warning: line 1 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" does not begin with "##gff-version" or "##gvf-version", create "##gff-version 3" line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000000" on line 1 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000001" on line 33127 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000002" on line 64939 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid 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such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000007" on line 175235 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000008" on line 192505 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000009" on line 210563 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000010" on line 215677 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000011" on line 230197 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000012" on line 248729 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000013" on line 260407 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000014" on line 268893 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000015" on line 282707 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000016" on line 295921 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000017" on line 306033 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid 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such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000022" on line 356229 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000023" on line 362999 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000024" on line 369915 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000025" on line 374199 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000026" on line 380293 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000027" on line 389185 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000028" on line 394997 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000029" on line 403181 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000030" on line 410323 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000031" on line 417845 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000032" on line 424377 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid 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such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000037" on line 446979 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000038" on line 450461 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000039" on line 454987 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000040" on line 458349 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000041" on line 460519 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000042" on line 463895 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000043" on line 466071 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000044" on line 468541 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000045" on line 470561 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000046" on line 471799 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000047" on line 472367 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid 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such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000053" on line 472893 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000054" on line 472933 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000055" on line 473133 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000056" on line 473221 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000057" on line 473293 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000060" on line 473419 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000061" on line 473457 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000062" on line 473477 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000063" on line 473531 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000064" on line 473549 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000066" on line 473567 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid 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such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000071" on line 474019 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000072" on line 474103 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000073" on line 474145 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000074" on line 474149 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000075" on line 474183 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000076" on line 474223 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000077" on line 474267 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000078" on line 474313 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000079" on line 474335 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000080" on line 474371 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000081" on line 474395 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___Sc0000083" on line 474419 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000000" on line 474439 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000001" on line 474663 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000002" on line 475049 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000003" on line 475635 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000004" on line 475847 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000006" on line 476171 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000007" on line 476333 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000012" on line 476359 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000014" on line 476395 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000021" on line 476671 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000024" on line 476721 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000029" on line 476777 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000038" on line 476807 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000058" on line 476819 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000059" on line 476915 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000074" on line 476949 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000081" on line 476971 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000083" on line 477047 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000092" on line 477081 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000113" on line 477105 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000132" on line 477235 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000145" on line 477257 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000146" on line 477369 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000168" on line 477393 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000175" on line 477507 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000195" on line 477511 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000199" on line 477515 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000205" on line 477543 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000206" on line 477561 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000212" on line 477651 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000217" on line 477711 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000223" on line 477729 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000228" on line 477769 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000237" on line 477811 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000262" on line 477891 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000264" on line 477941 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000272" on line 477969 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000275" on line 477991 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000288" on line 478087 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000300" on line 478101 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000301" on line 478113 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000343" on line 478175 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000376" on line 478213 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000415" on line 478291 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000423" on line 478387 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000426" on line 478439 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000428" on line 478477 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000445" on line 478483 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000447" on line 478495 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000469" on line 478499 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000477" on line 478545 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000479" on line 478633 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000482" on line 478703 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000488" on line 478731 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000506" on line 478743 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000527" on line 478801 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000540" on line 478867 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000555" on line 478931 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000565" on line 479021 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000566" on line 479029 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000567" on line 479037 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000579" on line 479087 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000583" on line 479137 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000596" on line 479177 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000616" on line 479235 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000621" on line 479285 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000642" on line 479299 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000655" on line 479361 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000699" on line 479433 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000704" on line 479459 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000705" on line 479463 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000716" on line 479475 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000725" on line 479539 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000760" on line 479557 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000763" on line 479561 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000765" on line 479623 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000788" on line 479637 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000811" on line 479701 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000812" on line 479757 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000817" on line 479787 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000824" on line 479863 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000835" on line 479897 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000836" on line 479901 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000837" on line 479937 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000840" on line 479967 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000859" on line 480011 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000866" on line 480021 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000868" on line 480033 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000885" on line 480063 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000886" on line 480069 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000890" on line 480081 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000892" on line 480105 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000943" on line 480117 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000948" on line 480139 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000952" on line 480155 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000953" on line 480195 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000957" on line 480211 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000968" on line 480239 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000974" on line 480285 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000975" on line 480313 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0000995" on line 480375 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0001011" on line 480387 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0001122" on line 480391 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0001170" on line 480433 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0001179" on line 480445 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xfSc0001231" on line 480507 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001273" on line 480513 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001275" on line 480595 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001276" on line 480599 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001280" on line 480627 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001281" on line 480643 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001290" on line 480673 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001321" on line 480725 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001331" on line 480737 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically warning: seqid "Pocillopora_meandrina_HIv1___xpSc0001355" on line 480747 in file "/home/sam/gitrepos/urol-e5/deep-dive-expression/F-Ptuh/data/intermediate.gff3" has not been previously introduced with a "##sequence-region" line, create such a line automatically