Genome: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/data/Porites_evermanni_v1.fa
Alignments: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/merged_alignments.bam
Location: Porites_evermani_scaffold_1429:47235-47326 minus
PDF file name: /home/shared/8TB_HDD_02/shedurkin/deep-dive-expression/E-Peve/output/05-Peve-sRNA-ShortStack_4.1.0/ShortStack_out/strucVis/Cluster_10965.ps.pdf
Locus Name: Cluster_10965
UGUUUGCGACACUUAUUGUUUGCAUCACUAAAAUUUCUCAAUGAUUCAAUUGAGAAAUUGAAGUGAUGCUAACAAUAACUGUCAAAAUAAUU
(((((..((((.((((((((.((((((((..(((((((((((......)))))))))))..)))))))).)))))))).)))).)))))... (-40.20)
.GUUUGCGACACUUAUUGUU........................................................................ len:19 al:5
..................UUUGCAUCACUAAAAUUUCUu..................................................... len:21 al:2
..................UUUGCAUCACUAAAAUUUCUCAAU.................................................. len:24 al:48
..................UUUGCAcCACUAAAAUUUCU...................................................... len:20 al:1
..................UUUGCAUCACUAAgAUUUCUCAAU.................................................. len:24 al:1
..................UUUGCAUCACUAAAAUUUCU...................................................... len:20 al:14
..................UUUGCAUCACUAAAAUUUCUCAAUG................................................. len:25 al:1
..................UUUGCAUCACUAAAAUUUC....................................................... len:19 al:2
..................UUUGCAUCACUAAAAUUUCUCAAc.................................................. len:24 al:1
..................cUUGCAUCACUAAAAUUUCUC..................................................... len:21 al:1
..................UUUGCAUCACUAAAAUUUCUCu.................................................... len:22 al:14
..................UUUGCAUCACUAAAAUUUCUCA.................................................... len:22 al:7
..................UUUGCAUCACcAAAAUUUCU...................................................... len:20 al:3
..................UUUGCAUCACUAAAAUUUCUC..................................................... len:21 al:26
..................UUUGCAUCACUAAAAUUUCUCAA................................................... len:23 al:1
..................UUUGCAUCACUAAAAUUUCUCg.................................................... len:22 al:1
..................UUUGCAUCACUAAAAUUUCc...................................................... len:20 al:6
..................UUUGCAUaACUAAAAUUUCU...................................................... len:20 al:1
..................UUUGCAUCACUAAAAUUUCUCc.................................................... len:22 al:1
..................cUUGCAUCACUAAAAUUUCUCAAU.................................................. len:24 al:1
...................UUGCAUCACUAAAAUUUCU...................................................... len:19 al:6
...................UUGCAUCACUAAAAUUUCUCAAU.................................................. len:23 al:7
...................cUGCAUCACUAAAAUUUCUCAAU.................................................. len:23 al:3
....................UGCAUCACUAAAAcUUCUCAAU.................................................. len:22 al:28
....................UGCAUCACUAAAAUUUCUCAu................................................... len:21 al:27
....................UGCuUCACUAAAAUUUCUCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUUcCUCAAU.................................................. len:22 al:27
....................UGCAUCACUAAAAUUUCUCAAg.................................................. len:22 al:11
....................UcCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCAuUAAAAUUUCUCAAU.................................................. len:22 al:4
....................aGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:18
....................UGCAUCACUAgAAUUUCUCAAU.................................................. len:22 al:14
....................UGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:6555
....................UGCAUCACUAAAAUUUCUCAAUG................................................. len:23 al:30
....................UGCAUCACUAAAAUUUCU...................................................... len:18 al:145
....................UGCAUCACUAAAAUUUCUCAuU.................................................. len:22 al:12
....................UGCAUCACUAAAAUUUCcCAAU.................................................. len:22 al:28
....................UGCAUCACUAAAAcUUCU...................................................... len:18 al:1
....................UGCAUCACUAAAAUUUCc...................................................... len:18 al:17
....................UGCAUCACUAAAAUUUCUCg.................................................... len:20 al:2
....................UGCAUCACUAAAAUUUCUCu.................................................... len:20 al:8
....................UGCAUCACUAAAAUUcCU...................................................... len:18 al:1
....................UGCAUCAaUAAAAUUUCUCAAU.................................................. len:22 al:3
....................UGCgUCACUAAAAUUUCUCAAU.................................................. len:22 al:31
....................UGCAUuACUAAAAUUUCUCAAU.................................................. len:22 al:3
....................UGaAUCACUAAAAUUUCUCAAU.................................................. len:22 al:4
....................UGCAUCACUAAAgUUUCUCAAU.................................................. len:22 al:14
....................UGCgUCACUAAAAUUUCU...................................................... len:18 al:1
....................UaCAUCACUAAAAUUUCUCA.................................................... len:20 al:1
....................UuCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:3
....................UGCAcCACUAAAAUUUCUCAA................................................... len:21 al:1
....................UGCAgCACUAAAAUUUCUC..................................................... len:19 al:1
....................UGCAUaACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUcCUCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUUUCUCAAUGu................................................ len:24 al:4
....................UGCAUCACcAAAAUUUCUCAAU.................................................. len:22 al:7
....................UGuAUCACUAAAAUUUCUCAAU.................................................. len:22 al:2
....................UGCAUCgCUAAAAUUUCUCAAU.................................................. len:22 al:41
....................UGCgUCACUAAAAUUUCUCAA................................................... len:21 al:1
....................UGCAUCACUAAAAUUUCUCAAUuA................................................ len:24 al:2
....................UGCAUCACUAAAAcUUCUCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUUUCaCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCcCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUaUCUCAAU.................................................. len:22 al:1
....................UGCAaCACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUaUCAAU.................................................. len:22 al:2
....................UGCAUCACUAAAAcUUCUC..................................................... len:19 al:1
....................UGCAUCACUAAAAUUUCUCAAUu................................................. len:23 al:164
....................UGCAUCACUAAAAUUUCUCc.................................................... len:20 al:1
....................UGCuUCACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCcUCACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UaCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:3
....................UGCAUCACUAAAAUUaCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCAAcG................................................. len:23 al:1
....................UGCAUCACUAAAAUUUCUCA.................................................... len:20 al:262
....................UGCAUCACUAAAAUUUCUuAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCUCAA................................................... len:21 al:32
....................UGCAUCACUAAAAUcUCUCAAU.................................................. len:22 al:15
....................cGCAUCACUAAAAUUUCUCAAU.................................................. len:22 al:36
....................UGCAUCACUAAAAUUUCUCAc................................................... len:21 al:3
....................UGCAcCACUAAAAUUUCUCAAU.................................................. len:22 al:25
....................UGCAUCACUAAAAUUUCUCAAa.................................................. len:22 al:20
....................UGCAUCACUAAAAUUUCUC..................................................... len:19 al:107
....................UGCAUCACUAAAAUUUuUCAAU.................................................. len:22 al:2
....................UGCAUCACUAAAAaUUCUCAAU.................................................. len:22 al:2
....................UGCAUCACUAAgAUUUCUCAAU.................................................. len:22 al:8
....................UGCAUCACUAAAAUUUCUu..................................................... len:19 al:2
....................UGCAUCACUAAgAUUUCU...................................................... len:18 al:1
....................UGCAUCACUAAAAUUUCUCAgU.................................................. len:22 al:45
....................UGCAaCACUAAAAUUUCUCAAUG................................................. len:23 al:1
....................cGCAUCACUAAAAUUUCUCA.................................................... len:20 al:1
....................UGCAUCACUAAAAUUUCUCAAc.................................................. len:22 al:404
....................UGCAUCACUAAAAUUUCUCAAUc................................................. len:23 al:10
....................UGCAgCACUAAAAUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAuUUUCUCAAU.................................................. len:22 al:1
....................UGCAUCACUAAAAUUUCcC..................................................... len:19 al:1
....................UGCgUCACUAAAAUUUCUC..................................................... len:19 al:1
....................UGCAUCACUAAAAUUUCUCuAU.................................................. len:22 al:4
....................UGCAUCACUAAAAUUUCUCgAU.................................................. len:22 al:22
....................UGCAUCACUAAAAUUUCUCAAUa................................................. len:23 al:15
....................UGCAUCACUAAAAUUUCa...................................................... len:18 al:2
.....................GCAUCACUAAAAUUUCUC..................................................... len:18 al:1
.....................GCAUCACUAAAAUUUCUCAAU.................................................. len:21 al:5
......................CAUCACUAAAAUUUCUCAAU.................................................. len:20 al:5
.......................AUCACUAAAAUUUCUCAAU.................................................. len:19 al:3
.................................................UUGAGAAAUUGAAGUGAUGC....................... len:20 al:1
.................................................UUGAGAAAUUGAAGUGAUGCUAAu................... len:24 al:4
.................................................UUGAGAAAUUaAAGUGAUGCU...................... len:21 al:3
.................................................UUGAGAAAUUGAAGUGAUGCU...................... len:21 al:2
.................................................UUGAGAAAUUGAAGUGAUGCUAu.................... len:23 al:4
.................................................UUGAGAAAUUaAAGUGAUGC....................... len:20 al:1
..................................................UGAGAAAUUaAAGUGAUGC....................... len:19 al:84
..................................................UGAGAAAUUGAAGUGAUGCUAACA.................. len:24 al:1
..................................................UGAGAAAUUGAAGUGgUGCUAA.................... len:22 al:1
..................................................UGAGAAAUUaAAGUGAUGCU...................... len:20 al:430
..................................................UGAGAAAUUGAAGUGAUGCUAAu................... len:23 al:242
..................................................UGAGAAgUUGAAGUGAUGCU...................... len:20 al:6
..................................................UGAGAAAUUGAAGUGAUGCg...................... len:20 al:37
..................................................UuAGAAAUUGAAGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUGCUg..................... len:21 al:1
..................................................UGAGAAAUUGgAGUGAUGCU...................... len:20 al:10
..................................................UGAGAAAUUGAgGUGAUGCU...................... len:20 al:8
..................................................UGAGAAAUUGAAGUGAUc........................ len:18 al:2
..................................................UGAGAAAUcGAAGUGAUGCU...................... len:20 al:2
..................................................UaAGAAAUUGAAGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUaAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAA.................... len:22 al:85
..................................................UGAGAAAUUGAAGUGAUGCUu..................... len:21 al:1
..................................................UGAGAAAUUGAAGUGAUu........................ len:18 al:1
..................................................UGAGAAAUUGAAGUGAUGgU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUGCU...................... len:20 al:2090
..................................................UGAGAAgUUGAAGUGAUGCUA..................... len:21 al:2
..................................................UGAGAAAUUGAAGUGAUGaU...................... len:20 al:22
..................................................UGAGAAAUUGAAGUGAUGu....................... len:19 al:164
..................................................UGAGAAAUUGAAGUGAUGCUuA.................... len:22 al:1
..................................................UGAGAgAUUGAAGUGAUGCUAAC................... len:23 al:1
..................................................UGAGAAAUUGAAGUGAUGCc...................... len:20 al:287
..................................................UGAGAAAUUGAAGUGAcGCU...................... len:20 al:5
..................................................UGAGAAAUUGAAGUGAUGCUAAa................... len:23 al:1
..................................................UGAGAAAUUGAAGUGAUGCaAA.................... len:22 al:2
..................................................aGAGAAAUUGAAGUGAUGCUA..................... len:21 al:2
..................................................UGAGAgAUUGAAGUGAUGCU...................... len:20 al:18
..................................................UGAGAAAUUaAAGUGAUG........................ len:18 al:27
..................................................UGAGAAAUUGAAGUGAUGCUc..................... len:21 al:1
..................................................UGAGAAAUUGAAGUGAgG........................ len:18 al:1
..................................................UGAGAAAcUGAAGUGAUGCU...................... len:20 al:3
..................................................UGAGAAAUUGAAGUG........................... len:15 al:1
..................................................UGAGAAAUUGAAGUGuUGCU...................... len:20 al:2
..................................................UGAGAAAUUaAAGUGAUGCUA..................... len:21 al:28
..................................................UGAGAAAUUaAAGUGAUGCUAA.................... len:22 al:17
..................................................UGAGAAuUUGAAGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAuGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUa........................ len:18 al:11
..................................................UGAGAAAUUGAAGUGAcGC....................... len:19 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAu.................... len:22 al:370
..................................................UGAGAAAUUGAAGgGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUG........................ len:18 al:113
..................................................UGAGAAAUUGAAGUGgUGCU...................... len:20 al:15
..................................................UGAGAAAUUGAAGUGAUuCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAUGCUAAC................... len:23 al:8
..................................................UGAGgAAUUGAAGUGAUGCU...................... len:20 al:9
..................................................cGAGAAAUUGAAGUGAUGCU...................... len:20 al:11
..................................................UGAGAAAUUaAAGUGAUGCUAAC................... len:23 al:1
..................................................UGAGAAAcUGAAGUGAUGC....................... len:19 al:1
..................................................UGAGAAgUUGAAGUGAUGCUAA.................... len:22 al:1
..................................................UGAGAAAUUGAAaUGAUGCU...................... len:20 al:1
..................................................UGgGAAAUUGAAGUGAUGCU...................... len:20 al:9
..................................................UGAGAAAUUGAAGUGAUGCUAc.................... len:22 al:41
..................................................UGAGAAAUUGAAGUGAUGCUA..................... len:21 al:80
..................................................UGAGAAAUUGAAGUGAUGCUAg.................... len:22 al:4
..................................................cGAGAAAUUGAAGUGAUGCUAAC................... len:23 al:1
..................................................UGAGAAAUUGAAGUGAa......................... len:17 al:1
..................................................aGAGAAAUUGAAGUGAUGCU...................... len:20 al:2
..................................................UGAGAgAUUGAAGUGAUG........................ len:18 al:1
..................................................UGAGAAAUUGAAGUGAUGCgA..................... len:21 al:2
..................................................UGAGAAAUUGAAGcGAUGCU...................... len:20 al:6
..................................................UGAGAAAUUGgAGUGAUG........................ len:18 al:2
..................................................UGAGAAAUaGAAGUGAUGCU...................... len:20 al:2
..................................................UGAGAAAUUGAAGUGAUGC....................... len:19 al:324
..................................................UGAGAAAUUGAcGUGAUGCU...................... len:20 al:1
..................................................UGAGAAAUUGAAGUGAU......................... len:17 al:5
..................................................UGAGAAAUcGAAGUGAUGC....................... len:19 al:1
..................................................UGAGAAAUUGAAGUGAUaCU...................... len:20 al:3
..................................................UGgGAAAUUGAAGUGAUGCUAA.................... len:22 al:1
..................................................UGAGAAAUUGAAGUGAUGa....................... len:19 al:17
..................................................UGAGAAAUUGAAGUGAUaC....................... len:19 al:1
..................................................UGAGAAAUUGAAGUGAUGCa...................... len:20 al:97
..................................................UGAGAAAUUGgAGUGAUGCUA..................... len:21 al:3
...................................................GAGAAAUUaAAGUGAUGCUAA.................... len:21 al:1
...................................................GAGAAAUUGAAGUGAUGCUAu.................... len:21 al:1
...................................................GAGAAAUUGAAGUGAUGCUAAC................... len:22 al:1
...................................................GAGAAAUUGAAGUGAUGCU...................... len:19 al:3
...................................................GAGAAAUUGAAGUGAUGu....................... len:18 al:3
...................................................GAGAAAUUGgAGUGAUGC....................... len:18 al:1
...................................................GAGAAAUUaAAGUGAUGC....................... len:18 al:1
...................................................GAGAAAUUGAAGUGAUGC....................... len:18 al:1
....................................................AGAAAUUGAAGUGAUGCUAAC................... len:21 al:1
....................................................AGAAAUUGAAGUGAUGCUgAC................... len:21 al:1
....................................................AGAAAUUGAAGUGAUGCU...................... len:18 al:5
......................................................AAAUUGAAGUGAUGCUAu.................... len:18 al:4
........................................................................CAAUgACUGUCAAAAUAAU. len:19 al:5
........................................................................CAAUAACUGUCAAAAUAAUa len:20 al:2
........................................................................CAAUgACUGUCAAAAUAA.. len:18 al:8