Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_16:383386-383478 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_589.ps.pdf
Locus Name: Cluster_589
UGAUCUUGGCAUGCCUGUACUUAAGGGCCUGGGAGAGAGAAGUUUUUCUCUUCUCUCUCCAAAUCCCUUAGGUUUAUUCAUGCCUCUGUUUAC
.......((((((..((.(((((((((....(((((((((((.......)))))))))))....))))))))).))..))))))......... (-43.00)
UGAUCUUGGCAUGCCUGUAC......................................................................... len:20 al:50
UGAUCUUGGCAUGCCUGUAu......................................................................... len:20 al:10
UGAUCUUGGCAcGCCUGUAC......................................................................... len:20 al:1
UGAUCUUGGuAUGCCUGUAC......................................................................... len:20 al:176
UGAUCUUGGuAUGCCUGU........................................................................... len:18 al:2
UGAUCUUGGCAUGCCUGUACU........................................................................ len:21 al:5
.GAUCUUGGuAUGCCUGUAC......................................................................... len:19 al:1
.GAUCUUGGCAUGCCUGUAC......................................................................... len:19 al:1
....................UUAAGGGCCUGGGAGAGAGAcG................................................... len:22 al:1
....................UUAAGGGCCUGGGgGAGAGAAG................................................... len:22 al:7
....................UUAAGGGCCUGGGAGAGAGAuG................................................... len:22 al:1
....................UUAuGGGCCUGGGAGAGAGA..................................................... len:20 al:3
....................UUAAGGGCCUGGGAGuGAGAAGU.................................................. len:23 al:3
....................UUAAGGGCCUGGGAGAGAGAc.................................................... len:21 al:2
....................cUAAGGGCCUGGGAGAGAGAAG................................................... len:22 al:3
....................UUAAGGGCCUGGGAGAGAGAAGUaU................................................ len:25 al:2
....................UUAAGGGCCUGGGAGAGAGg..................................................... len:20 al:9
....................UUAuGGGCCUGGGAGAGAGAAG................................................... len:22 al:1
....................UUAgGGGCCUGGGAGAGAGA..................................................... len:20 al:2
....................UUAAGGGCCUGGGAGAGAGAAcU.................................................. len:23 al:3
....................UUAAGGGCCUGGGAGA......................................................... len:16 al:5
....................UUAAGGGCCUGGGAGc......................................................... len:16 al:2
....................UUAAGGGCCUGGGAGAGAGAAc................................................... len:22 al:6
....................UUAAGGGCCUGGGAGAGgGAAG................................................... len:22 al:7
....................UUAAGGGCCUGGGAGAGAGgAGU.................................................. len:23 al:4
....................UUAAGGGCCUGGGuGAGAGAAG................................................... len:22 al:1
....................UUAAGGGCCUGGGAGAGAGAAa................................................... len:22 al:17
....................UUAAGGGCCUGGGgGAGAGAAGU.................................................. len:23 al:6
....................UUAAGGGCCUGGGAGAGu....................................................... len:18 al:16
....................UUAgGGGCCUGGGAGAGAGAAG................................................... len:22 al:2
....................UUAAGGGCCUGGGAGAGAGAAGUg................................................. len:24 al:1
....................UUAAGGGCCUGGGAGAGAGAAuUUUU............................................... len:26 al:1
....................UUAAGGGCCUGGGgGAGAGAA.................................................... len:21 al:1
....................UUAAGGGCCUGGGAGAGAGAAuUU................................................. len:24 al:1
....................UUAAGGGCCUGGGAGAGAGAAGUUa................................................ len:25 al:1
....................UUAAGGGCCUGGGgGAGAGA..................................................... len:20 al:4
....................UUAAGGGCCUGGGAGAGAGAAGa.................................................. len:23 al:6
....................UUAAaGGCCUGGGAGAGAGAAG................................................... len:22 al:2
....................UUAAGGGCuUGGGAGAGAGA..................................................... len:20 al:2
....................UUgAGGGCCUGGGAGAGAGAAGU.................................................. len:23 al:1
....................UUAAGGGCCUGGGAGAGAu...................................................... len:19 al:1
....................UUAAGGGCCUGGGAGAGAGAA.................................................... len:21 al:25
....................UUAAGGGCCUGGGAGAGAa...................................................... len:19 al:1
....................UUAAGGGCCcGGGAGAGAG...................................................... len:19 al:1
....................UUAAGGGCCUGGGAGAGAGAAGUUUU............................................... len:26 al:4
....................UUAAGGGCCUGGGAGAGA....................................................... len:18 al:27
....................UUAAGGGCCUGGGAGAGAGAAGUU................................................. len:24 al:17
....................UUAAGGGCCUGGGAGAGAGA..................................................... len:20 al:791
....................UUAAGGGCCUGGGAGAGAG...................................................... len:19 al:24
....................UUAAGGGCCUGGGAGgGAGAAGU.................................................. len:23 al:2
....................UUAAGGGCCUGGGAGAG........................................................ len:17 al:6
....................UUAAaGGCCUGGGAGAGAGA..................................................... len:20 al:1
....................UUAAGGGCCUGGGAGAGAGAAGUUUUU.............................................. len:27 al:4
....................UUAAGGGCCUGGGAGAGAuA..................................................... len:20 al:4
....................UUAAGGGCuUGGGAGAGAGAAG................................................... len:22 al:1
....................UUAAGGGCCUGGGAGAGAGAAuU.................................................. len:23 al:50
....................UUAAGGGCCUGGGAGAGAGc..................................................... len:20 al:2
....................cUAAGGGCCUGGGAGAGAGA..................................................... len:20 al:4
....................UUAAGGGCCcGGGAGAGAGAAG................................................... len:22 al:2
....................UUAAGGaCCUGGGAGAGAGAAG................................................... len:22 al:4
....................UUAAGGGCCUGGGAGAGAaAAG................................................... len:22 al:1
....................UUAAGGGCCUGGGAGAGAGAgG................................................... len:22 al:8
....................UUAAGGGCCUGGGAGAGAGuAG................................................... len:22 al:2
....................UcAAGGGCCUGGGAGAGAGA..................................................... len:20 al:3
....................UUAAGGGCCUGGGAGAGAc...................................................... len:19 al:1
....................UUAAGGGCCUGGGAGAGAGu..................................................... len:20 al:43
....................UUAAGGGCCUGGGAGAGgGA..................................................... len:20 al:5
....................UUAAGGGCCUGGGAGAGAGAAGU.................................................. len:23 al:455
....................UUAAGGGCCUGGGAGAGAGAAGg.................................................. len:23 al:3
....................UcAAGGGCCUGGGAGAGAGAAGU.................................................. len:23 al:2
....................UUAAGGGCCUGGGAGAGAGAAGUa................................................. len:24 al:7
....................UUgAGGGCCUGGGAGAGAGA..................................................... len:20 al:1
....................UUAAGGGCCUGGGAGAGAGAAGUUUUUuU............................................ len:29 al:1
....................UaAAGGGCCUGGGAGAGAGAAG................................................... len:22 al:1
....................UUAAuGGCCUGGGAGAGAGA..................................................... len:20 al:1
....................UUAAGGGCCUGGGAGAGAGAAGaU................................................. len:24 al:1
....................UUAAGGuCCUGGGAGAGAGAAG................................................... len:22 al:1
....................UUAAGGGCCUGGGAGAGAGAu.................................................... len:21 al:4
....................UUAAGGGCCUaGGAGAGAGAAGU.................................................. len:23 al:1
....................UUAAGGGCCUGGGAGgGAGA..................................................... len:20 al:4
....................UUAAGGGCCUGGGAGAGgGAAGU.................................................. len:23 al:1
....................cUAAGGGCCUGGGAGAGAGAAGU.................................................. len:23 al:2
....................UUAAGaGCCUGGGAGAGAGA..................................................... len:20 al:1
....................UUAAGGGCCUGGGAGAGc....................................................... len:18 al:4
....................UUAAGGGCCUGGGAGAGAGAAGUUU................................................ len:25 al:5
....................UUAAGGGuCUGGGAGAGAGA..................................................... len:20 al:2
....................UcAAGGGCCUGGGAGAGAGAAG................................................... len:22 al:1
....................UUAAGGGCgUGGGAGAGAGAAG................................................... len:22 al:2
....................UUAAGGGCCUGGGAGAGAGAAG................................................... len:22 al:1239
....................UUAAGGGCCUGGGAGAGg....................................................... len:18 al:1
....................UUAAGGGCCUGaGAGAGAGAAG................................................... len:22 al:1
....................UUAAGGaCCUGGGAGAGAGA..................................................... len:20 al:1
....................UaAAGGGCCUGGGAGAGAGA..................................................... len:20 al:1
....................UUAAGGGCCUGGGAG.......................................................... len:15 al:3
....................UUAAGGGCCUGGGAGgGAGAAG................................................... len:22 al:7
....................UUAAGGcCCUGGGAGAGAGA..................................................... len:20 al:1
....................UUAAGGGCCUGGGAGAGAGAAu................................................... len:22 al:131
....................UUAAGGGCCUGGGAGAGAGgAG................................................... len:22 al:6
....................UUAAGGGCCcGGGAGAGAGA..................................................... len:20 al:1
....................UUAgGGGCCUGGGAGAGAGAAGU.................................................. len:23 al:1
....................UUAAGGGCCUaGGAGAGAGAAG................................................... len:22 al:1
....................UUAAGGGCCUGGGAGAGAGAAGc.................................................. len:23 al:47
.....................UAAGGGCCUGGGAGAGAGAAG................................................... len:21 al:9
.....................UAAGGGCCUGGGAGAGAGA..................................................... len:19 al:1
.....................UuAGGGCCUGGGAGAGAGAAG................................................... len:21 al:1
.....................UAAGGGCCUGGGAGAGAGAAGc.................................................. len:22 al:2
.....................UAAGGGCCUGGGgGAGAGAAG................................................... len:21 al:1
.....................UAAGGGCCUGGGAGAGAGAgGU.................................................. len:22 al:1
.....................UAAGGGCCUGGGAGAGAGAAGU.................................................. len:22 al:15
.....................UAAGGGCCUGGGAGAGAGAAGUU................................................. len:23 al:1
.....................UAAGGGCCUGGGAGAGgGA..................................................... len:19 al:1
......................AAGGGCCUGGGAGAGAGAAG................................................... len:20 al:1
........................GGGCCUGGGAGAGAGAAGU.................................................. len:19 al:3
........................................AGUUUUUCUCUUCUCUCUCCAAAUCCCU......................... len:28 al:2
.........................................GUUUUUCUCUUCUCUCUCCAAAUCCCUUAGa..................... len:31 al:2
.........................................GUUUUUCUCUUCUCUCUCCAAAUCCCUUAGG..................... len:31 al:2
.........................................GUUUUUCUCUUCUCUCUCCAAAUCCCUU........................ len:28 al:2
..........................................UUUUUCUCUUCUCUCUCCAAAUCCCUUAGGc.................... len:31 al:1
..........................................UUUUUCUCUUCUCUCUCCAAAUCCCUUAGGU.................... len:31 al:7
...........................................UUUUCUCUUCUCUCUCCAAAUCCCUUAGGc.................... len:30 al:1
...........................................UUUUCUCUUCUCcCUCCAAAUCCCUU........................ len:26 al:3
...........................................UUUUCUCUUCUCUCUCCAAAUCCCUU........................ len:26 al:1
...........................................UUUUCUCUUCUCUCUCCAAAUCCCUUAGG..................... len:29 al:2
...........................................UUUUCUCUUCUCUCUCCAAAUCCCUUAGGU.................... len:30 al:1
...........................................UUUUCUCUUCUCUCUCCAAAUCCCUUAGa..................... len:29 al:1
...............................................CUCUUCUCUCUCCAAAUCCCUUAGG..................... len:25 al:2
..................................................UUCUCUCUCCAAAUCCCUUAGG..................... len:22 al:32
..................................................UUCUCUCUCCAAAUCCCUUAGc..................... len:22 al:2
..................................................UUCUCUCUCCAAAUCCCUUAG...................... len:21 al:7
..................................................UUCUCUCUCCAAAUCCuUUAGG..................... len:22 al:1
..................................................UUCUCUCUCCAAAUCCCUU........................ len:19 al:5
..................................................UUCUCUCUCCAAAUCCCUc........................ len:19 al:1
..................................................UUCUCUCUCCAAAUCCCUUAGGUU................... len:24 al:2
..................................................UUCUCUCUCCAAAUCCCgU........................ len:19 al:1
..................................................UUCUCUCUCCAAAUCCCUUAGa..................... len:22 al:5
..................................................UUCUCUCUCCAAAUCCCUUA....................... len:20 al:1
...................................................UCUCUCUCCAAAcCCCUUAGG..................... len:21 al:1
...................................................UCUCUCUCCAgAUCCCUUAGGU.................... len:22 al:8
...................................................UCcCUCUCCAAAUCCCUUAGG..................... len:21 al:1
...................................................UCUCUCUCCAAAUCCCUUAGGUU................... len:23 al:67
...................................................UCUCUCUCCAAAUCCaUUAGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAUCCCUUAu...................... len:20 al:3
...................................................UCUCcCUCCAAAUCCCUUAGG..................... len:21 al:1
...................................................UCcCUCUCCAAAUCCCUUA....................... len:19 al:1
...................................................UCUCUCUCCAAAUuCCUUAGGU.................... len:22 al:1
...................................................UCUCUCUCCAAAUCCCUUAGGgU................... len:23 al:1
...................................................UuUCUCUCCAAAUCCCUUAGGU.................... len:22 al:1
...................................................UCUCUCUCCAAAUCCCUUAGGg.................... len:22 al:4
...................................................UCUCUaUCCAAAUCCCUUAGGUUU.................. len:24 al:5
...................................................UCUCUCUCCAAAUCCCUUAGaU.................... len:22 al:1
...................................................UCUCUCUCCAAAUCCCUUgGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAUCCCUUgGG..................... len:21 al:1
...................................................UCUCUCUCCAAAUCCCUUAGGUc................... len:23 al:3
...................................................UCUCUCUCCAAAUCCCUU........................ len:18 al:6
...................................................UCUCUCUCCAAAUCCCUUAGu..................... len:21 al:12
...................................................UCUCUCUCCAAgUCCCUUAGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAUCCCUUAG...................... len:20 al:9
...................................................cCUCUCUCCAAAUCCCUUAGG..................... len:21 al:1
...................................................UCcCUCUCCAAAUCCCUUAGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAUCCCUUAGG..................... len:21 al:64
...................................................UCUCUCUCCAAAUCCCUUAGa..................... len:21 al:11
...................................................UCUCUCUCCAAAUCCCUUAGGa.................... len:22 al:4
...................................................UCUCUCUCCAAAUCCCcUAGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAUCCCUUAGGUUa.................. len:24 al:1
...................................................UCUCUCUCCAAAUCCCUUAcG..................... len:21 al:1
...................................................cCUCUCUCCAAAUCCCUUAGGU.................... len:22 al:2
...................................................UCUCcCUCCAAAUCCCUUAGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAUCCCUUAGGc.................... len:22 al:29
...................................................UCUCUCUCCAAAUCCCUUuGGU.................... len:22 al:2
...................................................UCUCUCUCCAAAcCCCUUAGGU.................... len:22 al:1
...................................................UCUCUCUCCAAAUCCCUUAGGgUU.................. len:24 al:1
...................................................UCUCcCUCCAAAUCCCUU........................ len:18 al:1
...................................................UCUCUCUCCgAAUCCCUU........................ len:18 al:1
...................................................UCUCUCUCCAAAUCCCUUAGGUa................... len:23 al:27
...................................................UCUCUCUCCAAAUCCCUUAGGU.................... len:22 al:231
...................................................UCUCUCUCCAAAUCCCUUA....................... len:19 al:2
...................................................UCUCUCUCCAAAUCCCUUAGuU.................... len:22 al:5
...................................................UCUCUCUCCgAAUCCCUUAGGU.................... len:22 al:3
...................................................UCUCUCUCCAAAUCCCUcAGG..................... len:21 al:1
....................................................CUCUCUCCAAAUCCCUUAGG..................... len:20 al:1
.....................................................UCUCUCCAAAUCCCUUAGGU.................... len:20 al:4
.....................................................UCUCUCCAAAUCCCUUAGGc.................... len:20 al:1
.........................................................................UUAUUCAUGCCUCUGUUU.. len:18 al:26
.........................................................................UUAUUCAUGCCcCUGUUU.. len:18 al:1
.........................................................................UUAUUCAUGCCUCUGUUc.. len:18 al:3