Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_334:153554-153646 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_4735.ps.pdf
Locus Name: Cluster_4735
AGAUUAUGCAAUAUUUUCUUUGCAGGUACAGUUAUAAGGUCCCCUUGGUGGACCUUAUAACUGUACCUGCCAAGAAAGCUGAGCAUUUAAUUC
.....((((....(((((((.((((((((((((((((((((((....).))))))))))))))))))))).)))))))....))))....... (-46.90)
...................UUGCAGGUACAGUUAUAAG....................................................... len:19 al:3
...................cUGCAGGUACAGUUAUAAGGUC.................................................... len:22 al:1
...................UUGCAGGUACAGUUAUA......................................................... len:17 al:2
...................UUGCAGGUACAGUUAUAu........................................................ len:18 al:7
...................UUGCAGGUACAGUUAUAAGGUCC................................................... len:23 al:23
...................UUGCAGGUACAGUUAUAAGa...................................................... len:20 al:2
...................UUGCAGGUACAGUUAUAAGGUCa................................................... len:23 al:4
...................UUGCAGGUACAGUUAUAAGGUCCu.................................................. len:24 al:4
...................UUGCAGGUACAGUUAUAAGGc..................................................... len:21 al:6
...................UUGCAGGUACAGUUAUAAGGUC.................................................... len:22 al:46
...................UUGCAGGUACAGUUAUAAGGUCu................................................... len:23 al:18
...................UUGCAGGUACAGUUAUAAu....................................................... len:19 al:8
...................UUGCAGGUACAGUUAUAAGG...................................................... len:20 al:29
...................UUGCgGGUACAGUUAUAAGG...................................................... len:20 al:1
...................UUGCAGGUACAGUUAUAAGGUu.................................................... len:22 al:2
...................UUGCAGGUACAGUUAUAAGc...................................................... len:20 al:1
...................UUGCAGGUACAGUUAUAAGGU..................................................... len:21 al:47
...................UUGCAGGUACAGcUAUAAGG...................................................... len:20 al:2
...................UUGCAGGUACAGUUAUAAGGa..................................................... len:21 al:1
...................UUGCAGGUACAGUUAUAA........................................................ len:18 al:5
....................UGCAGGUACAGUUAUAAGGUCa................................................... len:22 al:9
....................UGCAGGUACAGUUAU.......................................................... len:15 al:1
....................UGCAGGUACAGUUAUAAGGc..................................................... len:20 al:10
....................UGCAGGUACAGUUAUAAGGUC.................................................... len:21 al:73
....................UGCAGGUACAGUUAUAAGaU..................................................... len:20 al:5
....................UGCAGGUACAGUUAUAAc....................................................... len:18 al:6
....................UGCAGGUACAGUUAUAAGGUu.................................................... len:21 al:7
....................UGCAGGUACAGUUAUAAu....................................................... len:18 al:27
....................UGCcGGUACAGUUAUAAGG...................................................... len:19 al:2
....................UGCAGGUACAGUUAUAAGGUCCa.................................................. len:23 al:1
....................UGCAGGUACAGUUAUAAGu...................................................... len:19 al:8
....................UGCAGGUACAGUUAUAAGG...................................................... len:19 al:56
....................UGCAGGUACAGUUAUAAGGUCCC.................................................. len:23 al:2
....................UGCAGGUACgGUUAUAAGGUCC................................................... len:22 al:1
....................UGCAGGUACAGUUAUAAGGUCu................................................... len:22 al:59
....................UGCgGGUACAGUUAUAAGG...................................................... len:19 al:1
....................UGCAGGUACAGUUAUAAGGg..................................................... len:20 al:2
....................UGCAGGUACAGUUAUAAG....................................................... len:18 al:26
....................UGCAGGUACAGUcAUAAGGU..................................................... len:20 al:1
....................UGCAGGUgCAGUUAUAAGGUC.................................................... len:21 al:2
....................UGCAGGUgCAGUUAUAAGGUCC................................................... len:22 al:1
....................UGCAGGUACgGUUAUAAGGU..................................................... len:20 al:1
....................UGCgGGUACAGUUAUAAGGU..................................................... len:20 al:2
....................UGCAGGUACAGUUAUAgGG...................................................... len:19 al:2
....................UGCAGGUACAGUUAUAAGGUCg................................................... len:22 al:1
....................UGCAGGcACAGUUAUAAGG...................................................... len:19 al:1
....................UGCAGGUACAGUUAUAAGa...................................................... len:19 al:1
....................UGCAGGUACAGUUAUAAGGUCC................................................... len:22 al:71
....................UGCAGGUACAGUUAUAAGGUa.................................................... len:21 al:2
....................UGCAGGUACAGUUAUAAGGa..................................................... len:20 al:2
....................UGCAGGUACAGUUAUAAGGU..................................................... len:20 al:75
.....................GCAaGUACAGUUAUAAGGU..................................................... len:19 al:1
.....................GCAGGUACAGUUAUAAGGUu.................................................... len:20 al:2
.....................GCAGGUACAGUUAUAAGu...................................................... len:18 al:1
.....................GCAGGUACAGUUAUAAGGU..................................................... len:19 al:1
.....................GCAGGUACAGUUAUAAGGUCCC.................................................. len:22 al:1
.....................GCAGGUACAGUUAUAAGGUCu................................................... len:21 al:2
......................CAGGUACAGUUAUAAGGU..................................................... len:18 al:1
.......................AGGUACAGUUAUAAGGUC.................................................... len:18 al:1
.........................................CCCUUGGUGGACCUUAUAACUGUACCUGCCA..................... len:31 al:2
.........................................CCCUUGGUGGACCUUAUAACUGUACCUGCCc..................... len:31 al:1
............................................UUGGUGGACCUUAUAACUGUACu.......................... len:23 al:1
............................................UUGGUGGACCUUAUAACUGU............................. len:20 al:6
..................................................GACCUUAUAACUGUACCUGu....................... len:20 al:6
..................................................GACCUUAUAACUGUACCa......................... len:18 al:1
..................................................GACCUUAUAACUGUACCUGCu...................... len:21 al:1
..................................................GACCUUAUAACUGUACCUGCCAc.................... len:23 al:3
..................................................GACCUUAUAACUGUACCU......................... len:18 al:8
..................................................GACCUUAUAACUGUACCUGCCA..................... len:22 al:5
..................................................GACCUUAUAACUGUACCUGCCAu.................... len:23 al:4
..................................................GACCUUAUAACUGUACCc......................... len:18 al:1
..................................................GACCUUAUAACUGUACCUGC....................... len:20 al:12
..................................................GACCUUAUAACUGUACCUGCCu..................... len:22 al:1
..................................................GACCUUAUAACUGUACCUGCC...................... len:21 al:7
..................................................GACCUUAUAACUGUA............................ len:15 al:1
...................................................ACCUUAUAACUGUACCUGCCAA.................... len:22 al:38
...................................................ACCUUAUAACUGUACCUGCC...................... len:20 al:18
...................................................ACCUUAUAACUGUACCUGC....................... len:19 al:8
...................................................ACCUUAUAACUGUACCUGu....................... len:19 al:3
...................................................ACCUUAUAACUGUACCUGCCAAa................... len:23 al:1
...................................................gCCUUAUAACUGUACCUGC....................... len:19 al:1
...................................................ACCUUAUAACUGUACCUGCCu..................... len:21 al:3
...................................................ACCUUAUAACUGUACCUGCCAu.................... len:22 al:13
...................................................ACCUUAUAACUGUACCUGCu...................... len:20 al:6
...................................................ACCUUAUAACUGUACCUGCCA..................... len:21 al:36
...................................................AuCUUAUAACUGUACCUGCCA..................... len:21 al:1
...................................................ACCUUAUAACUGUACCUGCCAAG................... len:23 al:23
....................................................CCUUAUAACUGUACCUGCu...................... len:19 al:3
....................................................CCUUAUAACUGUACCUGCCgAGA.................. len:23 al:1
....................................................CCUUAUAACUGUACCUGCCAAGA.................. len:23 al:6
....................................................CCUUAUAACUGUACCUGC....................... len:18 al:1
....................................................CCUUAUAACUGUACCUGCCAAGc.................. len:23 al:1
....................................................CCUUAUAACUGUACCUGCCA..................... len:20 al:8
....................................................CCUUAUAACUGUACCUGCCAu.................... len:21 al:5
....................................................CCUUAUgACUGUACCUGCC...................... len:19 al:1
....................................................CCUUAUAACUGUACCUGCCAgG................... len:22 al:1
....................................................CCUUAUAACUGUACCUGCCAAG................... len:22 al:13
....................................................CCUUAUAACUGUACCUGCCAAGu.................. len:23 al:1
....................................................CCUUAUAACUGUACCUGCC...................... len:19 al:5
.....................................................CUUAUAACUGUACCUGCCAu.................... len:20 al:1
......................................................UUAUAACUGUACCUGCCA..................... len:18 al:8
......................................................UUAUAACUGUACCUGCCAu.................... len:19 al:33
......................................................UUAUAACUGUACCUGCCAA.................... len:19 al:4
......................................................UUAUAACUGUACCUGCCAg.................... len:19 al:1
......................................................UUAUAACUGUACCUGCCAAG................... len:20 al:13
......................................................UUAUAACUGUACCUGCCu..................... len:18 al:3
......................................................UUAUAACUGUACCUGCC...................... len:17 al:2
......................................................UUAUAACUGUACCUGCCAAu................... len:20 al:1
......................................................UUAUAACUGUACCUGCCAc.................... len:19 al:1
........................................................AUAACUGUACCUGCCAAGu.................. len:19 al:1