Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_590:199370-199465 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_6905.ps.pdf
Locus Name: Cluster_6905
AUGGAUUGAGAAGCUCACGUUUCGUACGCUAGUCCUUCGAUAAAGCGUUUCGUUUCACGAAUGGCUAGCGCACGUUUUGUGGGCUUUCAUACAACA
.((...(((((.(((((((...(((.((((((((.((((...(((((...)))))..)))).)))))))).)))...))))))))))))..))... (-37.40)
..GGAUUGAGAAGCUCACGUUU.......................................................................... len:20 al:4
.....................cCGUACGCUAGUCCUUCGAUA...................................................... len:21 al:1
......................CGUACGCUAGUCCUUCGAUAAu.................................................... len:22 al:12
......................CGUACGCUAGUCCUUCGAUAAAu................................................... len:23 al:53
......................CGUACGCUAGUCCUUCGAUA...................................................... len:20 al:27
......................CGUACGCUAGUCCUcCGAUAA..................................................... len:21 al:1
......................CGUAuGCUAGUCCUUCGAUAAA.................................................... len:22 al:1
......................CGUACGCUAGcCCUUCGAU....................................................... len:19 al:2
......................CGUACGCUAGUCCUUCGAUAAAc................................................... len:23 al:2
......................CGUACGCUgGUCCUUCGAU....................................................... len:19 al:3
......................CGUACGCUAGUCCUUCGAUAAA.................................................... len:22 al:94
......................CGUACGCUAGUCCUUCGAUAAAGu.................................................. len:24 al:14
......................CGUACGCUAGUCCUUCGAUAu..................................................... len:21 al:5
......................CGUACGCUAGUCCUUCGAUAAg.................................................... len:22 al:1
......................CGUACGCUAGUCCUUCGAUAAAuC.................................................. len:24 al:3
......................CGUACGCUAGUCCUUCGAc....................................................... len:19 al:8
......................CGUACGCUAGUCCUUC.......................................................... len:16 al:1
......................CGUACGCUAGUCCUUCGAU....................................................... len:19 al:51
......................CGUACGCUAGUCCUUCGAUAA..................................................... len:21 al:41
......................CGUACGCUAGUCCcUCGAUAAA.................................................... len:22 al:2
......................CGUACGCUAGUCCUUCGAUu...................................................... len:20 al:31
......................CGUACGCUAGUCCUUCGAUc...................................................... len:20 al:1
......................CGUACGCUAGUCCUUCGA........................................................ len:18 al:1
......................CGUACGCUAGUCCUUCGAUAAAGa.................................................. len:24 al:4
......................CGUACGCUAGUCCUUCGAUAAAG................................................... len:23 al:49
......................CGUACGCUAGUCCUUCGAUAAAa................................................... len:23 al:10
......................CGUACGCUAGUCCUUCGgUAAAG................................................... len:23 al:1
......................CGUACGCUAGUCCcUCGAUAAAG................................................... len:23 al:1
......................CGUACGCUAGUCCUUCGAUAAAGC.................................................. len:24 al:5
......................CGUACGCcAGUCCUUCGAUAAAG................................................... len:23 al:1
.......................GUACGCUAGUCCUUCGAU....................................................... len:18 al:3
.......................GUACGCUAGUCCUUCGAUAAAu................................................... len:22 al:5
.......................GUACGCUAGUCCUUCGAUu...................................................... len:19 al:2
........................UACGCUAGUCCUUCGAUA...................................................... len:18 al:9
....................................................UUUCACGAAUGGCUAGCGCACG...................... len:22 al:1
....................................................UUUCACGAAUGGCUAGCGCACGU..................... len:23 al:3
....................................................UUcCACGAAUGGCUAGCGCACGU..................... len:23 al:1
......................................................UCACGgAUGGCUAGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCACGUUU................... len:23 al:45
......................................................UCACaAAUGGCUAGCGCACGUUU................... len:23 al:1
......................................................UCACGAAUGGCUAGCGCA........................ len:18 al:15
......................................................UCACGAAUGGCUAGCGCACu...................... len:20 al:16
......................................................UCACGAAUGGCUAGCGCgCGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCAuGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGCGCACGaUU................... len:23 al:450
......................................................UCACGAAUGGCUAGCGCAC....................... len:19 al:55
......................................................UCACGAAUGGCUAGCGCACGUa.................... len:22 al:6
......................................................UCACGAAUGGCUAGCGCACa...................... len:20 al:7
......................................................UCACGAAUGGCUAGCGCACGgU.................... len:22 al:3
......................................................UCACGAAUGGCUAGCGCACG...................... len:20 al:46
......................................................UCACGAAUGGCUAGCGCACuU..................... len:21 al:1
......................................................UCACGAAUGGCUAGCGCACGcUU................... len:23 al:2
......................................................UCACGAAUGGCUAGCGCACc...................... len:20 al:1
......................................................UCACGAAUGGCUAGCGCACGUUc................... len:23 al:3
......................................................UCACaAAUGGCUAGCGCACGUU.................... len:22 al:1
......................................................UCACGAAUGGCUAGC........................... len:15 al:4
......................................................UCACGAAUGGCUAGCGCACGUgU................... len:23 al:2
......................................................UCACGAAUGGCUAGCGCACGUUUc.................. len:24 al:1
......................................................UCACGAAUGGCUAGCGCACGUc.................... len:22 al:18
......................................................UCACGAAUGGCUAGCGCAu....................... len:19 al:13
......................................................UCACGAAUGGCUAGCGCACGgUU................... len:23 al:5
......................................................UCACGAAUGGCUAGCGCACGaUUU.................. len:24 al:24
......................................................UCACGAAUGGCUAGCGCACGUU.................... len:22 al:117
......................................................UCACGAAUGGCUAGCGCACGUUUU.................. len:24 al:8
......................................................UCACGAAUGGCUAGCGCACGU..................... len:21 al:19
......................................................UCACGAAUGGCUAGCGCACGUg.................... len:22 al:2
.......................................................CACGAAUGGCUAGCGCACGaUU................... len:22 al:6
.......................................................CACGAAUGGCUAGCGCAC....................... len:18 al:1
........................................................ACGAAUGGCUAGCGCACGUU.................... len:20 al:2
........................................................ACGAAUGGCUAGCGCACuUU.................... len:20 al:2