Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_5010:12339-12433 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_16498.ps.pdf
Locus Name: Cluster_16498
AAUAUAAUGACUUGGUAAACAAGGAAAGCCUAUAAUAUAAGUCAUUUAAUGACUUAUAUUAUAGACUUUCCUUGUUUACCAUCUGUUUCAUACAA
......((((..((((((((((((((((.((((((((((((((((...)))))))))))))))).))))))))))))))))......)))).... (-44.10)
....................AAGGAAAGCCcAUAAUAUAAGUC.................................................... len:23 al:2
....................AAGGAAAGCCUAUAAUAUAAGU..................................................... len:22 al:3
....................AAGGAAAGCCcAUAAUAUAAGU..................................................... len:22 al:3
.....................AGGAAAGCCUAUAAUAUAAGU..................................................... len:21 al:5
.....................AGGAAAGCCUAUAAUAUAAGc..................................................... len:21 al:1
.....................AGGAAAGCCcAUAAUAUAAGUCA................................................... len:23 al:2
...................................................ACUUAUAUUAUAGACUUUCCUUG..................... len:23 al:40
...................................................ACUUAUAcUAUAGACUUUCCUUGU.................... len:24 al:1
...................................................ACUUAUAUUAUAGACUUUCCUaG..................... len:23 al:1
...................................................ACUUAUAUUgUAGACUUUCC........................ len:20 al:1
...................................................ACUUAUAUUAUAGACUUUCC........................ len:20 al:10
...................................................ACUUAUAUUAUAGACUUUCCc....................... len:21 al:2
...................................................ACUUAUAUUAUAGACUUUCCUUu..................... len:23 al:3
...................................................ACUUAUAUUgUAGACUUUCCUUG..................... len:23 al:1
...................................................ACUUAUAUUAUAGACUcUCCU....................... len:21 al:1
...................................................ACUUAUAUUAUAGACUUcC......................... len:19 al:1
...................................................ACUUAUAUUAUAGACUUUCCUUGc.................... len:24 al:6
...................................................ACUUAUAUUAUAGACUUUCCUUGa.................... len:24 al:1
...................................................ACUUAUAUUAUAGACUUUC......................... len:19 al:2
...................................................ACUUAUAcUAUAGACUUUCC........................ len:20 al:1
...................................................ACUUAUAUUAUAGACUUUCCU....................... len:21 al:15
...................................................ACUUAUAUUAUAGACUUUCCUUGU.................... len:24 al:22
...................................................ACUUAUAUUAUAGACUUUCCUU...................... len:22 al:11
...................................................ACUUAUAUcAUAGACUUUCCU....................... len:21 al:2
...................................................ACUUAUAUUAUAGACUUUCCUUc..................... len:23 al:5
...................................................ACUUAUAUUAUAGACUUUCCUc...................... len:22 al:2
...................................................ACUUAUAUUAUAGACUUUCCUcGU.................... len:24 al:1
...................................................ACUUAUAUUAUAGACUaU.......................... len:18 al:7
....................................................CUUAUAUUAUAGACUUUCCU....................... len:20 al:1
....................................................CUUAUAUUAUgGACUUUCCUUGU.................... len:23 al:2
....................................................CUUAUAUUAUAGACUUUCCUUGaU................... len:24 al:1
....................................................CUUAUAUUAUgGACUUUCCUUG..................... len:22 al:1
....................................................CUUAUAUUAUAGACUUUCC........................ len:19 al:1
....................................................uUUAUAUUAUAGACUUUCCUU...................... len:21 al:3
....................................................CUUAUAUUAUAGACUUUCCg....................... len:20 al:1
....................................................CUUAUAUUAUAGACUUUCCUUGU.................... len:23 al:17
....................................................CUUAUAUUAUAGACUUUCCUUu..................... len:22 al:5
....................................................CUUAUAUUAUAGACUUUCCUUuU.................... len:23 al:1
....................................................CUUAUAUUAUAGACUUUCCUU...................... len:21 al:13
.....................................................UUAUAUUAUAGACUUUCCgU...................... len:20 al:3
.....................................................UUAUAUUAUAGACUUUuCU....................... len:19 al:1
.....................................................UUAUAUUAUAGACUUUCCU....................... len:19 al:162
.....................................................UUAUAUaAUAGACUUUCCU....................... len:19 al:1
.....................................................UUAUAUUAUAGACUUUCCUUG..................... len:21 al:386
.....................................................UUAUAUUAUAGACUUUCaU....................... len:19 al:6
.....................................................UUAUAUcAUAGACUUUCCU....................... len:19 al:1
.....................................................UUAUAUUAUAGACUUUCCUUaU.................... len:22 al:12
.....................................................UUAUAUUAUAGACUUUCCUgG..................... len:21 al:3
.....................................................UUAUAUUAUAGACUUUCa........................ len:18 al:1
.....................................................UUAUAUUAUAGACUUUCCUaGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUcCCUUG..................... len:21 al:2
.....................................................UUAUAUUAUAGACUUUCCUUGaU................... len:23 al:16
.....................................................UUAUAUUAUAGACUUUCCa....................... len:19 al:7
.....................................................cUAUAUUAUAGACUUUCCUUG..................... len:21 al:1
.....................................................UUAUAUUAUAGACUUUCC........................ len:18 al:85
.....................................................UUAUAUUAUAGAuUUUCCUUGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUUCCcUGU.................... len:22 al:2
.....................................................UUAUAUUAUAGACUUUCCUUGc.................... len:22 al:107
.....................................................UUAUAUUAUAGACUUUCCUUa..................... len:21 al:19
.....................................................UUAUAUUAUAGACUcUCCUUGU.................... len:22 al:3
.....................................................UUAUAUUAUAGACUUUCCUUGUaU.................. len:24 al:1
.....................................................UUAUAUUgUAGACUUUCCU....................... len:19 al:1
.....................................................UUAUAUUgUAGACUUUCCUUG..................... len:21 al:3
.....................................................UUAUAUUAUAGACcUUCCUUGU.................... len:22 al:4
.....................................................UUAUAUUAUAGACUUUCCUcG..................... len:21 al:1
.....................................................UUAUAUUAUAGACUUUCCg....................... len:19 al:4
.....................................................UUAUAUUAUAGACaUUCCUUGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUUCCUUGg.................... len:22 al:5
.....................................................UUAUAUUAUAGACUUUCCUUGUUUu................. len:25 al:1
.....................................................UUAUAUUAUAGACUUUCCUU...................... len:20 al:135
.....................................................UUAUAUUAUAGACUUUCCUUGUU................... len:23 al:33
.....................................................UUAUAUUAUAGACcUUCCU....................... len:19 al:1
.....................................................UUAUAUUAUAGACUcUCC........................ len:18 al:1
.....................................................UUAUAUUAUAGACUUUCu........................ len:18 al:7
.....................................................UUAUAUUAUAGACUUUCCUUGUc................... len:23 al:5
.....................................................UaAUAUUAUAGACUUUCCUU...................... len:20 al:1
.....................................................UUAUAUUAUgGACUUUCC........................ len:18 al:1
.....................................................UUAUAUUAUAGACUUUCCUgGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUUC......................... len:17 al:1
.....................................................UUAUgUUAUAGACUUUCCUUGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUUCCgUGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUUCCUUuUU................... len:23 al:9
.....................................................UUAUAUUAUAGACUUcCCU....................... len:19 al:1
.....................................................UUAUAUUAUgGACUUUCCUUG..................... len:21 al:4
.....................................................UUAUAUcAUAGACUUUCCUUG..................... len:21 al:2
.....................................................UUAUAUUAUAGACUUUCuUUGU.................... len:22 al:3
.....................................................UUAUAUUAUAGACUaUCCUUG..................... len:21 al:1
.....................................................UUAUAUUAUgGACUUUCCU....................... len:19 al:1
.....................................................cUAUAUUAUAGACUUUCCUUGU.................... len:22 al:5
.....................................................UUAUAcUAUAGACUUUCCUUG..................... len:21 al:1
.....................................................UUAUAUUAUAGACUUUCCUUu..................... len:21 al:107
.....................................................UUAUAUUAUAGACUUUCCUcGU.................... len:22 al:7
.....................................................UUAUAUUAUAGACUUUCCUUGaUU.................. len:24 al:2
.....................................................UUAUAUUAUAGACUUUCCUUGa.................... len:22 al:16
.....................................................UUAUAUUAUAGACUUUCCUUuU.................... len:22 al:45
.....................................................UUAUAUUAUAGACUUUCCUc...................... len:20 al:17
.....................................................UUAUAUUgUAGACUUUCCUUGU.................... len:22 al:7
.....................................................UUAUAUUAUAGACUUUCCUUc..................... len:21 al:8
.....................................................UaAUAUUAUAGACUUUCCUUGU.................... len:22 al:2
.....................................................UUgUAUUAUAGACUUUCCUUG..................... len:21 al:1
.....................................................UUAUAUUAUAGACUUUCCUUGUUU.................. len:24 al:9
.....................................................UUAUAUUAUAGACgUUCCUUGU.................... len:22 al:1
.....................................................UUAUAUUAcAGACUUUCCUUGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACcUUCC........................ len:18 al:1
.....................................................UcAUAUUAUAGACUUUCCUUGU.................... len:22 al:1
.....................................................UUAUAUUAUAGACUUUCCc....................... len:19 al:17
.....................................................UUAUAUUAUAGACUUUCCUUGU.................... len:22 al:733
.....................................................UUAUAUUAUAGACUUcCCUUGU.................... len:22 al:1
......................................................UAUAUUAUAGACUUUCCUUG..................... len:20 al:3
......................................................UAUAUUAUAGACUUUCCUUGU.................... len:21 al:1
......................................................UAUAUUAUAGACUUUCCUU...................... len:19 al:2
.......................................................AUAUUAUAGACUUUCCUUuU.................... len:20 al:2
.......................................................AUAUUAUAGACUUUCCUUG..................... len:19 al:5
.......................................................AUAUUAUAGACUUUCCUUGc.................... len:20 al:2
.......................................................AUAUUAUAGACUUUCCUUGU.................... len:20 al:8
.......................................................AUAUUAUAGACUUUCCUU...................... len:18 al:2
........................................................UAUUAUAGACUUUCCUUGc.................... len:19 al:9
........................................................UAUUAUAGACUUUCCUUGU.................... len:19 al:72
........................................................UAUUAUAGACUUUCCUUGUUc.................. len:21 al:1
........................................................UAUUAUAGACUUUCCUUGUU................... len:20 al:1
........................................................UAUUAcAGACUUUCCUUGU.................... len:19 al:2
........................................................UAUUAUAGACUUUCCUUGUUU.................. len:21 al:4
........................................................UAUUAUAGACUgUCCUUGUUU.................. len:21 al:1
........................................................UAUUAUAGACUUUCCUUGg.................... len:19 al:2
........................................................UAUUAUAGACUUUCCUUG..................... len:18 al:6
........................................................UAcUAUAGACUUUCCUUGU.................... len:19 al:1
........................................................UAUUAUAGACUUUCCUUGa.................... len:19 al:1