Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_730:81363-81456 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_7657.ps.pdf
Locus Name: Cluster_7657
UCAACAGUAAAACUAACAAAACGCUAACUGUAAAACUAACAAGUUCAACUUGUUAGUUUACAGUUAGUGUUUUGUUAGCGUGGCUCAAACCCUG
.....(((....((((((((((((((((((((((.(((((((((...)))))))))))))))))))))))))))))))....)))......... (-42.20)
.CAACAGUAAAACUAACAAA.......................................................................... len:19 al:2
..................AAACGCUAACUGUAAAACUAACA..................................................... len:23 al:1
...................AACGCUAACUGUAAAACUAAC...................................................... len:21 al:3
...................AACGCUAACUGUAAAACUAACAAGc.................................................. len:25 al:1
...................AACGCUAACUGUAAAACUAACg..................................................... len:22 al:1
...................AACGCUAACUGUAAAACUAACAAGUU................................................. len:26 al:2
...................AACGCUAACUGUAAAACUAACAAG................................................... len:24 al:5
...................AACGCUAACUGUAAAACUAACAAGUUCAACU............................................ len:31 al:1
...................AACGCUAACUGUAAAACUAACA..................................................... len:22 al:12
...................AACGCUAACUGUAAAACUAACAAGU.................................................. len:25 al:6
....................ACGCUAACUGUAAAACUAACAAGc.................................................. len:24 al:28
....................ACGCUAACUGUAAAACUAgCA..................................................... len:21 al:3
....................ACGCUAACUGUgAAACUAAC...................................................... len:20 al:1
....................ACGCUAACUGUAgAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUgACAAG................................................... len:23 al:1
....................AuGCUAACUGUAAAACUAACAAGUUCAACU............................................ len:30 al:2
....................AuGCUAACUGUAAAACUAACAAGU.................................................. len:24 al:2
....................ACGCUAACUGUAAAACU......................................................... len:17 al:1
....................ACGCUAACUGUgAAACUAACA..................................................... len:21 al:1
....................ACGCcAACUGUAAAACUAACAAG................................................... len:23 al:1
....................gCGCUAACUGUAAAACUAAC...................................................... len:20 al:1
....................ACGCUAACUGUAAAACUAACAAGUUCAACc............................................ len:30 al:6
....................ACGCUAACUGUAAAACUAACAAa................................................... len:23 al:8
....................cCGCUAACUGUAAAACUAACAAG................................................... len:23 al:2
....................ACGCUAACUGUAAAACUAACc..................................................... len:21 al:1
....................ACGCUAACUGUAAAACcAACA..................................................... len:21 al:1
....................ACGaUAACUGUAAAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUgAC...................................................... len:20 al:1
....................ACGCUAACUGUAAAACUAACAgGU.................................................. len:24 al:3
....................ACGCUAACUGUAAAACUAACAAGUcCAACU............................................ len:30 al:1
....................ACGCUAACUGUAAAgCUAACAAG................................................... len:23 al:4
....................ACGCUAACUGUAAAACUAACAAGUUCAACg............................................ len:30 al:1
....................ACGCUAACUGUAAAACUAACAA.................................................... len:22 al:4
....................ACGuUAACUGUAAAACUAACAAG................................................... len:23 al:3
....................ACGuUAACUGUAAAACUAACA..................................................... len:21 al:2
....................ACGCUAACUGUAAAACUAA....................................................... len:19 al:13
....................ACGuUAACUGUAAAACUAACAAGU.................................................. len:24 al:1
....................ACGCUAACaGUAAAACUAACAAGU.................................................. len:24 al:2
....................ACGCUgACUGUAAAACUAACAAGU.................................................. len:24 al:2
....................ACGCUAACUGUAAgACUAACAAG................................................... len:23 al:2
....................ACGCUAACUGUAAAACUAACAgGUUCAACU............................................ len:30 al:1
....................ACGCUgACUGUAAAACUAACA..................................................... len:21 al:3
....................ACGCUAACUGUAAAACUAACAAGUUCAACUU........................................... len:31 al:26
....................ACGCUAACUGUAAAACUAACA..................................................... len:21 al:316
....................ACGCUAACUGUAAAACUAACAAuU.................................................. len:24 al:7
....................ACGCUAACcGUAAAACUAAC...................................................... len:20 al:1
....................ACGCUAACUGUAAAACUgACAAGU.................................................. len:24 al:1
....................ACGCUAACUGUAAAACUAACAAGUU................................................. len:25 al:42
....................ACaCUAACUGUAAAACUAACAAGU.................................................. len:24 al:1
....................ACGCUAACUGUAAAACUAACAAGcUCAACU............................................ len:30 al:1
....................ACGCUAACUGUAAgACUAACA..................................................... len:21 al:1
....................ACGCUAACUGUAAAACUAACAAGUUCAACa............................................ len:30 al:1
....................ACGCUAACUGUAAAACUuACA..................................................... len:21 al:1
....................ACaCUAACUGUAAAACUAAC...................................................... len:20 al:1
....................ACGCcAACUGUAAAACUAACA..................................................... len:21 al:2
....................ACGCUAACUGUAAAgCUAAC...................................................... len:20 al:1
....................ACGCUAACUGUAAAACUAgCAAG................................................... len:23 al:1
....................ACGgUAACUGUAAAACUAACAAGU.................................................. len:24 al:2
....................gCGCUAACUGUAAAACUAACAAGU.................................................. len:24 al:3
....................ACGCUAACUGUAAAgCUAACAAGU.................................................. len:24 al:1
....................AgGCUAACUGUAAAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUAACAAGUUCAACU............................................ len:30 al:62
....................ACGCUAACUGUAAAACUuAC...................................................... len:20 al:1
....................gCGCUAACUGUAAAACUAACAAGUUCAACU............................................ len:30 al:3
....................ACGCUAACUGUAAAACUAACAAGUUCAAC............................................. len:29 al:1
....................ACGCUAACUaUAAAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUAACAAGa.................................................. len:24 al:10
....................ACGCUAACUGUAAAAC.......................................................... len:16 al:2
....................ACGCUAACUGUAAAACUAACAAGg.................................................. len:24 al:4
....................ACGCUAACcGUAAAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUAAu...................................................... len:20 al:1
....................AuGCUAACUGUAAAACUAAC...................................................... len:20 al:1
....................AaGCUAACUGUAAAACUAACA..................................................... len:21 al:1
....................ACGCUAACUGcAAAACUAACAAGU.................................................. len:24 al:1
....................ACGCUAACUGUAAAACUAACAAGU.................................................. len:24 al:243
....................ACGCUAACUGUAAAACUAAC...................................................... len:20 al:117
....................ACGCUAACUGUAAAACUAACu..................................................... len:21 al:1
....................ACGCUAACUGUAAAgCUAACA..................................................... len:21 al:1
....................ACGCUAACUGUAAAACUAACAAGUUC................................................ len:26 al:1
....................ACGCUAACUGcAAAACUAACA..................................................... len:21 al:1
....................ACGCUAACcGUAAAACUAACA..................................................... len:21 al:1
....................ACGCUAACUGUAAAACUAACAAG................................................... len:23 al:374
....................uCGCUAACUGUAAAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAgACUAACAAGU.................................................. len:24 al:1
....................ACGCUAgCUGUAAAACUAACA..................................................... len:21 al:1
....................ACGCUAACcGUAAAACUAA....................................................... len:19 al:2
....................ACGCUAACUGUAAAACUA........................................................ len:18 al:2
....................gCGCUAACUGUAAAACUAACAAG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUAACgAGU.................................................. len:24 al:1
....................ACGCUAACUGUAAAACUAACAAu................................................... len:23 al:19
....................ACGCUAACUGUAAAACUAACAcG................................................... len:23 al:1
....................ACGCUAACUGUAAAACUAACAAcU.................................................. len:24 al:5
....................ACGCcAACUGUAAAACUAACAAGU.................................................. len:24 al:1
....................ACGCUAgCUGUAAAACUAACAAGU.................................................. len:24 al:3
....................ACGCUAACUGUAAAACUAACgAG................................................... len:23 al:2
....................ACGCUAACUGUAAAACUAACg..................................................... len:21 al:8
....................ACGCUAACUGUAgAACUAACA..................................................... len:21 al:3
.....................CGCUAACUGUAAAACUAAu...................................................... len:19 al:1
.....................CGCUAACUGUAAAACUAAC...................................................... len:19 al:5
.....................CGCUAACUGUAAAACUAACAAG................................................... len:22 al:1
.....................CGCUAACUGUAAAACUAACA..................................................... len:20 al:2
.......................uUAACUGUAAAACUAACAAGUUCAACUUGUU........................................ len:31 al:1
.......................CUAACUGUAAAACUAACAAG................................................... len:20 al:2
..................................................UGUUAGUUUACAGUUAGUGaU....................... len:21 al:1
..................................................UGUUAGUUUACAGcUAGUGUUU...................... len:22 al:2
..................................................UGUUAGUUUACAGUUAGUGUg....................... len:21 al:1
..................................................UGUUAaUUUACAGUUAGUGUU....................... len:21 al:1
..................................................UGUUgGUUUACAGUUAGUGUUUU..................... len:23 al:1
..................................................UGaUAGUUUACAGUUAGUG......................... len:19 al:1
..................................................UGUUAGUUUACgGUUAGUGUUU...................... len:22 al:7
..................................................cGUUAGUUUACAGUUAGUGUU....................... len:21 al:1
..................................................UGUUgGUUUACAGUUAGUGU........................ len:20 al:1
..................................................UGUUAGUUUACAGUUAGcGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUAGUcU........................ len:20 al:1
..................................................aGUUAGUUUACAGUUAGUGU........................ len:20 al:2
..................................................aGUUAGUUUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACgGUUAGUGUU....................... len:21 al:1
..................................................UGUUAGUUUACAGUUAGUGUUgU..................... len:23 al:1
..................................................cGUUAGUUUACAGUUAGUGUUU...................... len:22 al:5
..................................................UGUUAGUUUACAGUUAGUc......................... len:19 al:1
..................................................UGUUAGUUUACAGUcAGUGUU....................... len:21 al:2
..................................................UGUUAaUUUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUcUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUAGUGgU....................... len:21 al:3
..................................................aGUUAGUUUACAGUUAGUGUUUU..................... len:23 al:1
..................................................UGUUAGUUUACAGUUAGUGcUU...................... len:22 al:2
..................................................UGUUAGUUUACAGUUAGUGU........................ len:20 al:90
..................................................UGUUAGUUUACAGUUAGUGUUc...................... len:22 al:38
..................................................UGUUAGUUUACAGUUAGUGUcU...................... len:22 al:4
..................................................UGUUAGUUUACAGUUAGUGUa....................... len:21 al:5
..................................................UGUUAGUUUACAaUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUAGUGUUUa..................... len:23 al:4
..................................................UGUUAGUUUACAGUUAGUGUUUc..................... len:23 al:3
..................................................UGUcAGUUUACAGUUAGUGUU....................... len:21 al:2
..................................................UGUUAGUUUACAGUUAGU.......................... len:18 al:77
..................................................UGUUAGUUUACAGUUAGUGUUUU..................... len:23 al:132
..................................................UGcUAGUUUACAGUUAGUGUU....................... len:21 al:1
..................................................UGUUAGUUUACAGUUAGUGUgU...................... len:22 al:6
..................................................UGUUAGgUUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUgGUGUUU...................... len:22 al:2
..................................................UGUUAGUUUACAGUUAGUGcU....................... len:21 al:2
..................................................UGUUAGUUcACAGUUAGUGUU....................... len:21 al:1
..................................................UGUUAGUUUACAGUUAGUGUUU...................... len:22 al:649
..................................................UGUUgGUUUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUAGcGUU....................... len:21 al:3
..................................................UGUUAGUUUACAGUUAGUGUc....................... len:21 al:23
..................................................UGUUAGUUUACAGUUAGg.......................... len:18 al:2
..................................................UGUUAGUUUgCAGUUAGUGUUUU..................... len:23 al:2
..................................................UGUUAGUUUACAGUcAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUAGUGUUUUu.................... len:24 al:10
..................................................UGUUAGUUUACAGUUAaUGUUU...................... len:22 al:1
..................................................UGUUAGcUUACAGUUAGUGUUUU..................... len:23 al:2
..................................................UGcUAGUUUACAGUUAGUG......................... len:19 al:2
..................................................UGUUAGUUUACAGUUAGUG......................... len:19 al:33
..................................................cGUUAGUUUACAGUUAGUGUUUU..................... len:23 al:2
..................................................UGUUAGUUUACAGUUAGUGUUg...................... len:22 al:2
..................................................UGUUAGUUUACAGUUAGUGUU....................... len:21 al:283
..................................................UGUUAGUUUAuAGUUAGUGUU....................... len:21 al:3
..................................................UGUUAGUUUACAGUUAGUGUUUg..................... len:23 al:1
..................................................UGUUAGUUUACAGUUAGUGg........................ len:20 al:3
..................................................UGUUAGUUcACAGUUAGU.......................... len:18 al:1
..................................................UGUUAGUUUgCAGUUAGUGUUU...................... len:22 al:4
..................................................UGUUAGcUUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGcUAGUUUACAGUUAGUGUUU...................... len:22 al:1
..................................................UGUUAGUUUACAGUUAGUGUUaU..................... len:23 al:1
..................................................UGUUAGUUUACAGUUAGUGa........................ len:20 al:2
..................................................UGUUAGUUUACAGUUgGUGUU....................... len:21 al:1
..................................................UGUUAGUUUACAGUUAGc.......................... len:18 al:11
..................................................UGUUAGUUUACAGUUAGUGaUUU..................... len:23 al:1
..................................................UGUUAGUcUACAGUUAGUGUU....................... len:21 al:2
..................................................UGUUAGUUUACAGUUAGUGc........................ len:20 al:15
...................................................GUUAGUUUACAGUUAGU.......................... len:17 al:1
...................................................GUUAGUUUACAGUUAGUGUUUU..................... len:22 al:1
...................................................GUUAGUUUACAGUUAGUG......................... len:18 al:2
...................................................GUUAGUUUACAGUUAGUGUUU...................... len:21 al:3
...................................................GUUAGUUUACAGUUAGUGU........................ len:19 al:1
...................................................GUUAGUUUACAGUUAGUGUU....................... len:20 al:4
....................................................UUAGUUUACAGUUAGU.......................... len:16 al:2
....................................................UUAGUUUACAGUUAGUGUUUUu.................... len:22 al:4
....................................................UUAGUUUACAGUUAGUGU........................ len:18 al:2
....................................................UUAGUUUACAGUUAGUGUUUU..................... len:21 al:1
.....................................................UAGUUUACAGUUAGU.......................... len:15 al:1