Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_590:199803-199896 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_6906.ps.pdf
Locus Name: Cluster_6906
GGAUUAAGAAGCUUACGUUUCGCGCGCUAGUCCUUUGGUAAAGCGUUUCGUUUCACGAAUGGCUAGUGCACGAUACGUAGGCUUGACCUUUCAU
(((.....((((((((((.(((.(((((((.((.((.((.(((((...))))).)).)).))))))))).))).)))))))))).....))).. (-41.60)
....................CGCGCGCUAGUCCUUUGGUAAAa................................................... len:23 al:2
....................CGCGCGCUAGUCCUUUGGc....................................................... len:19 al:5
....................CGCGCGCUAGUCCUUUGGUAA..................................................... len:21 al:9
....................CGCGCGCUAGUCCUUUGuU....................................................... len:19 al:1
....................CGCGCGCUAGUCCUUUGGUAAAG................................................... len:23 al:30
....................CGCGCGCUAGUCCUUUGGg....................................................... len:19 al:1
....................CGCGCGCUAGUCCUUUGGU....................................................... len:19 al:25
....................CGCGCGCUAGUCCUUUGGUAAAGu.................................................. len:24 al:12
....................CGCGCGCUAGUCCUUUGG........................................................ len:18 al:1
....................CGCGCGCUAGUCCUU........................................................... len:15 al:2
....................CGCGCGCUAGUCCUUUGGUAAc.................................................... len:22 al:2
....................CGCGCGCUAGUCCUUUGGUAAu.................................................... len:22 al:15
....................CGCGCGCUAGUCCUUUGGUAAA.................................................... len:22 al:12
....................CGCGCGCUAGUCCUUUGGUA...................................................... len:20 al:10
....................CGCGCGCUAGUCCUUUGGUAAAGC.................................................. len:24 al:4
....................CGCGCGCUAGUCCUUUGGUg...................................................... len:20 al:1
....................CGCGCGCUAGUCCUUUGGUAAgG................................................... len:23 al:3
....................CGCGCGCUAGUCCUUUGGgA...................................................... len:20 al:1
.....................GCGCGCUAGUCCUUUGGg....................................................... len:18 al:1
.....................GCGCGCUAGUCCUUUGGc....................................................... len:18 al:3
.....................GCGCGCUAGUCCUUUGGUAAAu................................................... len:22 al:4
.....................GCGCGCUAGUCCUUUGGUAAAG................................................... len:22 al:4
.....................GCGCGCUAGUCCUUUGGUAA..................................................... len:20 al:7
.....................GCGCGCUAGUCCUUUGGUAAAGu.................................................. len:23 al:8
.....................GCGCGCUAGUuCUUUGGUA...................................................... len:19 al:1
.....................GCGCGCUAGUCCUUUGGUAu..................................................... len:20 al:5
.....................GCGCGCUAGUCCUUUGGUAAu.................................................... len:21 al:10
.....................GCGCGCUAGUCCUUUGGUA...................................................... len:19 al:23
.....................GCGCGCUAGUCCUUUGGUAAA.................................................... len:21 al:8
.....................GCGCGCUAGUCCUUUGGU....................................................... len:18 al:7
......................CGCGCUAGUCCUUUGGUAAAG................................................... len:21 al:18
......................CGCGCUAGUCCUUUGGUAAA.................................................... len:20 al:5
......................CGCGCUAGUCCUUUGGUA...................................................... len:18 al:4
......................CGCGCUAGUCCUUUGGUAAgG................................................... len:21 al:1
......................CGCGCUgGUCCUUUGGUAAA.................................................... len:20 al:2
......................CGCGCUAGUCCUUUGGU....................................................... len:17 al:1
......................CGCGCUAGUCCUUUGGUAAAGu.................................................. len:22 al:1
...........................................CGUUUCGUUUaACGAAUGGCUAGUGCACGAU.................... len:31 al:1
..................................................UUUCACGAAUGGCUAGUGCACGA..................... len:23 al:1
..................................................UUUCACGAAUGGCUAGUG.......................... len:18 al:3
..................................................UUUaACGAAUGGCUAGUGCA........................ len:20 al:13
..................................................UUUaACGAAUGGCUAGUGCACG...................... len:22 al:119
..................................................UUUaACGAAUGGCUAGUGC......................... len:19 al:45
..................................................UUUgACGAAUGGCUAGUGCACG...................... len:22 al:3
..................................................UUUCACGAAUGGCUAGUGCAC....................... len:21 al:2
..................................................UUUCACGAAUGGCUAGUGCACu...................... len:22 al:29
..................................................UUUCACGAAUGGCUAGUGCACa...................... len:22 al:2
..................................................UUUaACGAAUGGCUAGUGCACGA..................... len:23 al:4
..................................................UUUCACGAAUGGCUAGUGC......................... len:19 al:2
..................................................UUUCAuGAAUGGCUAGUGCACG...................... len:22 al:1
..................................................UUUaACGAAUGGCUAGUG.......................... len:18 al:8
..................................................UUUaACGAAUGGCUAGUGCAC....................... len:21 al:15
..................................................UUUCACGAAUGGCUAGUGCACG...................... len:22 al:24
..................................................UUUCACGAAUGGCUAGUGCACc...................... len:22 al:2
...................................................UUCACGAAUGGCUAGUGCACG...................... len:21 al:1
...................................................UUaACGAAUGGCUAGUGCA........................ len:19 al:4
...................................................UUaACGAAUGGCUAGUGC......................... len:18 al:5
...................................................UUCACGAAUGGCUAGUGCACGAUu................... len:24 al:2
....................................................UCACGAAUGGCUAGUGCA........................ len:18 al:4
....................................................UCACGAAUGGCUAGUGCACc...................... len:20 al:4
....................................................UCACGAAUGGCUAGUGCACGAUAu.................. len:24 al:4
....................................................UCACGAAUGGCUAGUGCcCGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGU........................... len:15 al:7
....................................................UCACGAAUGGCUgGUGCACG...................... len:20 al:1
....................................................cCACGAAUGGCUAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGAg.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCgC....................... len:19 al:1
....................................................UaACGAAUGGCUAGUGC......................... len:17 al:3
....................................................UCACGAAUGGCUAGUGCACGgU.................... len:22 al:5
....................................................UCACGAAUGGCUAGUGCgCGAUAC.................. len:24 al:1
....................................................UCACGAAUGGCUAGUuCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGu..................... len:21 al:4
....................................................UaACGAAUGGCUAGUGCACGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCACu...................... len:20 al:16
....................................................UCACGAAUGGCUAGUGCACGAUAa.................. len:24 al:3
....................................................UCACGAAUGGCUAGUGCACGAc.................... len:22 al:28
....................................................UaACGAAUGGCUAGUGCACGA..................... len:21 al:26
....................................................UCACGAAUGGCUAGUGCACGAUg................... len:23 al:5
....................................................UCACGAAUGGCUAGUGCACGAUAC.................. len:24 al:1
....................................................UCACGAAUGGCUAGUGCACG...................... len:20 al:36
....................................................UCACGAAUGGCUAGUGCgCGAUA................... len:23 al:1
....................................................UCACGAAUGGCUAGUGCACGAUc................... len:23 al:107
....................................................UCACGAAUGGCUAGUGCACa...................... len:20 al:11
....................................................UCACGAAUGGCUAGUGCACGAU.................... len:22 al:432
....................................................UCACGAAUGGCUAGUGCACGg..................... len:21 al:2
....................................................UCgCGAAUGGCUAGUGCACGAU.................... len:22 al:4
....................................................UaACGAAUGGCUAGUGCACGAU.................... len:22 al:111
....................................................UaACGAAUGGCUAGUGCAC....................... len:19 al:15
....................................................UCACGAAUGGCUAGUGCAu....................... len:19 al:2
....................................................UCACGAAUGGCUAGUGCACGA..................... len:21 al:22
....................................................UCACGgAUGGCUAGUGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGuU.................... len:22 al:4
....................................................UCACGAAUGGCUAGUGCgCGAU.................... len:22 al:10
....................................................UCACGAAUGGCUAGUGCACGAa.................... len:22 al:3
....................................................UCgCGAAUGGCUAGUGCAC....................... len:19 al:1
....................................................UCACGAAUGGCUAGUGuACG...................... len:20 al:1
....................................................UCACGAAUGGCUAGUGCACGAUu................... len:23 al:1102
....................................................UaACGAAUGGCUAGUGCACG...................... len:20 al:24
....................................................aCACGAAUGGCUAGUGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUgGUGCACGAUA................... len:23 al:3
....................................................UaACGAAUGGCUAGUGCA........................ len:18 al:10
....................................................UCACGAAUGGCcAGUGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUAGUGCAC....................... len:19 al:25
....................................................UCACGAAUGGCUAGUGCACGAUA................... len:23 al:38
....................................................UCACGAAUGGCUAGUGCAuGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGUGCACGAUuC.................. len:24 al:4
....................................................UCACGAAUGGCUAGUGCACGc..................... len:21 al:3
.....................................................CACGAAUGGCUAGUGCACGAU.................... len:21 al:4
.....................................................aACGAAUGGCUAGUGCACGAU.................... len:21 al:1
.....................................................CACGAAUGGCUAGUGCACGAUu................... len:22 al:1
......................................................ACGAAUGGCaAGUGCACGAU.................... len:20 al:1
......................................................ACGAAUGGCUAGUGCACGAUA................... len:21 al:5
......................................................ACGgAUGGCUAGUGCACGAU.................... len:20 al:1
......................................................ACGAAUGGCUAGUGCACGAa.................... len:20 al:2
......................................................ACGAAUGGCUAGUGCACGAU.................... len:20 al:92
......................................................ACGAAUGGCUAGUGCACGAUu................... len:21 al:77
......................................................ACGAgUGGCUAGUGCACGAU.................... len:20 al:1
......................................................uCGAAUGGCUAGUGCACGAU.................... len:20 al:1
......................................................ACGAAUGGCUAGUGCACGAUc................... len:21 al:4
......................................................ACGAAUGGCUAGUGCACc...................... len:18 al:2
......................................................ACGAAUGGCUAGUGCACGAc.................... len:20 al:11
......................................................ACGAAUGGCUAGUGCACu...................... len:18 al:9
......................................................ACGAAUGGCUAGUGCACGgU.................... len:20 al:3
......................................................ACGAAUGGCUAGUGCACG...................... len:18 al:4
......................................................ACGAAUGGCUAGUGCACa...................... len:18 al:2
......................................................ACGAAcGGCUAGUGCACGAUA................... len:21 al:1
......................................................ACGAAUGGCUAGUGCgCGAU.................... len:20 al:1
.......................................................CGAAUGGCUAGUGCACGAU.................... len:19 al:1
.......................................................CGAAUGGCUAGUGCACGAUu................... len:20 al:9
.......................................................CGAAUGGCUAGUGCACGAUc................... len:20 al:1
........................................................................AUACGUAGGCUUGAaCU..... len:17 al:1