Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1503:47558-47651 plus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_11134.ps.pdf
Locus Name: Cluster_11134
AGGAUGUUGGUGUAGUGAGACACUACACCAGUGUAGUCUUGGCAUGCUUCUUGUCAAGUCUAGGCUGGUUAGUUUUCUCUCUUCACACUUUAUG
........(((((((.((((.((((.((((((.(((.(((((((.......))))))).))).))))))))))..)))).))..)))))..... (-36.20)
AGGAUGUUGGUGUAGUGAGACA........................................................................ len:22 al:3
.GGAUGUUGGUGUAGUGAGACA........................................................................ len:21 al:1
.aGAUGUUGGUGUAGUGAGACA........................................................................ len:21 al:1
..GAUGUUGGUGUAGUGgGACA........................................................................ len:20 al:1
..GAUGUUGGUGUAGUGuGACA........................................................................ len:20 al:2
..GAUGUUGGUGUAGUGAGACA........................................................................ len:20 al:22
..GAUGUUGGUGUAGUGAGACc........................................................................ len:20 al:1
...AUGUUGGUGUAGUGAGACA........................................................................ len:19 al:140
...AUGUUGGcGUAGUGAGACA........................................................................ len:19 al:2
...AUGUUGGgGUAGUGAGACA........................................................................ len:19 al:1
...AUGUcGGUGUAGUGAGACA........................................................................ len:19 al:1
...AUGUUGGUGUAGUGAGACu........................................................................ len:19 al:1
...AUGUUGGUGUAGUGAGAuA........................................................................ len:19 al:1
....UGUUGGUGUAGUGAGAuA........................................................................ len:18 al:1
....UGUUGGUGUAGUGAGACA........................................................................ len:18 al:30
......UUGGUGUAGUGAGACA........................................................................ len:16 al:1
......................CUACACCAGUGUAGUCUUGGCA.................................................. len:22 al:42
......................CUACACCAGUGUAGUCUUGGCuU................................................. len:23 al:1
......................CUACACCAGUGUAGUCUUGGu................................................... len:21 al:10
......................CcACACCAGUGUAGUCUUGGCA.................................................. len:22 al:1
......................CUACACCAGUGUAGUCUUGGa................................................... len:21 al:1
......................CUACACCAGUGUAGUCUUGGCgUGCUU............................................. len:27 al:1
......................CUACACCAGUGUAGcCUUGGCA.................................................. len:22 al:1
......................CUACACCAGUGUAGUCUUGGCAU................................................. len:23 al:1
......................CUACACCAGUGUAGUCUUGGC................................................... len:21 al:10
......................CUACACCAGUGUAGUCUUGGCAUGCUU............................................. len:27 al:7
......................CUACgCCAGUGUAGUCUUGGCA.................................................. len:22 al:1
.......................UACACCgGUGUAGUCUUGGCA.................................................. len:21 al:1
.......................UACACCAGUGUAGUCUUGGCA.................................................. len:21 al:9
.......................UACACCAGUGUAGUCUUGGC................................................... len:20 al:2
.......................UACACCAGUGaAGUCUUGGC................................................... len:20 al:1
.......................UACACCAGUGUAGUCUUGc.................................................... len:19 al:2
.......................UACACCAGUGUAGUCUUaG.................................................... len:19 al:1
.......................UACAuCAGUGUAGUCUUGGCA.................................................. len:21 al:1
.......................UACACCAGUGUAGUCUUG..................................................... len:18 al:14
.......................UACACCAGUGUAGUCUUGGCAUu................................................ len:23 al:3
.......................UACACCAGUGUAGUCUUGu.................................................... len:19 al:7
............................................UGCUUCUUGUCAgGUCUAGGCUGGUUAGUU.................... len:30 al:1
............................................UGCUUCUUGUCAgGUCUAGGCUGGUUAGUUU................... len:31 al:5
.................................................CUUGUCAAGUCUAGGCUGGUUAGUUU................... len:26 al:2
..................................................UUGUCAAGUCUAGGCUGGUUAGUUU................... len:25 al:2
...................................................UGUCAAGUCUAGGCUGGUUAGU..................... len:22 al:7
...................................................UGUCAAGUCUAGGCUGGUUuGU..................... len:22 al:1
....................................................cUCAAGUCUAGGCUGGUUAGUUU................... len:23 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUUUc.................. len:23 al:43
.....................................................UCAAGUCUAGGCUGGUUAGUUgU.................. len:23 al:2
.....................................................UCAAGUCgAGGCUGGUUAGUUU................... len:22 al:4
.....................................................UCAAGUCUAGGCUGGUUAGgUU................... len:22 al:9
.....................................................cCAAGUCUAGGCUGGUUAGU..................... len:20 al:11
.....................................................UCAAGUCUAGGCUGGUcAGU..................... len:20 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUUUaCU................ len:25 al:4
.....................................................UCAAGcCUAGGCUGGUUAGUUU................... len:22 al:163
.....................................................UCAAGUCUAGGCUGGUUAcU..................... len:20 al:1
.....................................................UCAAGUCUAGGCUGGUaAGUUU................... len:22 al:4
.....................................................UCAAGUCUAaGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAAGUCUAGGCUGGcU........................ len:17 al:3
.....................................................UCAAGUCUAGGCUGGcUAGUUU................... len:22 al:150
.....................................................UCAAGUCUAGGCUGGUUAGcUUU.................. len:23 al:3
.....................................................UCAAGUCUAGGCUGGUUAGUg.................... len:21 al:10
.....................................................UCAAGUCUAGGCUGGU......................... len:16 al:3
.....................................................UCAAGUCUAGGCUGGUUgGUUUU.................. len:23 al:1
.....................................................UCuAGUCUAGGCUGGUUAGUUU................... len:22 al:22
.....................................................UCAAGUCUAGuCUGGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGGCUGGUUAc...................... len:19 al:4
.....................................................UCAAGUCUAGGCUGGUg........................ len:17 al:4
.....................................................UCAAGUCUgGGCUGGUUAGUUU................... len:22 al:177
.....................................................UCAAGUCUAGGCUGGUUAaUUU................... len:22 al:4
.....................................................UCAAGUCUAGGCcGGUUAGUU.................... len:21 al:5
.....................................................UCAcGUCUAGGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAuGUCUAGGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAAGUCUAGGCaGGUUAGUU.................... len:21 al:2
.....................................................UCAAGcCUAGGCUGGUUAGU..................... len:20 al:6
.....................................................UCAAGUCUAGGCUGGUUAGg..................... len:20 al:9
.....................................................UCAAGUCUAGGCUGGUUAuUUU................... len:22 al:5
.....................................................UCAAGUCUAGGCUGG.......................... len:15 al:1
.....................................................UCAAGUCUAGGCUGaUUAGU..................... len:20 al:1
.....................................................UCAAGUCUAGGCUGGUUAG...................... len:19 al:14
.....................................................UCAAGUCUAGGCUcGUUAGUUU................... len:22 al:1
.....................................................UCgAGUCUAGGCUGGUUAGUUU................... len:22 al:188
.....................................................UCAAGUCUAGGCUGGUUcGUUU................... len:22 al:7
.....................................................UCAAGUCUAGGCUGGUUAGUUUUuU................ len:25 al:10
.....................................................UCAAGUCaAGGCUGGUUAGUUU................... len:22 al:7
.....................................................UCAAGUCUAGGaUGGUUAGUUU................... len:22 al:4
.....................................................UCAAGUCcAGGCUGGUUAGU..................... len:20 al:3
.....................................................UCAAGUCUAGGCUGGUUgGU..................... len:20 al:1
.....................................................UCAAGUCUAGGCUGGUUAGgUUU.................. len:23 al:1
.....................................................UCAAGUCUAGGCUGGUcAGUUU................... len:22 al:74
.....................................................UCgAGUCUAGGCUGGUUAGU..................... len:20 al:6
.....................................................UCAAGUCUAGGuUGGUUAGUUU................... len:22 al:36
.....................................................UCAAGUCUgGGCUGGUUAGU..................... len:20 al:2
.....................................................UCAAGUCUAGGCUGGaUAGUUU................... len:22 al:19
.....................................................UCAAGUCUAuGCUGGUUAGUUU................... len:22 al:7
.....................................................UCAAGUCUAGcCUGGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGGCUuGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGaCUGGUUAGU..................... len:20 al:1
.....................................................UCAAuUCUAGGCUGGUUAGUUU................... len:22 al:4
.....................................................UCAAGUCUAGGCUaGUUAGUUU................... len:22 al:42
.....................................................UCAAGUCUAGGuUGGUUAGU..................... len:20 al:3
.....................................................UCAAGUCUAGGCUGGUUAGUUUa.................. len:23 al:75
.....................................................UCAAGUCUAGGCgGGUUAGUUU................... len:22 al:17
.....................................................UCAAGaCUAGGCUGGUUAGUUU................... len:22 al:11
.....................................................UCAAGUCUAcGCUGGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGGCUGGUUgGUUU................... len:22 al:111
.....................................................UCAAGUCUAGGCUGGUUAu...................... len:19 al:26
.....................................................UCAAGUCUAGGCUGGUgAGU..................... len:20 al:1
.....................................................UCAAGUCcAGGCUGGUUAGUUU................... len:22 al:100
.....................................................UCAAGUCUAGGCUGGUc........................ len:17 al:11
.....................................................UCAAGUCUAGGCUGGUUAGUaUU.................. len:23 al:2
.....................................................UuAAGUCUAGGCUGGUUAGUUU................... len:22 al:52
.....................................................UCAAGUCgAGGCUGGUUAGUU.................... len:21 al:2
.....................................................UCAAGUCUAuGCUGGUUAGU..................... len:20 al:1
.....................................................UCAAGUCUgGGCUGGUUAGUU.................... len:21 al:12
.....................................................UCAAGUCUAGGCUGGUUAGUgU................... len:22 al:192
.....................................................UCAAGUCcAGGCUGGUUAGUU.................... len:21 al:9
.....................................................aCAAGUCUAGGCUGGUUAGU..................... len:20 al:2
.....................................................UCAAGUCUAGGCUGaUUAGUUU................... len:22 al:22
.....................................................UCAAGUCUAGGCUGGUcAGUU.................... len:21 al:3
.....................................................UCAAGUCUAGGCUaGUUAGUUUU.................. len:23 al:1
.....................................................UCAAGUCUcGGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAAGUCUAGGCUGGUa........................ len:17 al:3
.....................................................UCAAGUCaAGGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUc.................... len:21 al:238
.....................................................UCAAGUCUAGaCUGGUUAGUU.................... len:21 al:4
.....................................................UCAAGUCUAGGCUGGUUAGUUc................... len:22 al:3190
.....................................................UCAAGUCUAGGCUGGUUAGcUU................... len:22 al:78
.....................................................UCAAGUCUAGGCUGGUUAGUcU................... len:22 al:110
.....................................................UCAAGUCUAGGCUGGUUAGcU.................... len:21 al:15
.....................................................UCAAGUCUAGGCaGGUUAGUUU................... len:22 al:25
.....................................................UCAAGUCUAGGCUGGUUAGUa.................... len:21 al:11
.....................................................UCAAGUCUAaGCUGGUUAGUUU................... len:22 al:24
.....................................................UaAAGUCUAGGCUGGUUAGUUU................... len:22 al:21
.....................................................UCAAGUCUAGGCUGGUUAGUUU................... len:22 al:43003
.....................................................UCAAGcCUAGGCUGGU......................... len:16 al:1
.....................................................UCAAGaCUAGGCUGGUUAGU..................... len:20 al:1
.....................................................UgAAGUCUAGGCUGGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUUaU.................. len:23 al:90
.....................................................UCAAGUCUAGGCUGGcUAGUU.................... len:21 al:6
.....................................................UCAAGUCUAGGCUGGcUAGU..................... len:20 al:2
.....................................................UCgAGUCUAGGCUGGUUAGUUUU.................. len:23 al:7
.....................................................UCAAGUCcAGGCUGGUUAGUUUU.................. len:23 al:3
.....................................................UuAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:2
.....................................................UCAAGUCUAGGCUGGUgAGUUU................... len:22 al:4
.....................................................aCAAGUCUAGGCUGGUUAGUUU................... len:22 al:93
.....................................................UCAAGUCUAGGCUGGUUAGUU.................... len:21 al:2390
.....................................................UCAAGUCaAGGCUGGUUAGU..................... len:20 al:1
.....................................................cCAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:6
.....................................................UCAAGUCUAGGCcGGUUAGUUU................... len:22 al:134
.....................................................UCAAGUCUAGGCUGGUUAGUUUUu................. len:24 al:156
.....................................................UCAAGUCUAGGCUGGUUgGUU.................... len:21 al:11
.....................................................UCAAGgCUAGGCUGGUUAGUUU................... len:22 al:11
.....................................................UCAAGUCUcGGCUGGUUAGUUU................... len:22 al:3
.....................................................UCAAGUCUAGGCUGGaUAGUUUU.................. len:23 al:2
.....................................................UCAAGUCUAGGCUGGUUAGUUUUC................. len:24 al:8
.....................................................UCAAGUCUAGGCUGGUUAGUUg................... len:22 al:60
.....................................................UCAAGUCUAGGCUaGUUAGU..................... len:20 al:2
.....................................................UCAAGUaUAGGCUGGUUAGUUU................... len:22 al:4
.....................................................UCAAGUCUAGGCUGGUUAuUU.................... len:21 al:1
.....................................................UCAAGUCUAGGCcGGUU........................ len:17 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUUUUaU................ len:25 al:5
.....................................................UCAAGUCUAGGCUGGUUA....................... len:18 al:28
.....................................................UCAAGUCUAGGCUGGUUuGUUU................... len:22 al:5
.....................................................UCAAGUCUAGaCUGGUUAGUUU................... len:22 al:33
.....................................................UCAAGUCUAGGCUGGgUAGUUU................... len:22 al:10
.....................................................gCAAGUCUAGGCUGGUUAGUUU................... len:22 al:9
.....................................................cCAAGUCUAGGCUGGUUAGUUU................... len:22 al:235
.....................................................UCAAaUCUAGGCUGGUUAGUU.................... len:21 al:1
.....................................................aCAAGUCUAGGCUGGUUAGUU.................... len:21 al:4
.....................................................UCAAGUCUAGGCUGGUUAGa..................... len:20 al:2
.....................................................UCAAGUCUAGGCUGGUUAGUUcU.................. len:23 al:6
.....................................................UCAuGUCUAGGCUGGUUA....................... len:18 al:1
.....................................................UCAAaUCUAGGCUGGUUAGUUU................... len:22 al:23
.....................................................UCAAGUCUAGGCUGGUUAGUUUaC................. len:24 al:13
.....................................................UCAAGUCUAGGCUGGUUAGc..................... len:20 al:111
.....................................................UCAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:821
.....................................................UCAAGUCUAGGCUGGUUAGU..................... len:20 al:968
.....................................................UCcAGUCUAGGCUGGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGGCUGGUUAcUUU................... len:22 al:2
.....................................................UCAAGUCUAGGCUGuUUAGUUU................... len:22 al:3
.....................................................UCAAGcCUAGGCUGGUUAGUUUU.................. len:23 al:5
.....................................................UCAAGUuUAGGCUGGUUAGUUU................... len:22 al:10
.....................................................UCAAGUCUAGGCUGGUUAGUUa................... len:22 al:112
.....................................................UCAAGUCUgGGCUGGUUAGUUUU.................. len:23 al:8
.....................................................UCAcGUCUAGGCUGGUUAGUUU................... len:22 al:8
.....................................................UCAAGUCUAGGCUGGUUAGaUU................... len:22 al:11
.....................................................UCAAcUCUAGGCUGGUUAGUUU................... len:22 al:1
.....................................................UCAAGUCUAGGCUGGUU........................ len:17 al:72
.....................................................UCAAGUCUAGGCUGGUUAGUaU................... len:22 al:12
.....................................................UCAAGUCUAGGCUGGUUAGgU.................... len:21 al:19
.....................................................UCgAGUCUAGGCUGGUUAGUU.................... len:21 al:13
.....................................................UCAAGUCUuGGCUGGUUAGUUU................... len:22 al:6
.....................................................aCAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:3
.....................................................UCAAGUCUAGGCcGGUUAGU..................... len:20 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUUaUC................. len:24 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUUUUa................. len:24 al:3
.....................................................cCAAGUCUAGGCUGGUUAGUU.................... len:21 al:13
.....................................................UCAAGUCcAGGCUGGUU........................ len:17 al:1
.....................................................UCAAGUCUuGGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAAGUCUAGGCUGGUUAGaU.................... len:21 al:6
.....................................................UCAAGUCUAGGgUGGUUAGUUU................... len:22 al:2
.....................................................UCAAGUCUAGGuUGGUUAGUU.................... len:21 al:3
.....................................................UaAAGUCUAGGCUGGUUAGUUUU.................. len:23 al:1
.....................................................UCAAGUCUAGGCUGGcUAGUUUU.................. len:23 al:3
.....................................................cCAAGUCUAGGCUGGUU........................ len:17 al:1
.....................................................UCAAGUCUAGGCUGGUUAGUcUU.................. len:23 al:1
.....................................................UaAAGUCUAGGCUGGUUAGUU.................... len:21 al:1
.....................................................UCAAGcCUAGGCUGGUUAGUU.................... len:21 al:14
.....................................................UCAuGUCUAGGCUGGUUAGUUU................... len:22 al:30
.....................................................UCAAGUCUAGGCUGGUUuGU..................... len:20 al:12
.....................................................UuAAGUCUAGGCUGGUUAGU..................... len:20 al:3
......................................................aAAGUCUAGGCUGGUUAGUUU................... len:21 al:1
......................................................CAAGUCUAGGCUGGUUAGcU.................... len:20 al:1
......................................................CAAGUCUAGGCUGGgUAGUUU................... len:21 al:1
......................................................CAAGUCUAGcCUGGUUAGUUU................... len:21 al:1
......................................................CAAGUCUAGGCUGGUUAGUUUc.................. len:22 al:2
......................................................uAAGUCUAGGCUGGUUAGUUU................... len:21 al:2
......................................................CAAGUCUAGGCUGGUUAGc..................... len:19 al:1
......................................................CAAGUCUAGGCUGGUUAGUUU................... len:21 al:102
......................................................CAAGUCUAGGCUGGUUAGUU.................... len:20 al:3
......................................................CAAGUCUAGGCUGGUUAGUUc................... len:21 al:7
......................................................CAAGUCUAGGCUGGUUAGUcU................... len:21 al:1
......................................................CAAGUCUAGGCUGGUUAGU..................... len:19 al:5
......................................................CAAGUCUAGGCUGGUUAGUUUU.................. len:22 al:1
......................................................CAAGUCUAGGCUGGUcAGUUU................... len:21 al:2
......................................................CAAGcCUAGGCUGGUUAGUUU................... len:21 al:1
.......................................................AAGUCUAGGCUGGUUAGUUUU.................. len:21 al:1
.......................................................AAGUCUAGGCUGGUUAGUUU................... len:20 al:103
.......................................................AAGUCUAGGCUGGUUAGU..................... len:18 al:3
.......................................................AAGUCUAGGCUGGUUAGUUc................... len:20 al:9
.......................................................AAGUCUAGGCUGGUUAGcUU................... len:20 al:1
.......................................................AAGUCUAGGCUGGUUAGUU.................... len:19 al:8
.......................................................AAGUCUAGGCUGGUUAGUcU................... len:20 al:1
........................................................AGUCUAGGCUGGUUAGUUU................... len:19 al:7
.........................................................GUCUAGGCUGGUUAGUUc................... len:18 al:1
.........................................................GUCUAGGCUGGUUAGUUU................... len:18 al:14