Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_910:139331-139420 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_8888.ps.pdf
Locus Name: Cluster_8888
AGAAGACUGGGCGAUGCGGGUCAAAUGUUUCGGCUUGUUCCCGUUUCAGAGAACAAGCCGAAGCAUUUGACUUUUGUCUGCCAAUAUUAC
.........(((((((.(((((((((((((((((((((((.(......).))))))))))))))))))))))).)))).)))........ (-45.30)
AGAAGACUGGGCGAUGCGGGUC.................................................................... len:22 al:6
AGAAGACUGGGCGgUGCGGGUC.................................................................... len:22 al:1
.GAAGACUGGGCGAUGCGGGUC.................................................................... len:21 al:2
..AAGACUGGGCGAUGCGGGUu.................................................................... len:20 al:2
..AAGACUGGGCGAUGCGGGUC.................................................................... len:20 al:7
....................UCAAAUGUUUCGGCUUGUUCCCu............................................... len:23 al:3
.....................CAAAUGUUUCGGCUUGUUCCCc............................................... len:22 al:1
.....................CAAAUGUUUCGGCUUGUUCCCcU.............................................. len:23 al:1
.....................CAAAUGUUUCGGCUUGUUCCC................................................ len:21 al:2
.....................CAAAUGUUUCGGCUUGUUCCCu............................................... len:22 al:9
.....................CAAAUGUUUCGGCUUGUUCCCa............................................... len:22 al:1
.....................CAAAUGUUUCGGCUUGUUCCu................................................ len:21 al:1
.....................aAAAUGUUUCGGCUUGUUCCC................................................ len:21 al:1
......................AAAUGUUUCGGCUUGUUCCCu............................................... len:21 al:1242
......................AAAUGUUUCGGCUUGUaCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUuCC................................................ len:20 al:7
......................AAAUGUUUaGGCUUGUUCCC................................................ len:20 al:3
......................AAAUGUUgCGGCUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUuC................................................. len:19 al:13
......................AAAUGgUUCGGCUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUaC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUGUU................................................... len:17 al:45
......................AAAUGUUUCGGCaUGUUCCC................................................ len:20 al:3
......................AAAUGUUUCGGCUUuUUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGcU................................................... len:17 al:1
......................AAAUGUUUCGGCUUGUUCCCuU.............................................. len:22 al:47
......................AAAUGUUUCGGCUUGUUCg................................................. len:19 al:20
......................AAAUGUUUCGGCUcGUUCCC................................................ len:20 al:25
......................AAAUGUUUCGGCUUGUaCCC................................................ len:20 al:2
......................AAAUGaUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGaCUUGUUCC................................................. len:19 al:3
......................AAAUGUUUCGGCUUGUUCCCcU.............................................. len:22 al:8
......................AAAUGUUUCGGCUUG..................................................... len:15 al:1
......................AAgUGUUUCGGCUUGUUCCC................................................ len:20 al:33
......................AAAUuUUUCGGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCGU.............................................. len:22 al:2
......................AAAUGUUUCGGCUUGUUCC................................................. len:19 al:1183
......................AAAcGUUUCGGCUUGUUCCC................................................ len:20 al:23
......................AAAUGUUUCGGCUaGUUCCC................................................ len:20 al:1
......................AAAcGUUUCGGCUUGUUCC................................................. len:19 al:4
......................AAcUGUUUCGGCUUGUUCC................................................. len:19 al:10
......................AAAUGUUUCGaCUUGUUCCC................................................ len:20 al:7
......................AAAgGUUUCGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUaUUCCC................................................ len:20 al:11
......................AAcUGUUUCGGCUUGUUCCC................................................ len:20 al:51
......................AAAUGUUUCGGCUUGUUCCCGUU............................................. len:23 al:3
......................AAAUGUUUCGGCUUGUUCCCc............................................... len:21 al:234
......................AAAUGUUUCGGCUUGUUaC................................................. len:19 al:8
......................AAAUGUUUCGGCUUGUUCCa................................................ len:20 al:453
......................AAAUGUUUCGGCUUGgUC.................................................. len:18 al:1
......................AAAUGUUUCGaCUUGUU................................................... len:17 al:1
......................AAAUGUUUCGGCUUGUgC.................................................. len:18 al:1
......................AAAUGUgUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGaUCCC................................................ len:20 al:4
......................AAAUGUUUCGGCUUGUUCaC................................................ len:20 al:4
......................AAAUGUUUCGGCcUGUUC.................................................. len:18 al:3
......................AAAUGUUUCGGCcUGUUCCC................................................ len:20 al:33
......................AAAUGUUUCGGCUUGUUCa................................................. len:19 al:777
......................AAAaGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGUUCCCa............................................... len:21 al:81
......................AAAUGUUcCGGCUUGUUCCC................................................ len:20 al:22
......................AAAUGUUcCGGCUUGUUC.................................................. len:18 al:2
......................AAAUaUUUCGGCUUGUUCCC................................................ len:20 al:5
......................AAAUGUUUCGGCUUGUUg.................................................. len:18 al:1
......................AAAUuUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAgUGUUUCGGCUUGUUCC................................................. len:19 al:4
......................AAAUGUUUCGGuUUGUUCC................................................. len:19 al:4
......................AAAcGUUUCGGCUUGUUC.................................................. len:18 al:4
......................AAAUGUUUCGGCUUuUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUcC.................................................. len:18 al:4
......................AAcUGUUUCGGCUUGUUC.................................................. len:18 al:9
......................AAAUGUUUCGGCUUGUUCCCGUc............................................. len:23 al:1
......................AAAUGUUUCGGCUUGUcCCC................................................ len:20 al:28
......................AAAUGUUUCGGCUUGUUCu................................................. len:19 al:374
......................AAAUGUUUCGGCUUGcUCCCG............................................... len:21 al:1
......................AAAUGUUUCGGCUUGU.................................................... len:16 al:6
......................AAAUGUUUuGGCUUGUUCCC................................................ len:20 al:8
......................AAAUGUUUCGGCcUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCUgGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGaCUUGUUC.................................................. len:18 al:2
......................AAAUGUUUCGGCUUGUUgC................................................. len:19 al:1
......................AgAUGUUUCGGCUUGUUCC................................................. len:19 al:5
......................AAAUGUaUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCcUGUU................................................... len:17 al:2
......................AAAUGUUUCGGCUUGUgCCC................................................ len:20 al:2
......................AAAUGUUcCGGCUUGUUCCCG............................................... len:21 al:2
......................AAAUGUUUCGGCUUGUUgCC................................................ len:20 al:1
......................AAAUGUUUCaGCUUGUUCCC................................................ len:20 al:10
......................gAAUGUUUCGGCUUGUUCC................................................. len:19 al:1
......................gAAUGUUUCGGCUUGUUC.................................................. len:18 al:3
......................AAAUGUUUCGGgUUGUUCCC................................................ len:20 al:3
......................AAAUGUcUCGGCUUGUU................................................... len:17 al:1
......................AAAUGUUUCGGCUUGUUCuC................................................ len:20 al:12
......................AAAUGUUUCGGCUUGUUCCu................................................ len:20 al:3716
......................AAAUGUUUCaGCUUGUUCC................................................. len:19 al:2
......................AAAUGUUUCGGCUUGUc................................................... len:17 al:6
......................AAAUGUUUCGGCUUGcUCC................................................. len:19 al:5
......................AAAUGUUUCGGCUUGUgCC................................................. len:19 al:1
......................AAAUaUUUCGGCUUGUUCC................................................. len:19 al:2
......................AAAUGUUUuGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUGUUCCCuUUU............................................ len:24 al:12
......................AAAgGUUUCGGCUUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUCCC................................................ len:20 al:9474
......................AAAUGUUUCGGCUUGcUCCC................................................ len:20 al:33
......................AAAUGUUUCGGCUUGUUC.................................................. len:18 al:967
......................AAAUGUcUCGGCUUGUUCCC................................................ len:20 al:23
......................AAAUGUUUCGGCUUGUUu.................................................. len:18 al:660
......................AAAUGUUUCGGCUUGUUaCC................................................ len:20 al:1
......................AAAUGUUUCGGCUUGcUC.................................................. len:18 al:2
......................AAAUGUcUCGGCUUGUUCC................................................. len:19 al:5
......................AgAUGUUUCGGCUUGUUCCC................................................ len:20 al:45
......................AAAUGcUUCGGCUUGUUCCC................................................ len:20 al:18
......................AAAUGUUUCGGCUcGUUCC................................................. len:19 al:4
......................AAAUGUUaCGGCUUGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUGUcCC................................................. len:19 al:4
......................gAAUGUUUCGGCUUGUUCCC................................................ len:20 al:6
......................AAAUGUUUCGGCUUGgUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCgUGUUCCC................................................ len:20 al:2
......................AAAUGUUUCGGCUUGUUCCCG............................................... len:21 al:68
......................AAAUGUUUCGuCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGCUcGUUC.................................................. len:18 al:1
......................AAAUGUUUCGGCUUGUUCCg................................................ len:20 al:63
......................AAAUGUUUCuGCUUGUUCC................................................. len:19 al:1
......................AAAUGUUUCGGCUUGUUCCCuUU............................................. len:23 al:32
......................AAAUGUUUCGGCUUGUUaCCG............................................... len:21 al:1
......................AAgUGUUUCGGCUUGUUC.................................................. len:18 al:3
......................AuAUGUUUCGGCUUGUUCCC................................................ len:20 al:2
......................AAuUGUUUCGGCUUGUUCCC................................................ len:20 al:1
......................AAAUGUUUCGGuUUGUUCCC................................................ len:20 al:8
......................AAAUGUUUCGGCUUGUUa.................................................. len:18 al:39
.......................AAUGUUUCGGCUUGUUCCCc............................................... len:20 al:2
.......................AAUGUUUCGGCUUGUUCCg................................................ len:19 al:2
.......................AgUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:2
.......................AAUGUUUCGGCUUGU.................................................... len:15 al:1
.......................AAUGUUUCGGCUUGUUCCCGU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCa................................................. len:18 al:1
.......................AAUGUUUCGGCUUGUUCCCuUUU............................................ len:23 al:2
.......................AAUGUUUCGGCUUGUUCu................................................. len:18 al:3
.......................AAUGUUUCGGCUUGUUCC................................................. len:18 al:8
.......................AAUGUUUCGGCUUGUU................................................... len:16 al:1
.......................AAUGUUUCGGCUUGUUCCCG............................................... len:20 al:12
.......................AAUGUUUCGGCUUGUUCCCu............................................... len:20 al:7
.......................AAUGUUUCGGCUUGUUCCC................................................ len:19 al:23
.......................AAUGUUUCGGCUUGUUCCCuUU............................................. len:22 al:2
.......................AAUGUUUCGGCUUGUUC.................................................. len:17 al:1
.......................AAUGUUUCGGCUcGUUCC................................................. len:18 al:1
.......................AAUGUUUCGGCUUGUUCCCuU.............................................. len:21 al:1
.......................AAUGUUUCGGCUUGUUCCu................................................ len:19 al:13
.......................AAUGUUUCGGCUUGUUCCCGUU............................................. len:22 al:6
........................AUGUUUCGGCUUGUUCCCGUg............................................. len:21 al:2
........................AUGUUUCGGCUUGUUCCCG............................................... len:19 al:3
........................AUGUUUCGGCUUGUUCCCGUc............................................. len:21 al:3
........................AUGUUUCGGCUUGUUCCCc............................................... len:19 al:1
........................AUGUUUCGGCUUGUUCCC................................................ len:18 al:6
........................AUGUUUCGGCUUGUUCCu................................................ len:18 al:1
........................AUGUUUCGGCUUGUUCCCGUU............................................. len:21 al:6
........................AUGUUUCGGCUUGUUCCCu............................................... len:19 al:2
.........................UGUUUCGGCUUGUUCCCuUU............................................. len:20 al:8
.........................UGUUUCGGCUUGUUCCCG............................................... len:18 al:1
.........................UGUUUCGGCUUGUUCCCGU.............................................. len:19 al:1
.........................UGUUUCGGCUUGUUCCCGUc............................................. len:20 al:1
.........................UGUUUCGGCUUGUUCCCGUU............................................. len:20 al:5
............................................UUCAGAGAACAAGCCGAAGC.......................... len:20 al:1
.............................................UCAGAGAACAAGCCGAAG........................... len:18 al:1
...............................................AGAGgACAAGCCGAAGCAUUUGA.................... len:23 al:1
...............................................AGAGAACAAGCCGAAGCAUUUGA.................... len:23 al:4
................................................GAGAACAAGCCGAAGCAU........................ len:18 al:10
.................................................AGAACAAGCCGAAGCAUUUGA.................... len:21 al:5
.................................................AGAACAAGCCGAAGCAUU....................... len:18 al:11
.................................................cGAACAAGCCGAAGCAUU....................... len:18 al:3
..................................................GAACgAGCCGAAGCAUUU...................... len:18 al:2
..................................................GAACAAGCCGAAGCAUUUG..................... len:19 al:19
..................................................GAACAAGCCGAAGCAUUc...................... len:18 al:1
..................................................GAACAAGCCGAAGCAUUU...................... len:18 al:45
..................................................GAgCAAGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GgACAAGCCGAAGCAUUUGA.................... len:20 al:2
..................................................GAACAAGCCGAAGCAcUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCAUUUGg.................... len:20 al:3
..................................................GAACAAGCCGAAGCAUUUGAC................... len:21 al:4
..................................................aAACAAGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCAUUUGA.................... len:20 al:167
..................................................GAACAgGCCGAAGCAUUUGA.................... len:20 al:1
..................................................GAACAAGCaGAAGCAUU....................... len:17 al:1
..................................................GAACAAGCCGAAGCAUc....................... len:17 al:2
..................................................GAACAAGCCGAAGCAUUUGc.................... len:20 al:3
..................................................GAACAAGCCGAgGCAUUUGA.................... len:20 al:1
..................................................GAACAAGCCGAAGCgUUUGA.................... len:20 al:1
..................................................GAACAgGCCGAAGCAUUU...................... len:18 al:1
..................................................GAACAAGCCGAAGCAUUUGAu................... len:21 al:21
..................................................GAACAAGCCGAAGCAUUUGAa................... len:21 al:10
..................................................GAACAAGCCGAAGCAU........................ len:16 al:2
..................................................GAACAAGCCGAAGCAUU....................... len:17 al:17
..................................................GAACAAGCCGAAGCAUUUGAaU.................. len:22 al:14
..................................................GAACAAGCCGAAGCAUUUGu.................... len:20 al:9
..................................................GAAaAAGCCGAAGCAUUUGA.................... len:20 al:2
..................................................GAACAAGCCGAAGCAUaU...................... len:18 al:4
...................................................AACAAGCCGAAGCAUUUGA.................... len:19 al:1