FastQCFastQC Report
Thu 5 Sep 2024
RNA-POC-48-S1-TP2_R2_001.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameRNA-POC-48-S1-TP2_R2_001.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52036501
Total Bases7.8 Gbp
Sequences flagged as poor quality0
Sequence length150
%GC44

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGCATAGCCAGTGCTTGAGAAGAAATGTGTACAGAAGGCTGAAAGGAGA639380.12287144364299205No Hit
GAGGAGGCCCTCATCTGGCGATTTCCACTGGGCGCCTCGGAGCTGCGGAC613550.11790762026831897No Hit
GTCTAACATGTGCGCGAGTCTTTGGGTGAGAGAAACCCCGAGGCGCAATG574620.1104263332386626No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)