Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_590:199106-199199 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_6904.ps.pdf
Locus Name: Cluster_6904
GGAUUAAGAAGCUCACGUUUCGCGCGCUAGUCCUUCGGUAAAUUGUUUCGUUUCACGAAUGGCUAGCGCACGAUACGUGGGCUUUCAUACAACA
.......(((((((((((.(((.(((((((((.((((..((((......))))..)))).))))))))).))).)))))))))))......... (-44.80)
GGAUUAAGAAGCUCACuUUU.......................................................................... len:20 al:4
.GAUUAAGAAGCUCACGUUU.......................................................................... len:19 al:1
.GAUUAAGAAGCUCACuUUU.......................................................................... len:19 al:64
....................CGCGCGCUAGUCCcUCGGUAA..................................................... len:21 al:1
....................CGCGCGCUAGUCCUUCGGUAAA.................................................... len:22 al:17
....................CGCGCGCUAGUCCUUCGGU....................................................... len:19 al:21
....................CGCGCGCUAGUCCcUCGGU....................................................... len:19 al:1
....................CGCGCGCUAGUCCUUCGGUAAAU................................................... len:23 al:7
....................CGCGCGCUAGUCCUUCGGUA...................................................... len:20 al:11
....................CGCGCGCUAGUCCUUuGGUAAAUU.................................................. len:24 al:2
....................CGCGCGCUAGUCCUUCGGUAA..................................................... len:21 al:14
....................CGCGCGCUAGUCCUUCGGUAAAUUGUUUCG............................................ len:30 al:1
....................CGCGCGCUAGcCCUUCGGU....................................................... len:19 al:1
....................CGCGCGCUgGUCCUUCGGU....................................................... len:19 al:1
....................CGCGCGCUAGUCCUUCGGUAAAUU.................................................. len:24 al:3
....................CaCGCGCUAGUCCUUCGGUAAA.................................................... len:22 al:1
....................CGCGCGCUAGUCCUUCGGUAAAcU.................................................. len:24 al:1
....................CGCGCGCUAGUCCUUCGGUAAu.................................................... len:22 al:1
....................CGCGCGCUAGUCCUUCGGUAAAUc.................................................. len:24 al:1
....................CGCaCGCUAGUCCUUCGGUAAA.................................................... len:22 al:1
.....................GCGCGCUAGUCCUUuGGUAAAU................................................... len:22 al:1
...........................................UGUUUCGUUUCACGAAUGGCUAGCGCACGAU.................... len:31 al:4
...........................................UGUUUCGUUUCACGAAUGGCUAGCGCACGAc.................... len:31 al:1
................................................CGUUUCACGAAUGGCUAGCGCACGAU.................... len:26 al:1
..................................................UUUCACGAAUGGCUAGCG.......................... len:18 al:1
..................................................UUUCACGAAUGGCUAGCGCACGc..................... len:23 al:1
..................................................UUUaACGAAUGGCUAGCGCACG...................... len:22 al:1
..................................................UUUCACGAAUGGCUAGCGCACG...................... len:22 al:4
...................................................UUCACGAAUGGCUAGCGCACG...................... len:21 al:1
....................................................UCACGAAUGGCUAGCGCAa....................... len:19 al:3
....................................................UCACGAAUaGCUAGCGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUAGCGCgCGAU.................... len:22 al:3
....................................................UCACGAAUGGCUAGCGCACGgU.................... len:22 al:12
....................................................UCACGAAUGGuUAGCGCACG...................... len:20 al:1
....................................................cCACGAAUGGCUAGCGCACGA..................... len:21 al:1
....................................................UCAaGAAUGGCUAGCGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGCGCAC....................... len:19 al:122
....................................................UCACGAAUGGCUAGCGCACGAc.................... len:22 al:51
....................................................UCACGAAUGGCUAGCGCACGAUg................... len:23 al:3
....................................................UCACGAAUGGCUAGCGCACGAUAu.................. len:24 al:4
....................................................UCACGAAUGGCUAGCGCACGAg.................... len:22 al:5
....................................................UCACGAgUGGCUAGCGCACGAU.................... len:22 al:2
....................................................UCACGAAUGGCUAGCGCACu...................... len:20 al:40
....................................................UCACGAAUGGCUgGCGCACGA..................... len:21 al:2
....................................................UCACGAAUGGCUAGCGCACa...................... len:20 al:21
....................................................UCACGAAUGGCUAGCGCgCG...................... len:20 al:1
....................................................UCACGAAUGGCUAGCGCACGAUA................... len:23 al:22
....................................................UCgCGAAUGGCUAGCGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGCGCACGcU.................... len:22 al:1
....................................................UCgCGAAUGGCUAGCGCACG...................... len:20 al:1
....................................................UCgCGAAUGGCUAGC........................... len:15 al:2
....................................................UCACGAAUGGCUAGCGCg........................ len:18 al:1
....................................................UCACGAAUGGCUAGCGCACcA..................... len:21 al:1
....................................................UCACGAAUGGCUAGCGCACGA..................... len:21 al:26
....................................................cCACGAAUGGCUAGCGCACGAU.................... len:22 al:5
....................................................UCACGAAUGGCUAGCGCAuGAU.................... len:22 al:1
....................................................UCACGAAcGGCUAGCGCA........................ len:18 al:1
....................................................UCACGAAUGGCUAGCGCACGAU.................... len:22 al:796
....................................................UCACGAAUGGCUgGCGCAC....................... len:19 al:1
....................................................UCACGAAUGGCUAGCaCACG...................... len:20 al:1
....................................................UgACGAAUGGCUAGCGCACG...................... len:20 al:1
....................................................UCACGAAUGGCUAGCGCu........................ len:18 al:1
....................................................UCACGAAcGGCUAGCGCACGAU.................... len:22 al:2
....................................................UCACGAAUGGCUAGCGCACGAUuC.................. len:24 al:2
....................................................UCACGAAUGGCUAGCGCAu....................... len:19 al:34
....................................................UCACGAAUGGCUAGCGCACGAUc................... len:23 al:118
....................................................UCACaAAUGGCUAGCGCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGCcCAC....................... len:19 al:1
....................................................UCACGAAUGGCUAGCGuACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGCGCACc...................... len:20 al:9
....................................................cCACGAAUGGCUAGCGCAC....................... len:19 al:1
....................................................UCACGAAUGGCUAGCG.......................... len:16 al:1
....................................................UCACGAAUGGCUgGCGCACG...................... len:20 al:2
....................................................UCACGAAUGGCUAGCGC......................... len:17 al:3
....................................................UCACGAAUGGCUAGCGCACGuUA................... len:23 al:1
....................................................UCACGAAUGGCUAGCuCACGAU.................... len:22 al:1
....................................................UCACGAAUGGCUAGCGCACGAUAC.................. len:24 al:1
....................................................UCACGAAUGGCUgGCGCACGAU.................... len:22 al:4
....................................................UCACGAAUGGCUAGCGCACG...................... len:20 al:106
....................................................UCACGAAUGGCUAGCGCACGAa.................... len:22 al:1
....................................................UCACGAAUGGCUAGCGu......................... len:17 al:1
....................................................UCACGAAUGGCUAGCGCACGc..................... len:21 al:4
....................................................UCgCGAAUGGCUAGCGCAC....................... len:19 al:1
....................................................UaACGAAUGGCUAGCGCAC....................... len:19 al:2
....................................................UCACGAAUGGCUAGCGCACGAUu................... len:23 al:968
....................................................UCACGAAUGGCUAGCGCA........................ len:18 al:38
....................................................UCACGAAUGGCcAGCGCACGAU.................... len:22 al:2
....................................................UCACGgAUGGCUAGCGCACG...................... len:20 al:1
....................................................UCACGgAUGGCUAGCGCA........................ len:18 al:1
....................................................UCACGAAUGGCUAGC........................... len:15 al:17
....................................................UCACGgAUGGCUAGCGCACGAU.................... len:22 al:1
....................................................UCACGAAUGcCUAGCGCA........................ len:18 al:1
....................................................UCAuGAAUGGCUAGCGCAC....................... len:19 al:1
.....................................................CACGAAUGGCUAGCGCACGAUu................... len:22 al:18
.....................................................CACGAAUGGCUAGCGCACGA..................... len:20 al:3
.....................................................CACGAAUGGCUAGCGCACGAc.................... len:21 al:1
.....................................................CACGAAUGGCUAGCGCAC....................... len:18 al:5
.....................................................CACGAAUGGCUAGCGCACu...................... len:19 al:2
.....................................................CACGAAUGGCUAGCGCACGAU.................... len:21 al:13
.....................................................CACGAAUGGCUAGCGCACc...................... len:19 al:1
.....................................................CACGAAUGGCUAGCGCACG...................... len:19 al:1
......................................................ACGAAUGGCUAGCGCACGAUu................... len:21 al:4
......................................................ACGAAUGGCUAGCGCACGAUc................... len:21 al:1
......................................................ACGAAUGGCUAGCGCACGAU.................... len:20 al:1
........................................................GAAUGGCUAGCGCACGAUc................... len:19 al:1
........................................................GAAUGGCUAGCGCAu....................... len:15 al:1
........................................................GAAUGGCUAGCGCACGAUu................... len:19 al:2
..........................................................................ACGUGGGCUUUCAUACAACc len:20 al:6
..........................................................................ACGUGGGCUUUCAUACA... len:17 al:1
..........................................................................ACGUGGGCUUcCAUACAA.. len:18 al:1
..........................................................................ACGUGGGCUUUCAUACAACA len:20 al:25
..........................................................................ACGUGGGCUUUCAUACAACu len:20 al:66
..........................................................................ACGUGGGCUUUCAUACAA.. len:18 al:54
..........................................................................ACGUGGGCUUUCAUACAACg len:20 al:2
..........................................................................ACGUGGGCUUUCAUACAAC. len:19 al:13
...........................................................................CGUGGGCUUUCAUACAACA len:19 al:2