Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam Location: Porites_evermani_scaffold_1:1404250-1404342 minus PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_29.ps.pdf Locus Name: Cluster_29 GAUGACAUCAGUUAAUAAACUACCAGUAUACAGAACAUAAAAGAUUCUUUUAUGCUCUGUAUACUGGUAGUUUAUUUGCUAUGUAUACAGUUG ....((((.(((.(((((((((((((((((((((.((((((((...)))))))).))))))))))))))))))))).)))))))......... (-44.00) ...................CUACCAGUAUACAGAACAU....................................................... len:19 al:11 ...................CcACCAGUAUACAGAACAU....................................................... len:19 al:2 ...................CUACCAGUAUACAGAACAUAAA.................................................... len:22 al:4 ....................UACCAGUAUgCAGAACAU....................................................... len:18 al:1 ....................UACCAGUAUACAGAACAUAc..................................................... len:20 al:4 ....................UACuAGUAUACAGAACAU....................................................... len:18 al:2 ....................UACCAGUAUACAGAACAUAu..................................................... len:20 al:3 ....................UACCAGUAUACAGAACAUAA..................................................... len:20 al:10 ....................UACCAGUAUACAGAACAa....................................................... len:18 al:1 ....................UgCCAGUAUACAGAACAUAAAAGAUU............................................... len:26 al:2 ....................UACCAGUAUACAGAACAc....................................................... len:18 al:4 ....................UACCAGUgUACAGAACAUAAAA................................................... len:22 al:1 ....................UgCCAGUAUACAGAACAUAAA.................................................... len:21 al:2 ....................UACCAGUAUACAGAACAU....................................................... len:18 al:43 ....................UgCCAGUAUACAGAACAU....................................................... len:18 al:7 ....................UACCAGUAUACAGAACAUAAAAaAUU............................................... len:26 al:1 ....................UACCAGUAUACAGAACAUAAAAGAUU............................................... len:26 al:3 ....................UACCAGUAUACAGAACAUAAAA................................................... len:22 al:15 ....................UACCAGUAUACAGAACAUAg..................................................... len:20 al:1 ....................UACCAGUAUACAGAACAUAAAu................................................... len:22 al:6 ....................UACCAGUAUACAGAACAUAAu.................................................... len:21 al:4 ....................UACCAGUAUgCAGAACAUAAAA................................................... len:22 al:1 ....................UACCAGUAUACAGAACAUA...................................................... len:19 al:20 ....................UACCAGUAUACAGcACAU....................................................... len:18 al:1 ....................UACCAGUAUACAGAACAUAAA.................................................... len:21 al:5 .....................ACCAGUAUACAGAgCAUAAAAGAUU............................................... len:25 al:1 .....................ACCAGUAUACAGAACAUAAA.................................................... len:20 al:1 .....................ACCAGUAUACAGAACAUAAAAGAUU............................................... len:25 al:18 .....................ACCAGUAUACAGAACAUAAAAGAUUC.............................................. len:26 al:3 .....................ACCgGUAUACAGAACAUAA..................................................... len:19 al:3 .....................ACCAGUAUgCAGAACAUAAAAGAUU............................................... len:25 al:1 .....................ACCAGUAUACAGAACAUAAAAu.................................................. len:22 al:1 .....................ACCAGUAUACAGAACAUAA..................................................... len:19 al:1 .......................CgGUAUACAGAACAUAAA.................................................... len:18 al:1 .......................CAGUAUACAGAACAUAAAAGA................................................. len:21 al:1 .......................CAGUAUACAGAACAUAAAAGAUU............................................... len:23 al:6 ........................................AAGAUUCUUUUAUGCUCUGUAUACUGGUu........................ len:29 al:2 .........................................AGAUUCUUUUAUGCUCUGUAUACU............................ len:24 al:1 .........................................AGAUUCUUUUAUGCUCUGUAUACUGGU......................... len:27 al:1 ..........................................GAUUCUUUUAUGCUCUGUAcACUGGUAGU...................... len:29 al:1 ..........................................GAUUCUUUUAUGCUCUGUAUACU............................ len:23 al:24 ..........................................GAUUCgUUUAUGCUCUGUAUACU............................ len:23 al:1 ..........................................GAUUCUUUUAUGCUCUGUAUACc............................ len:23 al:6 ..............................................CUUUUAUGCcCUGUAUACU............................ len:19 al:2 ..............................................CUUUUAUGCUCUGUAUACU............................ len:19 al:3 ...............................................UUUUAUGCUCUGUAUACUGGU......................... len:21 al:7 ...............................................UUUUAUGCUCcGUAUACUG........................... len:19 al:2 ...............................................UUUUAUGCUCUGUAUACUGGUc........................ len:22 al:2 ...............................................UUUUAUGCUCUGUAUACUGGUu........................ len:22 al:14 ...............................................UUUUAUGCUCUGUAUACU............................ len:18 al:1 ...............................................UUUUAUGCUCUGUAUACUGGUA........................ len:22 al:5 ...............................................UcUUAUGCUCUGUAUACUGGU......................... len:21 al:3 ................................................UUcAUGCUCUGUAUACUGGUAG....................... len:22 al:3 ................................................UUUgUGCUCUGUAUACUGGU......................... len:20 al:7 ................................................UUUAUGCUCUGUAUACUGGc......................... len:20 al:108 ................................................UUUAUGCUCUGUgUACUGGUAG....................... len:22 al:1 ................................................UUUAUGCUCUGUAUAC............................. len:16 al:3 ................................................UUUAUGCUCUaUAUACUGGUAG....................... len:22 al:1 ................................................UUUAUGCUCUGUAUACUGGUc........................ len:21 al:5 ................................................UUUAUaCUCUGUAUACUGGU......................... len:20 al:2 ................................................UUUAUGCUCUGUAUACUGGUAGa...................... len:23 al:4 ................................................UUUAUGCUCUGUAUACUGGUgGU...................... len:23 al:8 ................................................UUUAUuCUCUGUAUACUGGUAGU...................... len:23 al:1 ................................................UUUAUGCUCUGUAUACUGa.......................... len:19 al:2 ................................................UUUAUGCUCUGUAUgCUGGUAG....................... len:22 al:1 ................................................UUUAUGCUCcGUAUACUGGU......................... len:20 al:4 ................................................UUUAUGCUCUGUAUACUGGUA........................ len:21 al:37 ................................................UUUgUGCUCUGUAUACUGGUAGU...................... len:23 al:10 ................................................UUUAUGCUCUGUAUACUGGUAa....................... len:22 al:30 ................................................cUUAUGCUCUGUAUACUGGUAGU...................... len:23 al:1 ................................................UUUAUGCUCUGUAUA.............................. len:15 al:1 ................................................UUUAUGCUCUGUAUACUGGUAuUU..................... len:24 al:6 ................................................UUUAUGCUCUGUAUACUGG.......................... len:19 al:17 ................................................UcUAUGCUCUGUAUACUGGU......................... len:20 al:4 ................................................UUUAUGCUCUGUAUACcGGUAGU...................... len:23 al:1 ................................................UUUAUGCUCUGUAUACUGGg......................... len:20 al:7 ................................................UUUAUGCUCUGUAUACUaGU......................... len:20 al:1 ................................................cUUAUGCUCUGUAUACUGGUAG....................... len:22 al:2 ................................................UUUAUGCUCUGUAUACUGGU......................... len:20 al:865 ................................................UUUAUGCUCUGUAUACUGaUAG....................... len:22 al:1 ................................................UUUAUGCUCUGcAUACUGGUAGU...................... len:23 al:2 ................................................UUUAUGCUCUGUAUACUGGUu........................ len:21 al:56 ................................................UUUAUGCUCUGUAUACUGGcAGU...................... len:23 al:1 ................................................UUUAUGCUCUGUAUACUGaU......................... len:20 al:5 ................................................cUUAUGCUCUGUAUACUGGU......................... len:20 al:1 ................................................UcUAUGCUCUGUAUACUGGUAG....................... len:22 al:1 ................................................UUUAUGCUCUGUAUACUGu.......................... len:19 al:9 ................................................UUUAUGCUCUGUAUACUGGUAGg...................... len:23 al:6 ................................................UUUAUGCUCUGUAUACUGGa......................... len:20 al:14 ................................................UUUAUGCUCUaUAUACUGGU......................... len:20 al:3 ................................................UUUAUGCUCUGUAUACUGGUAc....................... len:22 al:18 ................................................UUUAUGCUCUGUAUACUGGUAGaU..................... len:24 al:1 ................................................UcUAUGCUCUGUAUACUG........................... len:18 al:1 ................................................UUUAUGCUCcGUAUACUGGUAG....................... len:22 al:1 ................................................UUUAUGCUCUGUAUACU............................ len:17 al:1 ................................................UUUAUGCUCUGUAUAuUGGUAG....................... len:22 al:1 ................................................UUUgUGCUCUGUAUACUGGUAG....................... len:22 al:3 ................................................UUUAUGCUCUGUAUACUGGUg........................ len:21 al:1 ................................................UUUAUGCUCcGUAUACUGGUAGU...................... len:23 al:1 ................................................UUUAUGCUCUGUgUACUGGU......................... len:20 al:3 ................................................UUUAUGCUCUGUAcACUGGU......................... len:20 al:2 ................................................UUUAUGCUuUGUAUACUGGUAGU...................... len:23 al:1 ................................................UUUAUGCUCUGUAUAuUGGU......................... len:20 al:1 ................................................UUUAcGCUCUGUAUACUGGUAG....................... len:22 al:3 ................................................UUUAUGCUCUGUAUACUGGUAu....................... len:22 al:117 ................................................UUUAUGCUCUGUAUACUGGgA........................ len:21 al:2 ................................................UUUAUGCUCUGUAUACUGGUuG....................... len:22 al:1 ................................................UUUAUGCUCUGUAUACcGGU......................... len:20 al:1 ................................................UUUAUGCUCUGUAUACUGGUAGc...................... len:23 al:42 ................................................UUUAUGCUCUGUAUACUuGU......................... len:20 al:1 ................................................UUUAcGCUCUGUAUACUGGU......................... len:20 al:3 ................................................UUUAUGCUCUGUAUACUG........................... len:18 al:7 ................................................UUUAUGCUCUGUAUACUGGUAGU...................... len:23 al:410 ................................................UUUAUGCUgUGUAUACUGGUAG....................... len:22 al:1 ................................................UUUAUGCUCUGUAUgCUGGU......................... len:20 al:6 ................................................UUUAUGCUCUGcAUACUGGU......................... len:20 al:1 ................................................UUUAUGCUCUGUAUACUGc.......................... len:19 al:2 ................................................UUUAUGCUCUGUAUACUaG.......................... len:19 al:2 ................................................UUUAUGCUCUGUAUACUGGUAaU...................... len:23 al:1 ................................................UUUAUGCUCUGUAUACUGGUAGUU..................... len:24 al:2 ................................................UUUAUGCUCUGUAUACUGGUAaUU..................... len:24 al:1 ................................................UUUAUGCcCUGUAUACUGGU......................... len:20 al:1 ................................................UUUAUGCUCUGUAUACUGGUAGUaU.................... len:25 al:13 ................................................UUUAUGCUCUGUAUACUGGUAuU...................... len:23 al:8 ................................................UUUAUGCUCUGUAUACUGGUAG....................... len:22 al:346 ................................................UUUAUGCUCUGUAUACUGGUuGU...................... len:23 al:3 ................................................UUUAUGCUCUGUAUACUGGUgG....................... len:22 al:23 ................................................UUUAUGCUCUGUgUACUGGUAGU...................... len:23 al:1 .................................................UUAUGCUCaGUAUACUGGU......................... len:19 al:2 .................................................UUAUGCUCcGUAUACUGGU......................... len:19 al:10 .................................................UUAUGCcCUGUAUACUGGU......................... len:19 al:3 .................................................UUAUGCUCUGUAUACUGGUAG....................... len:21 al:151 .................................................aUAUGCUCUGUAUACUGGU......................... len:19 al:2 .................................................UcAUGCUCUGUAUACUGGUAGU...................... len:22 al:4 .................................................UUAUGCUCUGUAUACUGGUA........................ len:20 al:73 .................................................UUAUGCUCUGUAUgCUGGUAGU...................... len:22 al:5 .................................................UUAUGCUCUGUAUACUGGUgGUUU.................... len:24 al:4 .................................................UUAcGCUCUGUAUACUGGUAGU...................... len:22 al:8 .................................................UUAUGCUCUGUAcACUGGUAGUU..................... len:23 al:1 .................................................UUAUGCUCUGUAUAaUGGUAG....................... len:21 al:2 .................................................UUAUGCUCUGUAUAuUGGUAGU...................... len:22 al:2 .................................................UUAUGCUuUGUAUACUGGUAGU...................... len:22 al:5 .................................................UUAcGCUCUGUAUACUGGU......................... len:19 al:6 .................................................UUAUGCUCUGUAUACUGGcAG....................... len:21 al:1 .................................................UUAUGCUCUGUAUACUGGUAaU...................... len:22 al:1 .................................................UUAUGCUCUGUAUACUGcU......................... len:19 al:4 .................................................UUgUGCUCUGUAUACUGGU......................... len:19 al:2 .................................................UUAUGCUCUGUAUAuUGGU......................... len:19 al:1 .................................................UUAUGCUCUGUAUACUGGUuGU...................... len:22 al:19 .................................................UUAUGCUCUGUAUACUGG.......................... len:18 al:19 .................................................UUAUGCUCUGUAUACUGaUA........................ len:20 al:3 .................................................UUAUGCaCUGUAUACUGGUAGU...................... len:22 al:3 .................................................UUAUGCUCUGUAUACUG........................... len:17 al:2 .................................................UUAUGCUCUGUgUACUGGU......................... len:19 al:6 .................................................UUAUGCUCUGUAUACaGGUAGU...................... len:22 al:2 .................................................UUAUGCUCUGUAUgCUGGUA........................ len:20 al:1 .................................................UUAUGCUCUGUAUACUGGUAGUUUu................... len:25 al:1 .................................................UUAUGCUCUGUAUACUGGUAGUUUuU.................. len:26 al:1 .................................................UUAUGCUCUGUAUACUGGUAGc...................... len:22 al:315 .................................................UUAUGCUCUGUAUACUGGc......................... len:19 al:233 .................................................UUAUGCUCUGUAUgCUGGU......................... len:19 al:7 .................................................UUAUGCUCUGUAUACUuGU......................... len:19 al:4 .................................................UUAUGCUCUGUAcACUGGU......................... len:19 al:4 .................................................UUAUGCUCUGUAUACUGaUAGU...................... len:22 al:1 .................................................UUAUGCcCUGUAUACUGGUAGU...................... len:22 al:4 .................................................UUAaGCUCUGUAUACUGGU......................... len:19 al:1 .................................................UUAUGCUaUGUAUACUGGU......................... len:19 al:1 .................................................UUAUGCUCUGUAUACUGGU......................... len:19 al:1689 .................................................UUAUGCUCUGUAUACaGGU......................... len:19 al:1 .................................................UcAUGCUCUGUAUACUGGU......................... len:19 al:1 .................................................UUAUGCUCUGUAUACUGGUgG....................... len:21 al:6 .................................................UUAUGCUCUGUAUACUGGUAGa...................... len:22 al:24 .................................................UUAUGCUCUaUAUACUGGU......................... len:19 al:1 .................................................UUAUGCUCUGUAUACUGaU......................... len:19 al:7 .................................................UUAUGCUCcGUAUACUGGUAGU...................... len:22 al:14 .................................................UUAUGCUCUGUAUACUGGg......................... len:19 al:17 .................................................UUAUGCUCUGUgUACUGGUAGU...................... len:22 al:7 .................................................UUAUGCUCUGUAUACcGGUAGU...................... len:22 al:8 .................................................UUAUGCUCUGUAUACUGGUc........................ len:20 al:1 .................................................UUAUGCUCUGUAUACaGGUAGUU..................... len:23 al:3 .................................................UUAUGCUCUGUAUACUaGUAGU...................... len:22 al:1 .................................................cUAUGCUCUGUAUACUGGUAGU...................... len:22 al:6 .................................................aUAUGCUCUGUAUACUGGUAGU...................... len:22 al:4 .................................................UUAUGCUCUGUAUACUGGUAGg...................... len:22 al:18 .................................................UUAUGCUCUGUAUACUGGUu........................ len:20 al:10 .................................................UUAUaCUCUGUAUACUGGUAGU...................... len:22 al:1 .................................................UUAUGCUCgGUAUACUGGUA........................ len:20 al:1 .................................................UUAUGCUCUGUAUACUGGUAGUc..................... len:23 al:5 .................................................UUAUGCUCUGUAUACUGGUAGUU..................... len:23 al:89 .................................................UUAUGCUCUGUAUACUGGUAu....................... len:21 al:32 .................................................cUAUGCUCUGUAUACUGGUAG....................... len:21 al:1 .................................................UUAUGCUuUGUAUACUGGU......................... len:19 al:2 .................................................UUAUGCUCUGUAUACUaGU......................... len:19 al:2 .................................................UUAUGaUCUGUAUACUGGUAGU...................... len:22 al:1 .................................................UaAUGCUCUGUAUACUGGUAGU...................... len:22 al:2 .................................................UUAUGCUCUGUAUACUGGUAuU...................... len:22 al:8 .................................................UUAUGCUCUGcAUACUGGUAGU...................... len:22 al:10 .................................................UUAUGCUCUGUAcACUGGUAGU...................... len:22 al:5 .................................................UUAUGCUCUGUAUACUGa.......................... len:18 al:2 .................................................UUAUGCUCUGUAUACUGGUgGU...................... len:22 al:56 .................................................UUuUGCUCUGUAUACUGGUAGU...................... len:22 al:1 .................................................UUAUGCUCUGUAUACUGGUAuUUU.................... len:24 al:3 .................................................UUgUGCUCUGUAUACUGGUAGU...................... len:22 al:13 .................................................UUAUGCUCUGUAUACUGGcAGU...................... len:22 al:4 .................................................UUAUGCUCUGUAUACUGGUAGUa..................... len:23 al:1 .................................................UUAUGCUCUGgAUACUGGU......................... len:19 al:3 .................................................UUAUGCUCUGUAUACcGGU......................... len:19 al:4 .................................................UUAUGCUCUGUAUACUGu.......................... len:18 al:10 .................................................UUAUGCUCUGUAUACUGGUAa....................... len:21 al:7 .................................................UUAUGCUCaGUAUACUGGUAGU...................... len:22 al:1 .................................................UUAUGCUCUGUAUACUGGUAGUaUAU.................. len:26 al:5 .................................................UUAUGCUCUGcAUACUGGU......................... len:19 al:2 .................................................UUAUGCUCUGUAUACUGGUAGU...................... len:22 al:2849 .................................................UUAUaCUCUGUAUACUGGU......................... len:19 al:2 .................................................UUAUGCUCUGUAUACUGGUg........................ len:20 al:1 .................................................UUAUGCUCUGUAUACUGGUAGUaU.................... len:24 al:13 .................................................cUAUGCUCUGUAUACUGGU......................... len:19 al:5 .................................................UUAUGCUCUGUAUACUGGa......................... len:19 al:28 .................................................UUAUGCUCUaUAUACUGGUAGU...................... len:22 al:1 .................................................UUAUGCUCUGUAUACUGGUAc....................... len:21 al:2 .................................................UUAUGCUCUGUAUACcGGUAGUU..................... len:23 al:1 ..................................................UAUGCUCUGUAcACUGGUAGUU..................... len:22 al:1 ..................................................UAUGCUCUGUAUACUGGUAu....................... len:20 al:9 ..................................................UAUGCUCUGUAUACUGGUAc....................... len:20 al:1 ..................................................UAUGCgCUGUAUACUGGU......................... len:18 al:1 ..................................................UAUGCUCUGUAUACUGGUAGc...................... len:21 al:18 ..................................................UAUGCUCUGUAUACUGGUAuU...................... len:21 al:1 ..................................................UAUGCUCUGUAUACUGGgA........................ len:19 al:3 ..................................................UAUGCUCUGUAUACUGaU......................... len:18 al:5 ..................................................UAUGCUCUGUAUACUGGUAGUaU.................... len:23 al:3 ..................................................UAUGCUCUGUAUACUGGUAGU...................... len:21 al:96 ..................................................UAUGCUCUGUAUACU............................ len:15 al:1 ..................................................UAUGCUCUGUAUACUGGUgGUU..................... len:22 al:6 ..................................................aAUGCUCUGUAUACUGGU......................... len:18 al:1 ..................................................UAUGCUCUGUAUACUGGUAGUUUu................... len:24 al:12 ..................................................UAUaCUCUGUAUACUGGU......................... len:18 al:1 ..................................................UAUGCUCUGUAUACUGGUgGU...................... len:21 al:11 ..................................................UAUGCUCUuUAUACUGGUAGUU..................... len:22 al:2 ..................................................UAUGCUCaGUAUACUGGUA........................ len:19 al:1 ..................................................UAUGCUCUGUAUACUGGUAGUg..................... len:22 al:1 ..................................................UAUGCUCUGcAUACUGGUAGUU..................... len:22 al:2 ..................................................UAUGCUCUGUAUACUGGUAGUUg.................... len:23 al:2 ..................................................UAUGCcCUGUAUACUGGUAGUU..................... len:22 al:6 ..................................................UAUGCUCUGgAUACUGGUA........................ len:19 al:1 ..................................................UAUGCUCUGUAUACUGGUAGUUUAU.................. len:25 al:21 ..................................................UAUGCUCUGUAUACUGGUA........................ len:19 al:99 ..................................................UAUGCUCUGUAUACUGGUu........................ len:19 al:2 ..................................................UAUGCUCUGUAUACUGGUAGgU..................... len:22 al:5 ..................................................UAUGCUCUGUAUACUGGUc........................ len:19 al:1 ..................................................UAUGCUCUGUAUACUGGcA........................ len:19 al:1 ..................................................UAUGCUCUGUAUACUGGc......................... len:18 al:27 ..................................................UAUGCUCcGUAUACUGGUAGUU..................... len:22 al:4 ..................................................UAUGCUCUGUAUACUGGUAGUUc.................... len:23 al:4 ..................................................UAUGCUCUGUAUACUGGUAGUUUuU.................. len:25 al:1 ..................................................UAUGCUCUGUAUACUGGg......................... len:18 al:2 ..................................................UAUGCUCUGUAUACUGGU......................... len:18 al:206 ..................................................cAUGCUCUGUAUACUGGUAGUU..................... len:22 al:1 ..................................................UgUGCUCUGUAUACUGGU......................... len:18 al:5 ..................................................UAUGCUCUGUAUACUGGUAGUc..................... len:22 al:26 ..................................................UAUGCUCUGUAUACUGGa......................... len:18 al:2 ..................................................UAUGCUCUGUAUACUGGUuGU...................... len:21 al:1 ..................................................UAcGCUCUGUAUACUGGU......................... len:18 al:1 ..................................................cAUGCUCUGUAUACUGGU......................... len:18 al:2 ..................................................aAUGCUCUGUAUACUGGUAGUUU.................... len:23 al:2 ..................................................UAUGCUCUGUgUACUGGUAG....................... len:20 al:1 ..................................................UAUGCUCUGUAUACUGGUAGcU..................... len:22 al:3 ..................................................UAUGCUCUGUAUACUGGUAGg...................... len:21 al:2 ..................................................UAUGCUCUGUAUACUGGUAGUUU.................... len:23 al:33 ..................................................UAUGCUCUGUAUACUGGUAGUU..................... len:22 al:346 ..................................................UAUGCUCUGUAUACUGuUAGUU..................... len:22 al:6 ..................................................UAUGCUCUGcAUACUGGU......................... len:18 al:1 ..................................................UAUuCUCUGUAUACUGGU......................... len:18 al:1 ..................................................UAcGCUCUGUAUACUGGUAGUU..................... len:22 al:2 ..................................................UAUGCUCUGUAUACgG........................... len:16 al:1 ..................................................UgUGCUCUGUAUACUGGUAGU...................... len:21 al:1 ..................................................UAUGCUCUGUAUACcGGU......................... len:18 al:1 ..................................................UAUGCUCUGUAUACUGGUAGUUUAc.................. len:25 al:1 ..................................................UAUGCUCUGUAUACUGGUAG....................... len:20 al:27 ..................................................UAUGCUuUGUAUACUGGUAGUUU.................... len:23 al:1 ..................................................UAUGCUCUGUAUACUGaUAGUU..................... len:22 al:1 ...................................................AUGCUCUGUAUACUGGUAGUg..................... len:21 al:1 ...................................................AUGCUCUGUAUACUGGUAGUc..................... len:21 al:1 ...................................................AUGCUCUGUAUACUGGUAGc...................... len:20 al:6 ...................................................AUGCUCUGUAUACUGGaA........................ len:18 al:1 ...................................................AUGCUCUGUAUACUGGU......................... len:17 al:2 ...................................................AUGCUCUGUAUACUGGUAGUU..................... len:21 al:11 ...................................................AUGCUCUGUAUACUGGUAGU...................... len:20 al:26 ...................................................AcGCUCUGUAUACUGGUAGU...................... len:20 al:1 ...................................................AUGCUCUGUAUACUGGUA........................ len:18 al:14 ...................................................AUGCUCUGUAUACUGGUAG....................... len:19 al:3 ....................................................UGCUCUGUAUACUGGUAGgU..................... len:20 al:1 ....................................................UGCUCcGUAUACUGGUAGUU..................... len:20 al:1 ....................................................UGCUCUGUAUACUGGUAGUU..................... len:20 al:2 ....................................................UGCUCUGUAUACUGGUAGU...................... len:19 al:8 ....................................................UGCUCUGUAUACUGGUAG....................... len:18 al:3 ....................................................UGCUCUGUAUACUGGUAGUUUu................... len:22 al:3 ....................................................UGCUCUGUAUACUGGUA........................ len:17 al:1 ....................................................UGCUCUGUAUACUGGU......................... len:16 al:3 ....................................................UGCUCUGUAUACUGGUAu....................... len:18 al:1 ....................................................UGCUCUGUAUACUGGUAGUUUAUU................. len:24 al:1