Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_613:156453-156546 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_7053.ps.pdf
Locus Name: Cluster_7053
CAGACAUGUAUUUUCAUUAGCAGCUGCAAUGGCUUAGGAAAAAGUUAAUAUUUUCCUAAGUUGUUAUAGCUGUUGGUGUUAAUAUUCUGUUCAG
((((...(((((..((((((((((((.(((((((((((((((........))))))))))))))).))))))))))))..)))))))))..... (-38.90)
CAGACAcGUAUUUUCAUUAG.......................................................................... len:20 al:1
CAGACAUGUAUUUUCAUUAG.......................................................................... len:20 al:3
CAGACAUGUAUUUUCAUU............................................................................ len:18 al:5
....................CAGCUGCAAUGGCUUAGGAAAA.................................................... len:22 al:2
....................CAGCUGCAAUGGCUUAGGAAu..................................................... len:21 al:2
....................CAGCUGCAAUGGCUUAGGAuA..................................................... len:21 al:6
....................CAGCUGCAAUGGCUUAGGAAA..................................................... len:21 al:2
....................CAGCUGCAAUGGCUUAGGAAAAAGUUAAUAU........................................... len:31 al:1
.....................AGCUGCAAUGGCUUAGGAAAAA................................................... len:22 al:1
........................UGCAAUGGCUUAGGAAAA.................................................... len:18 al:2
...........................................GUUAAUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:31 al:6
...........................................GUUAAUAUUUUCCUAAGUUGUUAUAGCUGUU.................... len:31 al:3
..............................................AAUAUUUUCCUAAGUUGUUAUAGCUGUU.................... len:28 al:1
...............................................AUAUUUUCCUAAGUUGUUgUAGCUGUU.................... len:27 al:2
..................................................UUUUCCUAAGUUGUUAUAGCUGc..................... len:23 al:2
....................................................UUCCUAAGUUGUUAUAGCUGaU.................... len:22 al:2
....................................................UUCCUAAGUUGUUgUAGCU....................... len:19 al:300
....................................................UUCCUAgGUUGUUAUAGC........................ len:18 al:1
....................................................UUCCUAAGUUGUUAUA.......................... len:16 al:1
....................................................UUCCUAAGUUGUUgUAG......................... len:17 al:1
....................................................cUCCUAAGUUGUUAUAGCUGUU.................... len:22 al:8
....................................................UUCCUAAGUUGUUAUAGCUGc..................... len:21 al:29
....................................................UUCCUAAGUcGUUAUAGCUGUU.................... len:22 al:3
....................................................aUCCUAAGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAUAGCUGg..................... len:21 al:6
....................................................UUCCUAAGUUGUUgUAGCUGUUG................... len:23 al:4
....................................................UUCCUAAGUUGUUAUAGCUGUa.................... len:22 al:16
....................................................UUCuUAAGUUGUUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUAUAGCc....................... len:19 al:24
....................................................UUCCUAAGUUGUUAU........................... len:15 al:2
....................................................UUCCUAAGUUGUUAUAGCUGUU.................... len:22 al:1025
....................................................UUCCUAAGUUGUUAUAGCa....................... len:19 al:3
....................................................UUCCUAAGUUGUUAUAGCcGUU.................... len:22 al:2
....................................................UUCCUgAGUUGUUAUAGCU....................... len:19 al:1
....................................................UUCCUAAGUUGUUAUAGC........................ len:18 al:22
....................................................UUCCUAAGUUGUUAcAGCUGUU.................... len:22 al:3
....................................................UUCCUAAGUUGUUAUAGCUGgU.................... len:22 al:7
....................................................UUCCUAAGUUGUUgUAGCUGUU.................... len:22 al:3276
....................................................UUCCUAAGUUGUUAUAGCUG...................... len:20 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUc.................... len:22 al:94
....................................................UUCCUAAGUUGaUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUAUAGCUGcU.................... len:22 al:4
....................................................UUCCUAAGUUGcUAUAGCUGUU.................... len:22 al:5
....................................................UUCCUAAGUUGUcAUAGCUGUU.................... len:22 al:1
....................................................UUCCcAAGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAUAGu........................ len:18 al:6
....................................................UUCCUAAGUUGUUgUAGC........................ len:18 al:31
....................................................UUCCUAAGUUGUUAUAGCUGUUa................... len:23 al:10
....................................................UUCCUAuGUUGUUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUAUAGa........................ len:18 al:1
....................................................UUCCUAAGUUGUUAUAGuUGU..................... len:21 al:5
....................................................UUCCUAAGUUGUUAUAGCU....................... len:19 al:197
....................................................UUCCUgAGUUGUUAUAGCUGUU.................... len:22 al:1
....................................................UUCCUAAGUUGUUgUAGCUGU..................... len:21 al:137
....................................................UUCCUAAGUUGUUAUAGCUGUg.................... len:22 al:3
....................................................UUCCUAgGUUGUUAUAGCUGUU.................... len:22 al:6
....................................................UcCCUAAGUUGUUAUAGCU....................... len:19 al:4
....................................................UUCCUAAGUUGUUAUAGCUGa..................... len:21 al:4
....................................................UUCCUAgGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAUAGuU....................... len:19 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUUu................... len:23 al:332
....................................................UUCCUAAGUUGUUAUAGCUaUU.................... len:22 al:1
....................................................UcCCUAAGUUGUUAUAGCUGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAUgGCU....................... len:19 al:2
....................................................UUCCUAAGUUGUUAUAGCcGU..................... len:21 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUUc................... len:23 al:19
....................................................UUCCUAAGUUGUaAUAGCU....................... len:19 al:1
....................................................UUCCUAAGUUGUUAUAGCUGUUG................... len:23 al:1
....................................................UUCCUAAGUUGcUAUAGC........................ len:18 al:2
....................................................UUCCcAAGUUGUUAUAGCUGUU.................... len:22 al:5
....................................................UUCCUAAGUUGUUAUAGCUGU..................... len:21 al:232
....................................................UUCCUAAGUUGUUgUAGCUG...................... len:20 al:14
....................................................UUCCUAAGUUGUUAUAaCUGUU.................... len:22 al:5
....................................................UUCCUAAGUUGUUAUgGCUGUU.................... len:22 al:5
.....................................................UCCUAAGUUGUUAUAGCUGc..................... len:20 al:1
.....................................................UCCUAAGUUGUUAUAGCUGUUu................... len:22 al:3
.....................................................UCCUAAGUUGUUAUAGCUGU..................... len:20 al:6
.....................................................UCCUAAGUUGUUgUAGCUGUU.................... len:21 al:6
.....................................................UCCUAAGUUGUUAUAGCUG...................... len:19 al:1
......................................................CCUAAGUUGUUgUAGCUGUU.................... len:20 al:4
......................................................CCUAAGUUGUUAUAGCUGcU.................... len:20 al:1
......................................................CCUAAGUUGUUAUAGCUGUU.................... len:20 al:5
......................................................CCUAAGUUGUUAUAGCUGUc.................... len:20 al:1
...........................................................GUUGUUAUAGCUGUU.................... len:15 al:1
..........................................................................GGUGUUAAUAUUCUGUUCAG len:20 al:4
..........................................................................GGUGUUAAUAUUCUGUUC.. len:18 al:4