Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1732:76482-76574 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_11997.ps.pdf
Locus Name: Cluster_11997
CCAAAUUAUGCACAGGACCGAUUUAUGCAGAAAGUAAUAGUUCAUUUACUGAGCUAUUGCUGUCUGCACAAUUUGGUCCUAUGCAUUCUGACC
.......(((((.((((((((.((.((((((.((((((((((((.....)))))))))))).)))))).)).)))))))).)))))....... (-44.00)
..AAAUUAUGCACAGGACCGAU....................................................................... len:20 al:2
...AAUUAUGCACAGGACCaAU....................................................................... len:19 al:3
...AAUUAUGCACAGGACCGAU....................................................................... len:19 al:1
....AUUAUGCACAGGACCaAU....................................................................... len:18 al:10
....................AUUUgUGCAGAAAGUAAUAGUUCA................................................. len:24 al:2
.....................UUUAUGCAGAAAGUAAUAGUUCu................................................. len:23 al:1
.....................UUUAUGCAGAAgGUAAUAGUUCA................................................. len:23 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCA................................................. len:23 al:36
.....................UUUAUGCAGAAAGUAAUA...................................................... len:18 al:2
.....................UUUAUGCAGAAAGcAAUAGUU................................................... len:21 al:1
.....................UUUAUGCAGAAAGUAAUAGUUu.................................................. len:22 al:1
.....................UUUAUGCAGAAAGUAAUAGUUCg................................................. len:23 al:1
.....................UUUgUGCAGAAAGUAAUAGUU................................................... len:21 al:15
.....................UUUAUGCgGAAAGUAAUAGUUCAU................................................ len:24 al:1
.....................UUUgUGCAGAAAGUAAUAGU.................................................... len:20 al:14
.....................UUUAUGCAGAAAGUAAUAGU.................................................... len:20 al:15
.....................UUUAUGCAGAAAGUAAUAGUUCc................................................. len:23 al:1
.....................UUUAUGCAGAAAGUAgUAGUUCA................................................. len:23 al:1
.....................UUUAUGCAGAgAGUAAUAGUUCA................................................. len:23 al:1
.....................UUUgUGCAGAAAGUAAUAGUUC.................................................. len:22 al:6
.....................UUUAUGCgGAAAGUAAUAGUUCA................................................. len:23 al:2
.....................UUUAUGCAGAgAGUAAUAGUUCAU................................................ len:24 al:3
.....................UUUAUGCAGAAAGUAAUAGUUC.................................................. len:22 al:25
.....................UUUAUGCAGAAAGUAAUAGc.................................................... len:20 al:3
.....................UUUAUGCAGAAAGUAAUAGUUCAU................................................ len:24 al:1
.....................UUUAUGCAGAAAGUAAUAGUU................................................... len:21 al:12
.....................UUUgUGCAGAAAGUAAUAGUUCAU................................................ len:24 al:3
.....................UUUgUGCAGAAAGUAAUAGUUCA................................................. len:23 al:9
.....................UUUAUGCAGAAAGUAAUAGUUaA................................................. len:23 al:1
......................UUAUGCAGAAAGUAAUAGcUCAUU............................................... len:24 al:1
......................UUAUGCAGAAAGUAAUAGUUCg................................................. len:22 al:2
......................UUgUGCAGAAAGUAAUAGUUC.................................................. len:21 al:29
......................UUAUGuAGAAAGUAAUAGUUC.................................................. len:21 al:1
......................UUAUGCAGAAAGUAAUgGUUCA................................................. len:22 al:1
......................UUAUGCAGAAAGUAAUAGUUaAU................................................ len:23 al:1
......................UUAUGCAGAAAGUAAUAGUcCAU................................................ len:23 al:1
......................UUAUGCAGAAAGUAAUAGUUCAaUU.............................................. len:25 al:1
......................UUAUGCAGAAAGUAAUAGUU................................................... len:20 al:31
......................UUAUGCAGAAAGUAAUAGUUC.................................................. len:21 al:168
......................UUAUGuAGAAAGUAAUAGUU................................................... len:20 al:1
......................UUAUGCAGAAAGUAAUAGUUu.................................................. len:21 al:3
......................UUAUGCAGAAAGUAAUAGUUa.................................................. len:21 al:3
......................UUAUGCgGAAAGUAAUAGUUCA................................................. len:22 al:1
......................UUAUGCAGAAAGUAAcAGUUC.................................................. len:21 al:1
......................UUAUGCAGAAAGUAAUAGUUCAc................................................ len:23 al:1
......................UUAUGCAGAAAGUAAUAGaUCA................................................. len:22 al:1
......................UUgUGCAGAAAGUAAUAG..................................................... len:18 al:4
......................UUAUGCAGAgAGUAAUAGUUC.................................................. len:21 al:20
......................UUgUGCAGAAAGUAAUAGUUCA................................................. len:22 al:61
......................UUAUGCAGAAAGUgAUAGU.................................................... len:19 al:1
......................UUAUGCAGAAAGcAAUAGUUC.................................................. len:21 al:1
......................UUAUGCAaAAAGUAAUAGUUCA................................................. len:22 al:1
......................UUAUGCAGAAAGUAAUAGUUCA................................................. len:22 al:171
......................UUAUGCAGAAAGUAAUAGUUCAUa............................................... len:24 al:3
......................UUAUGCAGgAAGUAAUAGUUCA................................................. len:22 al:2
......................UUAUGCAGAAAGUAAUAGU.................................................... len:19 al:84
......................UUgUGCAGAAAGUAAUAGU.................................................... len:19 al:25
......................UUAUGCAGAAAGUAAUAGUUCAU................................................ len:23 al:20
......................UUAcGCAGAAAGUAAUAGUUC.................................................. len:21 al:3
......................UUAUGCAGAAgGUAAUAGU.................................................... len:19 al:1
......................UUAUGCAGAAAGUAAc....................................................... len:16 al:2
......................UUAUGCAGAAAGUAAUAGc.................................................... len:19 al:5
......................UUAUGCAGAAAGUAgUAGUUC.................................................. len:21 al:3
......................UUAUGCcGAAAGUAAUAGUUC.................................................. len:21 al:1
......................UUAUaCAGAAAGUAAUAGUUCA................................................. len:22 al:2
......................UUAaGCAGAAAGUAAUAGUUCAU................................................ len:23 al:2
......................UUAUGCAGAAAGUAAUAGUc................................................... len:20 al:2
......................cUAUGCAGAAAGUAAUAGU.................................................... len:19 al:1
......................UUgUGCAGAAAGUAAUAGUUCAU................................................ len:23 al:2
......................UUAUGCAGAAAGUAAUAGUUCAa................................................ len:23 al:3
......................UUAUGCAGAAAGUAAUuGU.................................................... len:19 al:1
......................UUAUGCAaAAAGUAAUAGUUC.................................................. len:21 al:1
......................UUAUGCAGAgAGUAAUAGUUCA................................................. len:22 al:26
......................UUAUGCAGAAAGUAAUAGUUCAUU............................................... len:24 al:20
......................UUgUGCAGAAAGUAAUAGUU................................................... len:20 al:14
......................UUAUGCAGAAAGUAAU....................................................... len:16 al:2
......................aUAUGCAGAAAGUAAUAGUUCA................................................. len:22 al:1
.......................UAUGCAGAAAGUAAUAGUUCAUU............................................... len:23 al:2
.......................UAUGCAGAAAGUAAUAGc.................................................... len:18 al:2
.......................UAUGCAGAAAGUAAUAGUUC.................................................. len:20 al:1
.......................UAUGCAGAAAGUAAUAGUU................................................... len:19 al:1
.......................UAUGCAGAgAGUAAUAGUUCAUU............................................... len:23 al:1
.......................UAUGCgGAAAGUAAUAGU.................................................... len:18 al:5
.......................UAUGCAGAAAGUAAUAGU.................................................... len:18 al:20
........................AUGCAGAAAGUAAUAGUUC.................................................. len:19 al:2
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAAUc.................... len:31 al:2
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:31 al:26
..........................................CAUUUACUGAGCUAUUGCUGUCUGCACgAUU.................... len:31 al:1
..........................................CAUUUACUGAGCUAUUGCUGUCUGCgCAAUU.................... len:31 al:2
..........................................CAUUUACcGAGCUAUUGCUGUCUGCACAAUU.................... len:31 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCAuAAUU.................... len:30 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUc.................... len:30 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:30 al:20
...........................................AUUUACUGAGCUAUUGCUGUCUGCAC........................ len:26 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCACA....................... len:27 al:1
...........................................AUUUACUGAGCUAUUGCUGUCUGCACAAUUU................... len:31 al:10
............................................UUUACUGAGCUAUUGCcGUCUGCACAAU..................... len:28 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUc.................... len:29 al:1
............................................UUUACUGAGCUAUUGCcGUCUGCACAAUU.................... len:29 al:1
............................................UUUACUGAGCUAUUGCUGUCUGCACAAUU.................... len:29 al:22
..............................................UACUGAGCUAUUGCUGUCUGCACAuU..................... len:26 al:9
.................................................UGAGCUAUUGCUGUCUGCACAAU..................... len:23 al:1
.................................................UGAGCUAcUGCUGUCUGCACAAU..................... len:23 al:1
...................................................AGCUAUUGCUGcCUGCACAAUUU................... len:23 al:1
...................................................AGCUAUaGCUGUCUGCACAAUU.................... len:22 al:1
...................................................AGCUAUUGCUGUCUGCACAAU..................... len:21 al:16
...................................................AGCUAUUGCUGUCUGCAu........................ len:18 al:2
...................................................AGCUAUUGCUGUCUGCACAAUUU................... len:23 al:6
...................................................AGCUAUUGCUGcCUGCACAAU..................... len:21 al:1
...................................................AGCUAUUGCUGUCUGCACAgUU.................... len:22 al:2
...................................................AGCUAUUGCUGUCUGCACAAUU.................... len:22 al:26
...................................................AaCUAUUGCUGUCUGCACAAUU.................... len:22 al:1
...................................................AGCUAUUGCUGUCUGCACA....................... len:19 al:2
...................................................AGCUAaUGCUGUCUGCACAAUU.................... len:22 al:1
...................................................AGCUAUUGCUGUCUGCAC........................ len:18 al:1
...................................................AGCUAUUGCUGUCUGCACAAUc.................... len:22 al:1
.....................................................CUAUUGCUGUCUGCACAAc..................... len:19 al:1
.........................................................................UGGUCCUAUGCAUUCUGAC. len:19 al:1