Settings:
  Output files: "../output/06-Peve-Hisat/Apulcra-genome.index.*.ht2"
  Line rate: 6 (line is 64 bytes)
  Lines per side: 1 (side is 64 bytes)
  Offset rate: 4 (one in 16)
  FTable chars: 10
  Strings: unpacked
  Local offset rate: 3 (one in 8)
  Local fTable chars: 6
  Local sequence length: 57344
  Local sequence overlap between two consecutive indexes: 1024
  Endianness: little
  Actual local endianness: little
  Sanity checking: disabled
  Assertions: disabled
  Random seed: 0
  Sizeofs: void*:8, int:4, long:8, size_t:8
Input files DNA, FASTA:
  ../data/Porites_evermanni_v1.fa
Reading reference sizes
  Time reading reference sizes: 00:00:03
Calculating joined length
Writing header
Reserving space for joined string
Joining reference sequences
  Time to join reference sequences: 00:00:03
  Time to read SNPs and splice sites: 00:00:00
Using parameters --bmax 4398822 --dcv 1024
  Doing ahead-of-time memory usage test
  Passed!  Constructing with these parameters: --bmax 4398822 --dcv 1024
Constructing suffix-array element generator
Converting suffix-array elements to index image
Allocating ftab, absorbFtab
Entering GFM loop
Exited GFM loop
fchr[A]: 0
fchr[C]: 171827598
fchr[G]: 281650468
fchr[T]: 391517086
fchr[$]: 563049165
Exiting GFM::buildToDisk()
Returning from initFromVector
Wrote 192766316 bytes to primary GFM file: ../output/06-Peve-Hisat/Apulcra-genome.index.1.ht2
Wrote 140762296 bytes to secondary GFM file: ../output/06-Peve-Hisat/Apulcra-genome.index.2.ht2
Re-opening _in1 and _in2 as input streams
Returning from GFM constructor