGAAGGGAUGCCGGGc.................... len:22 al:3
.................................................ACGCUAGGAAGGGgUGCCGGGA.................... len:22 al:2
.................................................ACGCUAGGAAGGGAUGCCGG...................... len:20 al:1
.................................................ACGCUAGGAAGGGAUGCaG....................... len:19 al:1
.................................................ACGCUAGGAAaGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGu.................... len:22 al:15
.................................................ACGCUAGGAAGGGAUGCCGGGAA................... len:23 al:5
.................................................cCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................AuGCUAGGAAGGGAUGCCGGG..................... len:21 al:1
.................................................gCGCUAGGAAGGGAUGCCGGGA.................... len:22 al:1
.................................................ACGCUAGGAAGGGAUGCCGGGA.................... len:22 al:162